Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:45112034-45603362

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc80 16 45093407 to 45127924 34517 + protein coding gene coiled-coil domain containing 80
D530031A16Rik 16 45119462 to 45120560 1098 unclassified gene RIKEN cDNA D530031A16 gene
Slc35a5 16 45139573 to 45158676 19103 - protein coding gene solute carrier family 35, member A5
Tssr141208 16 45148568 to 45148613 45 - TSS region transcription start site region 141208
Cpgi8294 16 45158082 to 45159436 1354 CpG island CpG island 8294
Tssr141209 16 45158273 to 45158286 13 - TSS region transcription start site region 141209
Tssr138596 16 45158378 to 45158390 12 + TSS region transcription start site region 138596
Tssr141210 16 45158515 to 45158520 5 - TSS region transcription start site region 141210
Tssr141211 16 45158592 to 45158612 20 - TSS region transcription start site region 141211
Tssr141212 16 45158624 to 45158645 21 - TSS region transcription start site region 141212
Tssr141213 16 45158650 to 45158683 33 - TSS region transcription start site region 141213
Tssr138597 16 45158725 to 45158810 85 + TSS region transcription start site region 138597
Atg3 16 45158785 to 45188538 29753 + protein coding gene autophagy related 3
Tssr138598 16 45158820 to 45158839 19 + TSS region transcription start site region 138598
Tssr138599 16 45158847 to 45158862 15 + TSS region transcription start site region 138599
Tssr138600 16 45158869 to 45158921 52 + TSS region transcription start site region 138600
Tssr138601 16 45158954 to 45159001 47 + TSS region transcription start site region 138601
Tssr138602 16 45159006 to 45159017 11 + TSS region transcription start site region 138602
Tssr138603 16 45159056 to 45159079 23 + TSS region transcription start site region 138603
Tssr138604 16 45159087 to 45159110 23 + TSS region transcription start site region 138604
Tssr138605 16 45162559 to 45162565 6 + TSS region transcription start site region 138605
Tssr138606 16 45163242 to 45163288 46 + TSS region transcription start site region 138606
Tssr138607 16 45169859 to 45169903 44 + TSS region transcription start site region 138607
Tssr138608 16 45171719 to 45171736 17 + TSS region transcription start site region 138608
Tssr141214 16 45173919 to 45173937 18 - TSS region transcription start site region 141214
Tssr138609 16 45184764 to 45184790 26 + TSS region transcription start site region 138609
Tssr138610 16 45201727 to 45201729 2 + TSS region transcription start site region 138610
Gm6030 16 45205100 to 45205489 389 + pseudogene predicted gene 6030
Btla 16 45223545 to 45252895 29350 + protein coding gene B and T lymphocyte associated
Tssr141215 16 45223725 to 45223735 10 - TSS region transcription start site region 141215
Tssr138611 16 45223939 to 45223951 12 + TSS region transcription start site region 138611
Tssr138612 16 45224074 to 45224085 11 + TSS region transcription start site region 138612
Tssr138613 16 45224112 to 45224123 11 + TSS region transcription start site region 138613
Tssr138614 16 45224128 to 45224139 11 + TSS region transcription start site region 138614
Tssr138615 16 45224144 to 45224169 25 + TSS region transcription start site region 138615
Tssr138616 16 45224171 to 45224192 21 + TSS region transcription start site region 138616
Tssr138617 16 45224325 to 45224346 21 + TSS region transcription start site region 138617
Tssr138618 16 45224357 to 45224364 7 + TSS region transcription start site region 138618
Tssr141216 16 45224529 to 45224534 5 - TSS region transcription start site region 141216
Tssr138619 16 45224582 to 45224593 11 + TSS region transcription start site region 138619
Tssr141217 16 45224819 to 45224831 12 - TSS region transcription start site region 141217
Tssr138620 16 45224945 to 45224958 13 + TSS region transcription start site region 138620
Tssr138621 16 45224977 to 45224988 11 + TSS region transcription start site region 138621
Tssr138622 16 45227267 to 45227309 42 + TSS region transcription start site region 138622
