Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:45110384-46480389

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Ccdc80 16 45093407 to 45127924 34517 + protein coding gene coiled-coil domain containing 80
D530031A16Rik 16 45119462 to 45120560 1098 unclassified gene RIKEN cDNA D530031A16 gene
Slc35a5 16 45139573 to 45158676 19103 - protein coding gene solute carrier family 35, member A5
Tssr141208 16 45148568 to 45148613 45 - TSS region transcription start site region 141208
Cpgi8294 16 45158082 to 45159436 1354 CpG island CpG island 8294
Tssr141209 16 45158273 to 45158286 13 - TSS region transcription start site region 141209
Tssr138596 16 45158378 to 45158390 12 + TSS region transcription start site region 138596
Tssr141210 16 45158515 to 45158520 5 - TSS region transcription start site region 141210
Tssr141211 16 45158592 to 45158612 20 - TSS region transcription start site region 141211
Tssr141212 16 45158624 to 45158645 21 - TSS region transcription start site region 141212
Tssr141213 16 45158650 to 45158683 33 - TSS region transcription start site region 141213
Tssr138597 16 45158725 to 45158810 85 + TSS region transcription start site region 138597
Atg3 16 45158785 to 45188538 29753 + protein coding gene autophagy related 3
Tssr138598 16 45158820 to 45158839 19 + TSS region transcription start site region 138598
Tssr138599 16 45158847 to 45158862 15 + TSS region transcription start site region 138599
Tssr138600 16 45158869 to 45158921 52 + TSS region transcription start site region 138600
Tssr138601 16 45158954 to 45159001 47 + TSS region transcription start site region 138601
Tssr138602 16 45159006 to 45159017 11 + TSS region transcription start site region 138602
Tssr138603 16 45159056 to 45159079 23 + TSS region transcription start site region 138603
Tssr138604 16 45159087 to 45159110 23 + TSS region transcription start site region 138604
Tssr138605 16 45162559 to 45162565 6 + TSS region transcription start site region 138605
Tssr138606 16 45163242 to 45163288 46 + TSS region transcription start site region 138606
Tssr138607 16 45169859 to 45169903 44 + TSS region transcription start site region 138607
Tssr138608 16 45171719 to 45171736 17 + TSS region transcription start site region 138608
Tssr141214 16 45173919 to 45173937 18 - TSS region transcription start site region 141214
Tssr138609 16 45184764 to 45184790 26 + TSS region transcription start site region 138609
Tssr138610 16 45201727 to 45201729 2 + TSS region transcription start site region 138610
Gm6030 16 45205100 to 45205489 389 + pseudogene predicted gene 6030
Btla 16 45223545 to 45252895 29350 + protein coding gene B and T lymphocyte associated
Tssr141215 16 45223725 to 45223735 10 - TSS region transcription start site region 141215
Tssr138611 16 45223939 to 45223951 12 + TSS region transcription start site region 138611
Tssr138612 16 45224074 to 45224085 11 + TSS region transcription start site region 138612
Tssr138613 16 45224112 to 45224123 11 + TSS region transcription start site region 138613
Tssr138614 16 45224128 to 45224139 11 + TSS region transcription start site region 138614
Tssr138615 16 45224144 to 45224169 25 + TSS region transcription start site region 138615
Tssr138616 16 45224171 to 45224192 21 + TSS region transcription start site region 138616
Tssr138617 16 45224325 to 45224346 21 + TSS region transcription start site region 138617
Tssr138618 16 45224357 to 45224364 7 + TSS region transcription start site region 138618
Tssr141216 16 45224529 to 45224534 5 - TSS region transcription start site region 141216
Tssr138619 16 45224582 to 45224593 11 + TSS region transcription start site region 138619
Tssr141217 16 45224819 to 45224831 12 - TSS region transcription start site region 141217
Tssr138620 16 45224945 to 45224958 13 + TSS region transcription start site region 138620
Tssr138621 16 45224977 to 45224988 11 + TSS region transcription start site region 138621
Tssr138622 16 45227267 to 45227309 42 + TSS region transcription start site region 138622
Tssr138623 16 45244976 to 45244979 3 + TSS region transcription start site region 138623
Tssr141218 16 45275734 to 45275743 9 - TSS region transcription start site region 141218
