Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:46001340-46961344

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plcxd2 16 45959263 to 46010218 50955 - protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 2
Tssr141274 16 46001807 to 46001818 11 - TSS region transcription start site region 141274
Tssr138637 16 46002034 to 46002042 8 + TSS region transcription start site region 138637
Tssr138638 16 46006511 to 46006553 42 + TSS region transcription start site region 138638
Tssr141275 16 46008899 to 46008903 4 - TSS region transcription start site region 141275
Tssr138639 16 46009094 to 46009105 11 + TSS region transcription start site region 138639
Cpgi8300 16 46010185 to 46010753 568 CpG island CpG island 8300
Tssr141276 16 46010212 to 46010223 11 - TSS region transcription start site region 141276
Tssr141277 16 46010229 to 46010251 22 - TSS region transcription start site region 141277
Tssr141278 16 46010262 to 46010284 22 - TSS region transcription start site region 141278
Tssr141279 16 46010355 to 46010437 82 - TSS region transcription start site region 141279
Tssr138640 16 46010553 to 46010580 27 + TSS region transcription start site region 138640
Tssr138641 16 46010773 to 46010776 3 + TSS region transcription start site region 138641
Gm24754 16 46018067 to 46018173 106 - snRNA gene predicted gene, 24754
4930546O09Rik 16 46021951 to 46027374 5423 unclassified non-coding RNA gene RIKEN cDNA 4930546O09 gene
Gm31198 16 46022196 to 46024423 2227 + lncRNA gene predicted gene, 31198
Cd96 16 46035657 to 46120251 84594 - protein coding gene CD96 antigen
Tssr141280 16 46038576 to 46038581 5 - TSS region transcription start site region 141280
Tssr141281 16 46038602 to 46038623 21 - TSS region transcription start site region 141281
Tssr141282 16 46039368 to 46039385 17 - TSS region transcription start site region 141282
Tssr138642 16 46039497 to 46039519 22 + TSS region transcription start site region 138642
Tssr141283 16 46049239 to 46049263 24 - TSS region transcription start site region 141283
Cpgi8301 16 46103968 to 46104159 191 CpG island CpG island 8301
Tssr138643 16 46113150 to 46113152 2 + TSS region transcription start site region 138643
Tssr141284 16 46120119 to 46120137 18 - TSS region transcription start site region 141284
Tssr141285 16 46120138 to 46120181 43 - TSS region transcription start site region 141285
Tssr141286 16 46120185 to 46120190 5 - TSS region transcription start site region 141286
Tssr141287 16 46120191 to 46120211 20 - TSS region transcription start site region 141287
Tssr141288 16 46120238 to 46120254 16 - TSS region transcription start site region 141288
Tssr4888 16 46120258 to 46120261 3 - TSS region transcription start site region 4888
Tssr141289 16 46120426 to 46120437 11 - TSS region transcription start site region 141289
Gm4737 16 46152985 to 46155077 2092 - protein coding gene predicted gene 4737
1700020B03Rik 16 46183151 to 46183603 452 unclassified gene RIKEN cDNA 1700020B03 gene
Tssr141290 16 46183588 to 46183621 33 - TSS region transcription start site region 141290
Gm26297 16 46219836 to 46219967 131 + snoRNA gene predicted gene, 26297
Nectin3 16 46387706 to 46498525 110819 - protein coding gene nectin cell adhesion molecule 3
Tssr141291 16 46433694 to 46433704 10 - TSS region transcription start site region 141291
Tssr141292 16 46481340 to 46481344 4 - TSS region transcription start site region 141292
Cpgi8302 16 46496025 to 46498212 2187 CpG island CpG island 8302
Tssr141293 16 46496285 to 46496311 26 - TSS region transcription start site region 141293
Tssr141294 16 46496324 to 46496338 14 - TSS region transcription start site region 141294
Tssr141295 16 46496869 to 46496883 14 - TSS region transcription start site region 141295
Tssr141296 16 46496943 to 46496954 11 - TSS region transcription start site region 141296
Tssr141297 16 46496955 to 46496986 31 - TSS region transcription start site region 141297
Tssr141298 16 46496987 to 46497010 23 - TSS region transcription start site region 141298
Tssr141299 16 46498530 to 46498542 12 - TSS region transcription start site region 141299
Tssr141300 16 46498557 to 46498571 14 - TSS region transcription start site region 141300
Tssr141301 16 46498582 to 46498588 6 - TSS region transcription start site region 141301
Gm17900 16 46538043 to 46539032 989 + pseudogene predicted gene, 17900
D16Mit44 16 46799787 to 46799919 132 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 44
Gm35687 16 46926061 to 46926547 486 - pseudogene predicted gene, 35687
Tssr138644 16 46958876 to 46958881 5 + TSS region transcription start site region 138644