Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:45575546-48925618

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241 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Slc9c1 16 45535309 to 45607001 71692 + protein coding gene solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
Tssr138631 16 45610417 to 45610438 21 + TSS region transcription start site region 138631
Gcsam 16 45610440 to 45622867 12427 + protein coding gene germinal center associated, signaling and motility
Tssr138632 16 45610441 to 45610450 9 + TSS region transcription start site region 138632
Tssr138633 16 45610456 to 45610467 11 + TSS region transcription start site region 138633
BC016579 16 45626848 to 45654068 27220 - protein coding gene cDNA sequence, BC016579
Gm49585 16 45642357 to 45642548 191 + pseudogene predicted gene, 49585
Cpgi8296 16 45653904 to 45654275 371 CpG island CpG island 8296
Tssr141241 16 45654050 to 45654061 11 - TSS region transcription start site region 141241
Tssr141242 16 45654083 to 45654096 13 - TSS region transcription start site region 141242
Tmprss7 16 45656315 to 45693658 37343 - protein coding gene transmembrane serine protease 7
D16Mit138.1 16 45690585 to 45690694 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138.1
D16Mit138 16 45690637 to 45690785 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138
Dice1b 16 45690637 to 72477597 26786960 QTL determination of interleukin 4 commitment 1b
Tssr141243 16 45693727 to 45693743 16 - TSS region transcription start site region 141243
Tssr141244 16 45708171 to 45708219 48 - TSS region transcription start site region 141244
Tagln3 16 45711230 to 45724531 13301 - protein coding gene transgelin 3
Tssr141245 16 45724344 to 45724454 110 - TSS region transcription start site region 141245
Cpgi8297 16 45724412 to 45724648 236 CpG island CpG island 8297
Tssr141246 16 45724471 to 45724478 7 - TSS region transcription start site region 141246
Tssr141247 16 45724500 to 45724513 13 - TSS region transcription start site region 141247
Tssr141248 16 45724526 to 45724545 19 - TSS region transcription start site region 141248
Tssr141249 16 45724549 to 45724560 11 - TSS region transcription start site region 141249
Tssr141250 16 45724600 to 45724619 19 - TSS region transcription start site region 141250
Tssr4887 16 45724620 to 45724627 7 - TSS region transcription start site region 4887
Tssr141251 16 45724695 to 45724698 3 - TSS region transcription start site region 141251
Tssr141252 16 45724705 to 45724710 5 - TSS region transcription start site region 141252
Tssr141253 16 45724771 to 45724782 11 - TSS region transcription start site region 141253
Abhd10 16 45729725 to 45742955 13230 - protein coding gene abhydrolase domain containing 10
Gm15591 16 45736503 to 45737318 815 + antisense lncRNA gene predicted gene 15591
Cpgi8298 16 45742542 to 45743236 694 CpG island CpG island 8298
Tssr141254 16 45742810 to 45742821 11 - TSS region transcription start site region 141254
Tssr141255 16 45742888 to 45742947 59 - TSS region transcription start site region 141255
Phldb2 16 45746243 to 45953598 207355 - protein coding gene pleckstrin homology like domain, family B, member 2
5430404G13Rik 16 45763670 to 45765820 2150 unclassified gene RIKEN cDNA 5430404G13 gene
Tssr141256 16 45784491 to 45784504 13 - TSS region transcription start site region 141256
Tssr138634 16 45786979 to 45786988 9 + TSS region transcription start site region 138634
D130060J10Rik 16 45792569 to 45796052 3483 unclassified gene RIKEN cDNA D130060J10 gene
Tssr141257 16 45795384 to 45795389 5 - TSS region transcription start site region 141257
Tssr141258 16 45799769 to 45799773 4 - TSS region transcription start site region 141258
Tssr141259 16 45801780 to 45801790 10 - TSS region transcription start site region 141259
Tssr141260 16 45843477 to 45843481 4 - TSS region transcription start site region 141260
Cpgi8299 16 45844073 to 45844790 717 CpG island CpG island 8299
Tssr141261 16 45844228 to 45844236 8 - TSS region transcription start site region 141261
Tssr141262 16 45844303 to 45844381 78 - TSS region transcription start site region 141262
Tssr141263 16 45844970 to 45844987 17 - TSS region transcription start site region 141263
Tssr141264 16 45844997 to 45845015 18 - TSS region transcription start site region 141264