Gm30636 16 45338037 to 45362407 24370 - lncRNA gene predicted gene, 30636
9530002O20Rik 16 45357034 to 45358362 1328 unclassified gene RIKEN cDNA 9530002O20 gene
Gm30760 16 45362425 to 45366379 3954 - lncRNA gene predicted gene, 30760
Tssr141219 16 45372627 to 45372638 11 - TSS region transcription start site region 141219
Tssr138624 16 45372817 to 45372826 9 + TSS region transcription start site region 138624
Cd200 16 45382135 to 45409053 26918 - protein coding gene CD200 antigen
Tssr141220 16 45382599 to 45382609 10 - TSS region transcription start site region 141220
Tssr141221 16 45382622 to 45382633 11 - TSS region transcription start site region 141221
Tssr4884 16 45382690 to 45382693 3 - TSS region transcription start site region 4884
Tssr4885 16 45382727 to 45382738 11 - TSS region transcription start site region 4885
Tssr141222 16 45382743 to 45382753 10 - TSS region transcription start site region 141222
Tssr141223 16 45382756 to 45382767 11 - TSS region transcription start site region 141223
Tssr141224 16 45382775 to 45382790 15 - TSS region transcription start site region 141224
Tssr141225 16 45382799 to 45382846 47 - TSS region transcription start site region 141225
Tssr141226 16 45382851 to 45382882 31 - TSS region transcription start site region 141226
Tssr141227 16 45382905 to 45382917 12 - TSS region transcription start site region 141227
Tssr141228 16 45382947 to 45382958 11 - TSS region transcription start site region 141228
Tssr141229 16 45382963 to 45382974 11 - TSS region transcription start site region 141229
Tssr4886 16 45383059 to 45383068 9 - TSS region transcription start site region 4886
Tssr141230 16 45383116 to 45383126 10 - TSS region transcription start site region 141230
Tssr141231 16 45383210 to 45383227 17 - TSS region transcription start site region 141231
Tssr141232 16 45383262 to 45383269 7 - TSS region transcription start site region 141232
Tssr141233 16 45397129 to 45397145 16 - TSS region transcription start site region 141233
D16Mit84 16 45397698 to 45397836 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 84
Cpgi8295 16 45408544 to 45408963 419 CpG island CpG island 8295
Tssr141234 16 45408932 to 45408950 18 - TSS region transcription start site region 141234
Tssr141235 16 45408955 to 45409048 93 - TSS region transcription start site region 141235
Tssr138625 16 45411520 to 45411526 6 + TSS region transcription start site region 138625
Gm5406 16 45411580 to 45412345 765 + pseudogene predicted gene 5406
Gm609 16 45412005 to 45493004 80999 - protein coding gene predicted gene 609
Gm16011 16 45426845 to 45429506 2661 - pseudogene predicted gene 16011
Tssr138626 16 45434853 to 45434854 1 + TSS region transcription start site region 138626
Tssr141236 16 45454914 to 45454926 12 - TSS region transcription start site region 141236
Tssr141237 16 45454932 to 45454974 42 - TSS region transcription start site region 141237
Tssr141238 16 45492931 to 45492948 17 - TSS region transcription start site region 141238
Tssr141239 16 45492962 to 45492993 31 - TSS region transcription start site region 141239
Gm17783 16 45511791 to 45532050 20259 - protein coding gene predicted gene, 17783
Tssr141240 16 45531982 to 45532042 60 - TSS region transcription start site region 141240
Gm6903 16 45533124 to 45534489 1365 - pseudogene predicted gene 6903
Tssr138627 16 45535292 to 45535301 9 + TSS region transcription start site region 138627
Tssr138628 16 45535303 to 45535317 14 + TSS region transcription start site region 138628
Slc9c1 16 45535309 to 45607001 71692 + protein coding gene solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
Tssr138629 16 45535325 to 45535336 11 + TSS region transcription start site region 138629
Tssr138630 16 45535340 to 45535354 14 + TSS region transcription start site region 138630
Tssr138631 16 45610417 to 45610438 21 + TSS region transcription start site region 138631
Gcsam 16 45610440 to 45622867 12427 + protein coding gene germinal center associated, signaling and motility
Tssr138632 16 45610441 to 45610450 9 + TSS region transcription start site region 138632
Tssr138633 16 45610456 to 45610467 11 + TSS region transcription start site region 138633
