Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:45415637-45965785

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Gm609 16 45412005 to 45493004 80999 - protein coding gene predicted gene 609
Gm16011 16 45426845 to 45429506 2661 - pseudogene predicted gene 16011
Tssr138626 16 45434853 to 45434854 1 + TSS region transcription start site region 138626
Tssr141236 16 45454914 to 45454926 12 - TSS region transcription start site region 141236
Tssr141237 16 45454932 to 45454974 42 - TSS region transcription start site region 141237
Tssr141238 16 45492931 to 45492948 17 - TSS region transcription start site region 141238
Tssr141239 16 45492962 to 45492993 31 - TSS region transcription start site region 141239
Gm17783 16 45511791 to 45532050 20259 - protein coding gene predicted gene, 17783
Tssr141240 16 45531982 to 45532042 60 - TSS region transcription start site region 141240
Gm6903 16 45533124 to 45534489 1365 - pseudogene predicted gene 6903
Tssr138627 16 45535292 to 45535301 9 + TSS region transcription start site region 138627
Tssr138628 16 45535303 to 45535317 14 + TSS region transcription start site region 138628
Slc9c1 16 45535309 to 45607001 71692 + protein coding gene solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
Tssr138629 16 45535325 to 45535336 11 + TSS region transcription start site region 138629
Tssr138630 16 45535340 to 45535354 14 + TSS region transcription start site region 138630
Tssr138631 16 45610417 to 45610438 21 + TSS region transcription start site region 138631
Gcsam 16 45610440 to 45622867 12427 + protein coding gene germinal center associated, signaling and motility
Tssr138632 16 45610441 to 45610450 9 + TSS region transcription start site region 138632
Tssr138633 16 45610456 to 45610467 11 + TSS region transcription start site region 138633
BC016579 16 45626848 to 45654068 27220 - protein coding gene cDNA sequence, BC016579
Gm49585 16 45642357 to 45642548 191 + pseudogene predicted gene, 49585
Cpgi8296 16 45653904 to 45654275 371 CpG island CpG island 8296
Tssr141241 16 45654050 to 45654061 11 - TSS region transcription start site region 141241
Tssr141242 16 45654083 to 45654096 13 - TSS region transcription start site region 141242
Tmprss7 16 45656315 to 45693658 37343 - protein coding gene transmembrane serine protease 7
D16Mit138.1 16 45690585 to 45690694 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138.1
Dice1b 16 45690637 to 72477597 26786960 QTL determination of interleukin 4 commitment 1b
D16Mit138 16 45690637 to 45690785 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138
Tssr141243 16 45693727 to 45693743 16 - TSS region transcription start site region 141243
Tssr141244 16 45708171 to 45708219 48 - TSS region transcription start site region 141244
Tagln3 16 45711230 to 45724531 13301 - protein coding gene transgelin 3
Tssr141245 16 45724344 to 45724454 110 - TSS region transcription start site region 141245
Cpgi8297 16 45724412 to 45724648 236 CpG island CpG island 8297
Tssr141246 16 45724471 to 45724478 7 - TSS region transcription start site region 141246
Tssr141247 16 45724500 to 45724513 13 - TSS region transcription start site region 141247
Tssr141248 16 45724526 to 45724545 19 - TSS region transcription start site region 141248
Tssr141249 16 45724549 to 45724560 11 - TSS region transcription start site region 141249
Tssr141250 16 45724600 to 45724619 19 - TSS region transcription start site region 141250
Tssr4887 16 45724620 to 45724627 7 - TSS region transcription start site region 4887
Tssr141251 16 45724695 to 45724698 3 - TSS region transcription start site region 141251
Tssr141252 16 45724705 to 45724710 5 - TSS region transcription start site region 141252
Tssr141253 16 45724771 to 45724782 11 - TSS region transcription start site region 141253
Abhd10 16 45729725 to 45742955 13230 - protein coding gene abhydrolase domain containing 10
Gm15591 16 45736503 to 45737318 815 + antisense lncRNA gene predicted gene 15591
Cpgi8298 16 45742542 to 45743236 694 CpG island CpG island 8298
Tssr141254 16 45742810 to 45742821 11 - TSS region transcription start site region 141254
Tssr141255 16 45742888 to 45742947 59 - TSS region transcription start site region 141255
Phldb2 16 45746243 to 45953598 207355 - protein coding gene pleckstrin homology like domain, family B, member 2
5430404G13Rik 16 45763670 to 45765820 2150 unclassified gene RIKEN cDNA 5430404G13 gene
Tssr141256 16 45784491 to 45784504 13 - TSS region transcription start site region 141256
Tssr138634 16 45786979 to 45786988 9 + TSS region transcription start site region 138634
D130060J10Rik 16 45792569 to 45796052 3483 unclassified gene RIKEN cDNA D130060J10 gene
Tssr141257 16 45795384 to 45795389 5 - TSS region transcription start site region 141257
Tssr141258 16 45799769 to 45799773 4 - TSS region transcription start site region 141258
Tssr141259 16 45801780 to 45801790 10 - TSS region transcription start site region 141259
Tssr141260 16 45843477 to 45843481 4 - TSS region transcription start site region 141260
Cpgi8299 16 45844073 to 45844790 717 CpG island CpG island 8299
Tssr141261 16 45844228 to 45844236 8 - TSS region transcription start site region 141261
Tssr141262 16 45844303 to 45844381 78 - TSS region transcription start site region 141262
Tssr141263 16 45844970 to 45844987 17 - TSS region transcription start site region 141263
Tssr141264 16 45844997 to 45845015 18 - TSS region transcription start site region 141264
Tssr141265 16 45880712 to 45880713 1 - TSS region transcription start site region 141265
Tssr141266 16 45887487 to 45887530 43 - TSS region transcription start site region 141266
Tssr141267 16 45910461 to 45910503 42 - TSS region transcription start site region 141267
Tssr141268 16 45926408 to 45926411 3 - TSS region transcription start site region 141268
Tssr138635 16 45936307 to 45936317 10 + TSS region transcription start site region 138635
Gm15640 16 45936323 to 45939279 2956 + antisense lncRNA gene predicted gene 15640
Tssr141269 16 45937477 to 45937488 11 - TSS region transcription start site region 141269
Gm15638 16 45945565 to 45957495 11930 + antisense lncRNA gene predicted gene 15638
Tssr138636 16 45945584 to 45945641 57 + TSS region transcription start site region 138636
Tssr141270 16 45953497 to 45953562 65 - TSS region transcription start site region 141270
Tssr141271 16 45953565 to 45953603 38 - TSS region transcription start site region 141271
Plcxd2 16 45959263 to 46010218 50955 - protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 2