Tssr141265 16 45880712 to 45880713 1 - TSS region transcription start site region 141265
Tssr141266 16 45887487 to 45887530 43 - TSS region transcription start site region 141266
Tssr141267 16 45910461 to 45910503 42 - TSS region transcription start site region 141267
Tssr141268 16 45926408 to 45926411 3 - TSS region transcription start site region 141268
Tssr138635 16 45936307 to 45936317 10 + TSS region transcription start site region 138635
Gm15640 16 45936323 to 45939279 2956 + antisense lncRNA gene predicted gene 15640
Tssr141269 16 45937477 to 45937488 11 - TSS region transcription start site region 141269
Gm15638 16 45945565 to 45957495 11930 + antisense lncRNA gene predicted gene 15638
Tssr138636 16 45945584 to 45945641 57 + TSS region transcription start site region 138636
Tssr141270 16 45953497 to 45953562 65 - TSS region transcription start site region 141270
Tssr141271 16 45953565 to 45953603 38 - TSS region transcription start site region 141271
Plcxd2 16 45959263 to 46010218 50955 - protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 2
Lmr12 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12
Lmr12a 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12a
Lmr12c 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12c
Lmr12b 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12b
D16Mit126 16 45972450 to 45972589 139 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 126
A130072N09Rik 16 45983919 to 45986492 2573 unclassified gene RIKEN cDNA A130072N09 gene
Tssr141272 16 45986445 to 45986474 29 - TSS region transcription start site region 141272
Tssr141273 16 45991358 to 45991359 1 - TSS region transcription start site region 141273
Tssr141274 16 46001807 to 46001818 11 - TSS region transcription start site region 141274
Tssr138637 16 46002034 to 46002042 8 + TSS region transcription start site region 138637
Tssr138638 16 46006511 to 46006553 42 + TSS region transcription start site region 138638
Tssr141275 16 46008899 to 46008903 4 - TSS region transcription start site region 141275
Tssr138639 16 46009094 to 46009105 11 + TSS region transcription start site region 138639
Cpgi8300 16 46010185 to 46010753 568 CpG island CpG island 8300
Tssr141276 16 46010212 to 46010223 11 - TSS region transcription start site region 141276
Tssr141277 16 46010229 to 46010251 22 - TSS region transcription start site region 141277
Tssr141278 16 46010262 to 46010284 22 - TSS region transcription start site region 141278
Tssr141279 16 46010355 to 46010437 82 - TSS region transcription start site region 141279
Tssr138640 16 46010553 to 46010580 27 + TSS region transcription start site region 138640
Tssr138641 16 46010773 to 46010776 3 + TSS region transcription start site region 138641
Gm24754 16 46018067 to 46018173 106 - snRNA gene predicted gene, 24754
4930546O09Rik 16 46021951 to 46027374 5423 unclassified non-coding RNA gene RIKEN cDNA 4930546O09 gene
Gm31198 16 46022196 to 46024423 2227 + lncRNA gene predicted gene, 31198
Cd96 16 46035657 to 46120251 84594 - protein coding gene CD96 antigen
Tssr141280 16 46038576 to 46038581 5 - TSS region transcription start site region 141280
Tssr141281 16 46038602 to 46038623 21 - TSS region transcription start site region 141281
Tssr141282 16 46039368 to 46039385 17 - TSS region transcription start site region 141282
Tssr138642 16 46039497 to 46039519 22 + TSS region transcription start site region 138642
Tssr141283 16 46049239 to 46049263 24 - TSS region transcription start site region 141283
Cpgi8301 16 46103968 to 46104159 191 CpG island CpG island 8301
Tssr138643 16 46113150 to 46113152 2 + TSS region transcription start site region 138643
Tssr141284 16 46120119 to 46120137 18 - TSS region transcription start site region 141284
Tssr141285 16 46120138 to 46120181 43 - TSS region transcription start site region 141285
Tssr141286 16 46120185 to 46120190 5 - TSS region transcription start site region 141286
Tssr141287 16 46120191 to 46120211 20 - TSS region transcription start site region 141287
Tssr141288 16 46120238 to 46120254 16 - TSS region transcription start site region 141288
Tssr4888 16 46120258 to 46120261 3 - TSS region transcription start site region 4888
Tssr141289 16 46120426 to 46120437 11 - TSS region transcription start site region 141289
Gm4737 16 46152985 to 46155077 2092 - protein coding gene predicted gene 4737