BC016579 16 45626848 to 45654068 27220 - protein coding gene cDNA sequence, BC016579
Gm49585 16 45642357 to 45642548 191 + pseudogene predicted gene, 49585
Cpgi8296 16 45653904 to 45654275 371 CpG island CpG island 8296
Tssr141241 16 45654050 to 45654061 11 - TSS region transcription start site region 141241
Tssr141242 16 45654083 to 45654096 13 - TSS region transcription start site region 141242
Tmprss7 16 45656315 to 45693658 37343 - protein coding gene transmembrane serine protease 7
D16Mit138.1 16 45690585 to 45690694 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138.1
D16Mit138 16 45690637 to 45690785 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 138
Dice1b 16 45690637 to 72477597 26786960 QTL determination of interleukin 4 commitment 1b
Tssr141243 16 45693727 to 45693743 16 - TSS region transcription start site region 141243
Tssr141244 16 45708171 to 45708219 48 - TSS region transcription start site region 141244
Tagln3 16 45711230 to 45724531 13301 - protein coding gene transgelin 3
Tssr141245 16 45724344 to 45724454 110 - TSS region transcription start site region 141245
Cpgi8297 16 45724412 to 45724648 236 CpG island CpG island 8297
Tssr141246 16 45724471 to 45724478 7 - TSS region transcription start site region 141246
Tssr141247 16 45724500 to 45724513 13 - TSS region transcription start site region 141247
Tssr141248 16 45724526 to 45724545 19 - TSS region transcription start site region 141248
Tssr141249 16 45724549 to 45724560 11 - TSS region transcription start site region 141249
Tssr141250 16 45724600 to 45724619 19 - TSS region transcription start site region 141250
Tssr4887 16 45724620 to 45724627 7 - TSS region transcription start site region 4887
Tssr141251 16 45724695 to 45724698 3 - TSS region transcription start site region 141251
Tssr141252 16 45724705 to 45724710 5 - TSS region transcription start site region 141252
Tssr141253 16 45724771 to 45724782 11 - TSS region transcription start site region 141253
Abhd10 16 45729725 to 45742955 13230 - protein coding gene abhydrolase domain containing 10
Gm15591 16 45736503 to 45737318 815 + antisense lncRNA gene predicted gene 15591
Cpgi8298 16 45742542 to 45743236 694 CpG island CpG island 8298
Tssr141254 16 45742810 to 45742821 11 - TSS region transcription start site region 141254
Tssr141255 16 45742888 to 45742947 59 - TSS region transcription start site region 141255
Phldb2 16 45746243 to 45953598 207355 - protein coding gene pleckstrin homology like domain, family B, member 2
5430404G13Rik 16 45763670 to 45765820 2150 unclassified gene RIKEN cDNA 5430404G13 gene
Tssr141256 16 45784491 to 45784504 13 - TSS region transcription start site region 141256
Tssr138634 16 45786979 to 45786988 9 + TSS region transcription start site region 138634
D130060J10Rik 16 45792569 to 45796052 3483 unclassified gene RIKEN cDNA D130060J10 gene
Tssr141257 16 45795384 to 45795389 5 - TSS region transcription start site region 141257
Tssr141258 16 45799769 to 45799773 4 - TSS region transcription start site region 141258
Tssr141259 16 45801780 to 45801790 10 - TSS region transcription start site region 141259
Tssr141260 16 45843477 to 45843481 4 - TSS region transcription start site region 141260
Cpgi8299 16 45844073 to 45844790 717 CpG island CpG island 8299
Tssr141261 16 45844228 to 45844236 8 - TSS region transcription start site region 141261
Tssr141262 16 45844303 to 45844381 78 - TSS region transcription start site region 141262
Tssr141263 16 45844970 to 45844987 17 - TSS region transcription start site region 141263
Tssr141264 16 45844997 to 45845015 18 - TSS region transcription start site region 141264
Tssr141265 16 45880712 to 45880713 1 - TSS region transcription start site region 141265
Tssr141266 16 45887487 to 45887530 43 - TSS region transcription start site region 141266
Tssr141267 16 45910461 to 45910503 42 - TSS region transcription start site region 141267
Tssr141268 16 45926408 to 45926411 3 - TSS region transcription start site region 141268
Tssr138635 16 45936307 to 45936317 10 + TSS region transcription start site region 138635
Gm15640 16 45936323 to 45939279 2956 + antisense lncRNA gene predicted gene 15640
Tssr141269 16 45937477 to 45937488 11 - TSS region transcription start site region 141269
