Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:45188124-45879489

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Atg3 16 45158785 to 45188538 29753 + protein coding gene autophagy related 3
Tssr138610 16 45201727 to 45201729 2 + TSS region transcription start site region 138610
Gm6030 16 45205100 to 45205489 389 + pseudogene predicted gene 6030
Btla 16 45223545 to 45252895 29350 + protein coding gene B and T lymphocyte associated
Tssr141215 16 45223725 to 45223735 10 - TSS region transcription start site region 141215
Tssr138611 16 45223939 to 45223951 12 + TSS region transcription start site region 138611
Tssr138612 16 45224074 to 45224085 11 + TSS region transcription start site region 138612
Tssr138613 16 45224112 to 45224123 11 + TSS region transcription start site region 138613
Tssr138614 16 45224128 to 45224139 11 + TSS region transcription start site region 138614
Tssr138615 16 45224144 to 45224169 25 + TSS region transcription start site region 138615
Tssr138616 16 45224171 to 45224192 21 + TSS region transcription start site region 138616
Tssr138617 16 45224325 to 45224346 21 + TSS region transcription start site region 138617
Tssr138618 16 45224357 to 45224364 7 + TSS region transcription start site region 138618
Tssr141216 16 45224529 to 45224534 5 - TSS region transcription start site region 141216
Tssr138619 16 45224582 to 45224593 11 + TSS region transcription start site region 138619
Tssr141217 16 45224819 to 45224831 12 - TSS region transcription start site region 141217
Tssr138620 16 45224945 to 45224958 13 + TSS region transcription start site region 138620
Tssr138621 16 45224977 to 45224988 11 + TSS region transcription start site region 138621
Tssr138622 16 45227267 to 45227309 42 + TSS region transcription start site region 138622
Tssr138623 16 45244976 to 45244979 3 + TSS region transcription start site region 138623
Tssr141218 16 45275734 to 45275743 9 - TSS region transcription start site region 141218
Gm30636 16 45338037 to 45362407 24370 - lncRNA gene predicted gene, 30636
9530002O20Rik 16 45357034 to 45358362 1328 unclassified gene RIKEN cDNA 9530002O20 gene
Gm30760 16 45362425 to 45366379 3954 - lncRNA gene predicted gene, 30760
Tssr141219 16 45372627 to 45372638 11 - TSS region transcription start site region 141219
Tssr138624 16 45372817 to 45372826 9 + TSS region transcription start site region 138624
Cd200 16 45382135 to 45409053 26918 - protein coding gene CD200 antigen
Tssr141220 16 45382599 to 45382609 10 - TSS region transcription start site region 141220
Tssr141221 16 45382622 to 45382633 11 - TSS region transcription start site region 141221
Tssr4884 16 45382690 to 45382693 3 - TSS region transcription start site region 4884
Tssr4885 16 45382727 to 45382738 11 - TSS region transcription start site region 4885
Tssr141222 16 45382743 to 45382753 10 - TSS region transcription start site region 141222
Tssr141223 16 45382756 to 45382767 11 - TSS region transcription start site region 141223
Tssr141224 16 45382775 to 45382790 15 - TSS region transcription start site region 141224
Tssr141225 16 45382799 to 45382846 47 - TSS region transcription start site region 141225
Tssr141226 16 45382851 to 45382882 31 - TSS region transcription start site region 141226
Tssr141227 16 45382905 to 45382917 12 - TSS region transcription start site region 141227
Tssr141228 16 45382947 to 45382958 11 - TSS region transcription start site region 141228
Tssr141229 16 45382963 to 45382974 11 - TSS region transcription start site region 141229
Tssr4886 16 45383059 to 45383068 9 - TSS region transcription start site region 4886
Tssr141230 16 45383116 to 45383126 10 - TSS region transcription start site region 141230
Tssr141231 16 45383210 to 45383227 17 - TSS region transcription start site region 141231
Tssr141232 16 45383262 to 45383269 7 - TSS region transcription start site region 141232
Tssr141233 16 45397129 to 45397145 16 - TSS region transcription start site region 141233
D16Mit84 16 45397698 to 45397836 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 84
Cpgi8295 16 45408544 to 45408963 419 CpG island CpG island 8295
Tssr141234 16 45408932 to 45408950 18 - TSS region transcription start site region 141234
Tssr141235 16 45408955 to 45409048 93 - TSS region transcription start site region 141235
Tssr138625 16 45411520 to 45411526 6 + TSS region transcription start site region 138625
Gm5406 16 45411580 to 45412345 765 + pseudogene predicted gene 5406
Gm609 16 45412005 to 45493004 80999 - protein coding gene predicted gene 609
Gm16011 16 45426845 to 45429506 2661 - pseudogene predicted gene 16011
Tssr138626 16 45434853 to 45434854 1 + TSS region transcription start site region 138626
Tssr141236 16 45454914 to 45454926 12 - TSS region transcription start site region 141236
Tssr141237 16 45454932 to 45454974 42 - TSS region transcription start site region 141237