1700020B03Rik 16 46183151 to 46183603 452 unclassified gene RIKEN cDNA 1700020B03 gene
Tssr141290 16 46183588 to 46183621 33 - TSS region transcription start site region 141290
Gm26297 16 46219836 to 46219967 131 + snoRNA gene predicted gene, 26297
Nectin3 16 46387706 to 46498525 110819 - protein coding gene nectin cell adhesion molecule 3
Tssr141291 16 46433694 to 46433704 10 - TSS region transcription start site region 141291
Tssr141292 16 46481340 to 46481344 4 - TSS region transcription start site region 141292
Cpgi8302 16 46496025 to 46498212 2187 CpG island CpG island 8302
Tssr141293 16 46496285 to 46496311 26 - TSS region transcription start site region 141293
Tssr141294 16 46496324 to 46496338 14 - TSS region transcription start site region 141294
Tssr141295 16 46496869 to 46496883 14 - TSS region transcription start site region 141295
Tssr141296 16 46496943 to 46496954 11 - TSS region transcription start site region 141296
Tssr141297 16 46496955 to 46496986 31 - TSS region transcription start site region 141297
Tssr141298 16 46496987 to 46497010 23 - TSS region transcription start site region 141298
Tssr141299 16 46498530 to 46498542 12 - TSS region transcription start site region 141299
Tssr141300 16 46498557 to 46498571 14 - TSS region transcription start site region 141300
Tssr141301 16 46498582 to 46498588 6 - TSS region transcription start site region 141301
Gm17900 16 46538043 to 46539032 989 + pseudogene predicted gene, 17900
D16Mit44 16 46799787 to 46799919 132 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 44
Gm35687 16 46926061 to 46926547 486 - pseudogene predicted gene, 35687
Tssr138644 16 46958876 to 46958881 5 + TSS region transcription start site region 138644
Tssr141302 16 46990348 to 46990355 7 - TSS region transcription start site region 141302
Gm6912 16 47074203 to 47076034 1831 + pseudogene predicted gene 6912
Tssr138645 16 47212336 to 47212359 23 + TSS region transcription start site region 138645
Gm18169 16 47212370 to 47212895 525 + pseudogene predicted gene, 18169
n-TKctt2 16 47250546 to 47250618 72 + tRNA gene nuclear encoded tRNA lysine 2 (anticodon CTT)
Gm24651 16 47506319 to 47506425 106 - snRNA gene predicted gene, 24651
Gm25318 16 47595773 to 47596086 313 - unclassified non-coding RNA gene predicted gene, 25318
Gm6914 16 47620504 to 47621691 1187 + pseudogene predicted gene 6914
D16Ium44 16 47651103 to 47651236 133 DNA segment DNA segment, Chr 16, Indiana University Medical 44
D16Ium43 16 47651137 to 47651286 149 DNA segment DNA segment, Chr 16, Indiana University Medical 43
D16Ium73 16 47653609 to 47653749 140 DNA segment DNA segment, Chr 16, Indiana University Medical 73
Gm25339 16 47758440 to 47758671 231 + unclassified non-coding RNA gene predicted gene, 25339
D16Mit45 16 47869322 to 47869434 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 45
D16Mit214 16 47877473 to 47877624 151 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 214
Gm7275 16 48072997 to 48074182 1185 + pseudogene predicted gene 7275
Gm17804 16 48104461 to 48105619 1158 + pseudogene predicted gene, 17804
6430553K19Rik 16 48131142 to 48158499 27357 - lincRNA gene RIKEN cDNA 6430553K19 gene
Tssr138646 16 48218529 to 48218531 2 + TSS region transcription start site region 138646
Tssr164732 16 48218568 to 48218573 5 + TSS region transcription start site region 164732
Gm7204 16 48218605 to 48219201 596 + pseudogene predicted pseudogene 7204
Tssr138647 16 48219072 to 48219110 38 + TSS region transcription start site region 138647
Gm49770 16 48261814 to 48262774 960 + pseudogene predicted gene, 49770
Tssr138648 16 48281653 to 48281665 12 + TSS region transcription start site region 138648
Dppa4 16 48283733 to 48294237 10504 + protein coding gene developmental pluripotency associated 4
Tssr138649 16 48289028 to 48289032 4 + TSS region transcription start site region 138649
Tssr138650 16 48303863 to 48303896 33 + TSS region transcription start site region 138650
Tssr138651 16 48303914 to 48303925 11 + TSS region transcription start site region 138651
Tssr138652 16 48310165 to 48310188 23 + TSS region transcription start site region 138652
Dppa2 16 48310274 to 48319513 9239 + protein coding gene developmental pluripotency associated 2
Tssr138653 16 48310427 to 48310466 39 + TSS region transcription start site region 138653
D16Mit61 16 48330176 to 48330322 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 61