Gm15638 16 45945565 to 45957495 11930 + antisense lncRNA gene predicted gene 15638
Tssr138636 16 45945584 to 45945641 57 + TSS region transcription start site region 138636
Tssr141270 16 45953497 to 45953562 65 - TSS region transcription start site region 141270
Tssr141271 16 45953565 to 45953603 38 - TSS region transcription start site region 141271
Plcxd2 16 45959263 to 46010218 50955 - protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 2
D16Mit126 16 45972450 to 45972589 139 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 126
Lmr12c 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12c
Lmr12 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12
Lmr12a 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12a
Lmr12b 16 45972450 to 45972589 139 QTL leishmaniasis resistance 12b
A130072N09Rik 16 45983919 to 45986492 2573 unclassified gene RIKEN cDNA A130072N09 gene
Tssr141272 16 45986445 to 45986474 29 - TSS region transcription start site region 141272
Tssr141273 16 45991358 to 45991359 1 - TSS region transcription start site region 141273
Tssr141274 16 46001807 to 46001818 11 - TSS region transcription start site region 141274
Tssr138637 16 46002034 to 46002042 8 + TSS region transcription start site region 138637
Tssr138638 16 46006511 to 46006553 42 + TSS region transcription start site region 138638
Tssr141275 16 46008899 to 46008903 4 - TSS region transcription start site region 141275
Tssr138639 16 46009094 to 46009105 11 + TSS region transcription start site region 138639
Cpgi8300 16 46010185 to 46010753 568 CpG island CpG island 8300
Tssr141276 16 46010212 to 46010223 11 - TSS region transcription start site region 141276
Tssr141277 16 46010229 to 46010251 22 - TSS region transcription start site region 141277
Tssr141278 16 46010262 to 46010284 22 - TSS region transcription start site region 141278
Tssr141279 16 46010355 to 46010437 82 - TSS region transcription start site region 141279
Tssr138640 16 46010553 to 46010580 27 + TSS region transcription start site region 138640
Tssr138641 16 46010773 to 46010776 3 + TSS region transcription start site region 138641
Gm24754 16 46018067 to 46018173 106 - snRNA gene predicted gene, 24754
4930546O09Rik 16 46021951 to 46027374 5423 unclassified non-coding RNA gene RIKEN cDNA 4930546O09 gene
Gm31198 16 46022196 to 46024423 2227 + lncRNA gene predicted gene, 31198
Cd96 16 46035657 to 46120251 84594 - protein coding gene CD96 antigen
Tssr141280 16 46038576 to 46038581 5 - TSS region transcription start site region 141280
Tssr141281 16 46038602 to 46038623 21 - TSS region transcription start site region 141281
Tssr141282 16 46039368 to 46039385 17 - TSS region transcription start site region 141282
Tssr138642 16 46039497 to 46039519 22 + TSS region transcription start site region 138642
Tssr141283 16 46049239 to 46049263 24 - TSS region transcription start site region 141283
Cpgi8301 16 46103968 to 46104159 191 CpG island CpG island 8301
Tssr138643 16 46113150 to 46113152 2 + TSS region transcription start site region 138643
Tssr141284 16 46120119 to 46120137 18 - TSS region transcription start site region 141284
Tssr141285 16 46120138 to 46120181 43 - TSS region transcription start site region 141285
Tssr141286 16 46120185 to 46120190 5 - TSS region transcription start site region 141286
Tssr141287 16 46120191 to 46120211 20 - TSS region transcription start site region 141287
Tssr141288 16 46120238 to 46120254 16 - TSS region transcription start site region 141288
Tssr4888 16 46120258 to 46120261 3 - TSS region transcription start site region 4888
Tssr141289 16 46120426 to 46120437 11 - TSS region transcription start site region 141289
Gm4737 16 46152985 to 46155077 2092 - protein coding gene predicted gene 4737
1700020B03Rik 16 46183151 to 46183603 452 unclassified gene RIKEN cDNA 1700020B03 gene
Tssr141290 16 46183588 to 46183621 33 - TSS region transcription start site region 141290
Gm26297 16 46219836 to 46219967 131 + snoRNA gene predicted gene, 26297
Nectin3 16 46387706 to 46498525 110819 - protein coding gene nectin cell adhesion molecule 3
Tssr141291 16 46433694 to 46433704 10 - TSS region transcription start site region 141291