Tssr138623 16 45244976 to 45244979 3 + TSS region transcription start site region 138623
Tssr141218 16 45275734 to 45275743 9 - TSS region transcription start site region 141218
Gm30636 16 45338037 to 45362407 24370 - lncRNA gene predicted gene, 30636
9530002O20Rik 16 45357034 to 45358362 1328 unclassified gene RIKEN cDNA 9530002O20 gene
Gm30760 16 45362425 to 45366379 3954 - lncRNA gene predicted gene, 30760
Tssr141219 16 45372627 to 45372638 11 - TSS region transcription start site region 141219
Tssr138624 16 45372817 to 45372826 9 + TSS region transcription start site region 138624
Cd200 16 45382135 to 45409053 26918 - protein coding gene CD200 antigen
Tssr141220 16 45382599 to 45382609 10 - TSS region transcription start site region 141220
Tssr141221 16 45382622 to 45382633 11 - TSS region transcription start site region 141221
Tssr4884 16 45382690 to 45382693 3 - TSS region transcription start site region 4884
Tssr4885 16 45382727 to 45382738 11 - TSS region transcription start site region 4885
Tssr141222 16 45382743 to 45382753 10 - TSS region transcription start site region 141222
Tssr141223 16 45382756 to 45382767 11 - TSS region transcription start site region 141223
Tssr141224 16 45382775 to 45382790 15 - TSS region transcription start site region 141224
Tssr141225 16 45382799 to 45382846 47 - TSS region transcription start site region 141225
Tssr141226 16 45382851 to 45382882 31 - TSS region transcription start site region 141226
Tssr141227 16 45382905 to 45382917 12 - TSS region transcription start site region 141227
Tssr141228 16 45382947 to 45382958 11 - TSS region transcription start site region 141228
Tssr141229 16 45382963 to 45382974 11 - TSS region transcription start site region 141229
Tssr4886 16 45383059 to 45383068 9 - TSS region transcription start site region 4886
Tssr141230 16 45383116 to 45383126 10 - TSS region transcription start site region 141230
Tssr141231 16 45383210 to 45383227 17 - TSS region transcription start site region 141231
Tssr141232 16 45383262 to 45383269 7 - TSS region transcription start site region 141232
Tssr141233 16 45397129 to 45397145 16 - TSS region transcription start site region 141233
D16Mit84 16 45397698 to 45397836 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 84
Cpgi8295 16 45408544 to 45408963 419 CpG island CpG island 8295
Tssr141234 16 45408932 to 45408950 18 - TSS region transcription start site region 141234
Tssr141235 16 45408955 to 45409048 93 - TSS region transcription start site region 141235
Tssr138625 16 45411520 to 45411526 6 + TSS region transcription start site region 138625
Gm5406 16 45411580 to 45412345 765 + pseudogene predicted gene 5406
Gm609 16 45412005 to 45493004 80999 - protein coding gene predicted gene 609
Gm16011 16 45426845 to 45429506 2661 - pseudogene predicted gene 16011
Tssr138626 16 45434853 to 45434854 1 + TSS region transcription start site region 138626
Tssr141236 16 45454914 to 45454926 12 - TSS region transcription start site region 141236
Tssr141237 16 45454932 to 45454974 42 - TSS region transcription start site region 141237
Tssr141238 16 45492931 to 45492948 17 - TSS region transcription start site region 141238
Tssr141239 16 45492962 to 45492993 31 - TSS region transcription start site region 141239
Gm17783 16 45511791 to 45532050 20259 - protein coding gene predicted gene, 17783
Tssr141240 16 45531982 to 45532042 60 - TSS region transcription start site region 141240
Gm6903 16 45533124 to 45534489 1365 - pseudogene predicted gene 6903
Tssr138627 16 45535292 to 45535301 9 + TSS region transcription start site region 138627
Tssr138628 16 45535303 to 45535317 14 + TSS region transcription start site region 138628
Slc9c1 16 45535309 to 45607001 71692 + protein coding gene solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
Tssr138629 16 45535325 to 45535336 11 + TSS region transcription start site region 138629
Tssr138630 16 45535340 to 45535354 14 + TSS region transcription start site region 138630