Tssr141238 16 45492931 to 45492948 17 - TSS region transcription start site region 141238
Tssr141239 16 45492962 to 45492993 31 - TSS region transcription start site region 141239
Gm17783 16 45511791 to 45532050 20259 - protein coding gene predicted gene, 17783
Tssr141240 16 45531982 to 45532042 60 - TSS region transcription start site region 141240
Gm6903 16 45533124 to 45534489 1365 - pseudogene predicted gene 6903
Tssr138627 16 45535292 to 45535301 9 + TSS region transcription start site region 138627
Tssr138628 16 45535303 to 45535317 14 + TSS region transcription start site region 138628
Slc9c1 16 45535309 to 45607001 71692 + protein coding gene solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
Tssr138629 16 45535325 to 45535336 11 + TSS region transcription start site region 138629
Tssr138630 16 45535340 to 45535354 14 + TSS region transcription start site region 138630
Tssr138631 16 45610417 to 45610438 21 + TSS region transcription start site region 138631
Gcsam 16 45610440 to 45622867 12427 + protein coding gene germinal center associated, signaling and motility
Tssr138632 16 45610441 to 45610450 9 + TSS region transcription start site region 138632
Tssr138633 16 45610456 to 45610467 11 + TSS region transcription start site region 138633
BC016579 16 45626848 to 45654068 27220 - protein coding gene cDNA sequence, BC016579
Gm49585 16 45642357 to 45642548 191 + pseudogene predicted gene, 49585
Cpgi8296 16 45653904 to 45654275 371 CpG island CpG island 8296
Tssr141241 16 45654050 to 45654061 11 - TSS region transcription start site region 141241
Tssr141242 16 45654083 to 45654096 13 - TSS region transcription start site region 141242
Tmprss7 16 45656315 to 45693658 37343 - protein coding gene transmembrane serine protease 7
D16Mit138.1 16 45690585 to 45690694 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138.1
Dice1b 16 45690637 to 72477597 26786960 QTL determination of interleukin 4 commitment 1b
D16Mit138 16 45690637 to 45690785 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138
Tssr141243 16 45693727 to 45693743 16 - TSS region transcription start site region 141243
Tssr141244 16 45708171 to 45708219 48 - TSS region transcription start site region 141244
Tagln3 16 45711230 to 45724531 13301 - protein coding gene transgelin 3
Tssr141245 16 45724344 to 45724454 110 - TSS region transcription start site region 141245
Cpgi8297 16 45724412 to 45724648 236 CpG island CpG island 8297
Tssr141246 16 45724471 to 45724478 7 - TSS region transcription start site region 141246
Tssr141247 16 45724500 to 45724513 13 - TSS region transcription start site region 141247
Tssr141248 16 45724526 to 45724545 19 - TSS region transcription start site region 141248
Tssr141249 16 45724549 to 45724560 11 - TSS region transcription start site region 141249
Tssr141250 16 45724600 to 45724619 19 - TSS region transcription start site region 141250
Tssr4887 16 45724620 to 45724627 7 - TSS region transcription start site region 4887
Tssr141251 16 45724695 to 45724698 3 - TSS region transcription start site region 141251
Tssr141252 16 45724705 to 45724710 5 - TSS region transcription start site region 141252
Tssr141253 16 45724771 to 45724782 11 - TSS region transcription start site region 141253
Abhd10 16 45729725 to 45742955 13230 - protein coding gene abhydrolase domain containing 10
Gm15591 16 45736503 to 45737318 815 + antisense lncRNA gene predicted gene 15591
Cpgi8298 16 45742542 to 45743236 694 CpG island CpG island 8298
Tssr141254 16 45742810 to 45742821 11 - TSS region transcription start site region 141254
Tssr141255 16 45742888 to 45742947 59 - TSS region transcription start site region 141255
Phldb2 16 45746243 to 45953598 207355 - protein coding gene pleckstrin homology like domain, family B, member 2
5430404G13Rik 16 45763670 to 45765820 2150 unclassified gene RIKEN cDNA 5430404G13 gene
Tssr141256 16 45784491 to 45784504 13 - TSS region transcription start site region 141256
Tssr138634 16 45786979 to 45786988 9 + TSS region transcription start site region 138634
D130060J10Rik 16 45792569 to 45796052 3483 unclassified gene RIKEN cDNA D130060J10 gene
Tssr141257 16 45795384 to 45795389 5 - TSS region transcription start site region 141257
Tssr141258 16 45799769 to 45799773 4 - TSS region transcription start site region 141258
Tssr141259 16 45801780 to 45801790 10 - TSS region transcription start site region 141259
Tssr141260 16 45843477 to 45843481 4 - TSS region transcription start site region 141260
Cpgi8299 16 45844073 to 45844790 717 CpG island CpG island 8299
Tssr141261 16 45844228 to 45844236 8 - TSS region transcription start site region 141261
Tssr141262 16 45844303 to 45844381 78 - TSS region transcription start site region 141262
Tssr141263 16 45844970 to 45844987 17 - TSS region transcription start site region 141263
Tssr141264 16 45844997 to 45845015 18 - TSS region transcription start site region 141264