Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:4545413-4725453

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tfap4 16 4544661 to 4559854 15193 - protein coding gene transcription factor AP4
Tssr139775 16 4549406 to 4549436 30 - TSS region transcription start site region 139775
Cpgi7912 16 4558049 to 4561009 2960 CpG island CpG island 7912
Tssr136855 16 4558107 to 4558142 35 + TSS region transcription start site region 136855
Tssr139776 16 4558607 to 4558649 42 - TSS region transcription start site region 139776
Tssr136856 16 4558697 to 4558741 44 + TSS region transcription start site region 136856
Tssr136857 16 4558749 to 4558763 14 + TSS region transcription start site region 136857
Tssr139777 16 4559608 to 4559681 73 - TSS region transcription start site region 139777
Tssr139778 16 4559721 to 4559747 26 - TSS region transcription start site region 139778
Tssr139779 16 4559777 to 4559825 48 - TSS region transcription start site region 139779
Tssr139780 16 4560087 to 4560101 14 - TSS region transcription start site region 139780
Cpgi7913 16 4586498 to 4587098 600 CpG island CpG island 7913
D330022H12Rik 16 4592252 to 4594481 2229 - lncRNA gene RIKEN cDNA D330022H12 gene
Cpgi7914 16 4593804 to 4595667 1863 CpG island CpG island 7914
Tssr136858 16 4594683 to 4594735 52 + TSS region transcription start site region 136858
Glis2 16 4594713 to 4624924 30211 + protein coding gene GLIS family zinc finger 2
Tssr136859 16 4594740 to 4594759 19 + TSS region transcription start site region 136859
Tssr136860 16 4594853 to 4594884 31 + TSS region transcription start site region 136860
Pam16 16 4616464 to 4624988 8524 - protein coding gene presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
Cpgi7915 16 4624297 to 4625115 818 CpG island CpG island 7915
Tssr139781 16 4624938 to 4624972 34 - TSS region transcription start site region 139781
Tssr139782 16 4624984 to 4624991 7 - TSS region transcription start site region 139782
Coro7 16 4626884 to 4679720 52836 - protein coding gene coronin 7
D16Mit180 16 4631112 to 4631218 106 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 180
Tssr139783 16 4634376 to 4634426 50 - TSS region transcription start site region 139783
Tssr139784 16 4635413 to 4635453 40 - TSS region transcription start site region 139784
Tssr136861 16 4639937 to 4639944 7 + TSS region transcription start site region 136861
Vasn 16 4639941 to 4650802 10861 + protein coding gene vasorin
Tssr136862 16 4639956 to 4639978 22 + TSS region transcription start site region 136862
Cpgi7916 16 4640032 to 4640442 410 CpG island CpG island 7916
Tssr136863 16 4649166 to 4649180 14 + TSS region transcription start site region 136863
Tssr139785 16 4670531 to 4670581 50 - TSS region transcription start site region 139785
Cpgi7917 16 4679146 to 4679957 811 CpG island CpG island 7917
Tssr139786 16 4679660 to 4679699 39 - TSS region transcription start site region 139786
Tssr139787 16 4679703 to 4679747 44 - TSS region transcription start site region 139787
Tssr136864 16 4679826 to 4679834 8 + TSS region transcription start site region 136864
Cpgi7918 16 4683689 to 4684603 914 CpG island CpG island 7918
Dnaja3 16 4684070 to 4707695 23625 + protein coding gene DnaJ heat shock protein family (Hsp40) member A3
Tssr136865 16 4684099 to 4684137 38 + TSS region transcription start site region 136865
Tssr136866 16 4684229 to 4684236 7 + TSS region transcription start site region 136866
Tssr136867 16 4701182 to 4701195 13 + TSS region transcription start site region 136867
Tssr136868 16 4707125 to 4707130 5 + TSS region transcription start site region 136868
Nmral1 16 4711317 to 4719356 8039 - protein coding gene NmrA-like family domain containing 1
Tssr139788 16 4719043 to 4719054 11 - TSS region transcription start site region 139788
Tssr139789 16 4719078 to 4719126 48 - TSS region transcription start site region 139789
Tssr139790 16 4719128 to 4719146 18 - TSS region transcription start site region 139790
Tssr139791 16 4719148 to 4719164 16 - TSS region transcription start site region 139791