Gm49771 16 48368642 to 48368752 110 + pseudogene predicted gene, 49771
Gm5485 16 48399453 to 48412416 12963 - lncRNA gene predicted gene 5485
Tssr141303 16 48410120 to 48410150 30 - TSS region transcription start site region 141303
n-R5s36 16 48410306 to 48410424 118 - rRNA gene nuclear encoded rRNA 5S 36
Tssr141304 16 48412408 to 48412421 13 - TSS region transcription start site region 141304
Cpgi8303 16 48431118 to 48431390 272 CpG island CpG island 8303
Morc1 16 48431237 to 48630900 199663 + protein coding gene microrchidia 1
Tssr138654 16 48431281 to 48431323 42 + TSS region transcription start site region 138654
Tssr138655 16 48431330 to 48431339 9 + TSS region transcription start site region 138655
Tssr138656 16 48479560 to 48479577 17 + TSS region transcription start site region 138656
Tssr141305 16 48589346 to 48589348 2 - TSS region transcription start site region 141305
Tssr138657 16 48594605 to 48594620 15 + TSS region transcription start site region 138657
Tssr138658 16 48594627 to 48594680 53 + TSS region transcription start site region 138658
Tssr138659 16 48598883 to 48598886 3 + TSS region transcription start site region 138659
Gm41458 16 48600118 to 48614343 14225 - lncRNA gene predicted gene, 41458
Tssr138660 16 48611656 to 48611671 15 + TSS region transcription start site region 138660
Tssr138661 16 48611685 to 48611720 35 + TSS region transcription start site region 138661
Tssr138662 16 48611725 to 48611741 16 + TSS region transcription start site region 138662
Tssr138663 16 48611782 to 48611785 3 + TSS region transcription start site region 138663
Tssr138664 16 48611788 to 48611808 20 + TSS region transcription start site region 138664
Tssr138665 16 48611809 to 48611820 11 + TSS region transcription start site region 138665
Tssr138666 16 48611844 to 48611853 9 + TSS region transcription start site region 138666
Tssr138667 16 48612160 to 48612206 46 + TSS region transcription start site region 138667
Tssr141306 16 48613838 to 48613865 27 - TSS region transcription start site region 141306
Tssr138668 16 48629918 to 48629922 4 + TSS region transcription start site region 138668
Tssr138669 16 48629988 to 48630011 23 + TSS region transcription start site region 138669
Tssr138670 16 48630154 to 48630166 12 + TSS region transcription start site region 138670
D16Mit62 16 48684711 to 48684860 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 62
D16Mit170 16 48684719 to 48684843 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 170
Trat1 16 48730774 to 48772021 41247 - protein coding gene T cell receptor associated transmembrane adaptor 1
Gm8670 16 48749400 to 48750448 1048 - pseudogene predicted gene 8670
Cpgi8304 16 48750186 to 48750506 320 CpG island CpG island 8304
Tssr4889 16 48771967 to 48771976 9 - TSS region transcription start site region 4889
Tssr141307 16 48772009 to 48772030 21 - TSS region transcription start site region 141307
Tssr141308 16 48772036 to 48772051 15 - TSS region transcription start site region 141308
Tssr141309 16 48772052 to 48772069 17 - TSS region transcription start site region 141309
Tssr141310 16 48772102 to 48772143 41 - TSS region transcription start site region 141310
Tssr141311 16 48772145 to 48772157 12 - TSS region transcription start site region 141311
Tssr141312 16 48786405 to 48786414 9 - TSS region transcription start site region 141312
Tssr138671 16 48786559 to 48786577 18 + TSS region transcription start site region 138671
Tssr138672 16 48786602 to 48786613 11 + TSS region transcription start site region 138672
Tssr138673 16 48786649 to 48786678 29 + TSS region transcription start site region 138673
Tssr138674 16 48790203 to 48790212 9 + TSS region transcription start site region 138674
Tssr138675 16 48790238 to 48790255 17 + TSS region transcription start site region 138675
Tssr138676 16 48790269 to 48790281 12 + TSS region transcription start site region 138676
Tssr138677 16 48790301 to 48790307 6 + TSS region transcription start site region 138677
Retnlb 16 48816856 to 48818892 2036 + protein coding gene resistin like beta
Tssr138678 16 48816961 to 48816976 15 + TSS region transcription start site region 138678
Tssr4890 16 48818659 to 48818666 7 - TSS region transcription start site region 4890
Tssr141313 16 48818718 to 48818733 15 - TSS region transcription start site region 141313