Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:44208212-44948215

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usf3 16 44173246 to 44227465 54219 + protein coding gene upstream transcription factor family member 3
Sidt1 16 44240180 to 44333196 93016 - protein coding gene SID1 transmembrane family, member 1
Tssr141180 16 44262852 to 44262862 10 - TSS region transcription start site region 141180
Cpgi8285 16 44299548 to 44299804 256 CpG island CpG island 8285
D16Mit379 16 44321447 to 44321571 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 379
Nhil2 16 44321447 to 44986117 664670 QTL non-heme iron levels 2
Gm26732 16 44329997 to 44333050 3053 + lincRNA gene predicted gene, 26732
Cpgi8286 16 44331951 to 44332936 985 CpG island CpG island 8286
Tssr141181 16 44332625 to 44332668 43 - TSS region transcription start site region 141181
Tssr141182 16 44332669 to 44332686 17 - TSS region transcription start site region 141182
Tssr141183 16 44332703 to 44332714 11 - TSS region transcription start site region 141183
Tssr141184 16 44332842 to 44332868 26 - TSS region transcription start site region 141184
Tssr141185 16 44332925 to 44333004 79 - TSS region transcription start site region 141185
Tssr141186 16 44333010 to 44333026 16 - TSS region transcription start site region 141186
Tssr141187 16 44333135 to 44333157 22 - TSS region transcription start site region 141187
Cpgi8287 16 44347121 to 44347921 800 CpG island CpG island 8287
Tssr138550 16 44347396 to 44347479 83 + TSS region transcription start site region 138550
Spice1 16 44347399 to 44388492 41093 + protein coding gene spindle and centriole associated protein 1
Tssr138551 16 44394771 to 44394804 33 + TSS region transcription start site region 138551
Cfap44 16 44394796 to 44482428 87632 + protein coding gene cilia and flagella associated protein 44
Tssr138552 16 44394805 to 44394826 21 + TSS region transcription start site region 138552
Cpgi8288 16 44404067 to 44404415 348 CpG island CpG island 8288
Gm41455 16 44450978 to 44484881 33903 - lncRNA gene predicted gene, 41455
Tssr141188 16 44484986 to 44485018 32 - TSS region transcription start site region 141188
Boc 16 44485045 to 44558870 73825 - protein coding gene biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
Cpgi8289 16 44501468 to 44501748 280 CpG island CpG island 8289
Gm30064 16 44530873 to 44537129 6256 + lncRNA gene predicted gene, 30064
Tssr141189 16 44531122 to 44531133 11 - TSS region transcription start site region 141189
Tssr138553 16 44531222 to 44531229 7 + TSS region transcription start site region 138553
Tssr138554 16 44531253 to 44531264 11 + TSS region transcription start site region 138554
Cpgi8290 16 44557752 to 44558959 1207 CpG island CpG island 8290
Mir3081 16 44558046 to 44558129 83 - miRNA gene microRNA 3081
Tssr141190 16 44558640 to 44558686 46 - TSS region transcription start site region 141190
Tssr141191 16 44558777 to 44558799 22 - TSS region transcription start site region 141191
Tssr141192 16 44558825 to 44558851 26 - TSS region transcription start site region 141192
Tssr141193 16 44558864 to 44558875 11 - TSS region transcription start site region 141193
Tssr141194 16 44558879 to 44558905 26 - TSS region transcription start site region 141194
Tssr141195 16 44559454 to 44559462 8 - TSS region transcription start site region 141195
Tssr138555 16 44578212 to 44578215 3 + TSS region transcription start site region 138555
Rpl27a-ps3 16 44578237 to 44578673 436 + pseudogene ribosomal protein L27A, pseudogene 3
Gm30252 16 44616229 to 44622190 5961 + lncRNA gene predicted gene, 30252
Gm46571 16 44630840 to 44635447 4607 + lncRNA gene predicted gene, 46571
Gm30311 16 44659950 to 44665464 5514 + lncRNA gene predicted gene, 30311
Tssr141196 16 44703749 to 44703798 49 - TSS region transcription start site region 141196
Gm30445 16 44719099 to 44724312 5213 - lncRNA gene predicted gene, 30445
Cpgi8291 16 44724167 to 44724861 694 CpG island CpG island 8291
Tssr138556 16 44724271 to 44724325 54 + TSS region transcription start site region 138556
Nepro 16 44724301 to 44737284 12983 + protein coding gene nucleolus and neural progenitor protein
Tssr138557 16 44724335 to 44724340 5 + TSS region transcription start site region 138557
Tssr138558 16 44724569 to 44724617 48 + TSS region transcription start site region 138558
Gtpbp8 16 44736768 to 44746363 9595 - protein coding gene GTP-binding protein 8 (putative)
Cpgi8292 16 44745581 to 44746424 843 CpG island CpG island 8292
Tssr141197 16 44745931 to 44745954 23 - TSS region transcription start site region 141197
Tssr138559 16 44746075 to 44746083 8 + TSS region transcription start site region 138559
Tssr141198 16 44746230 to 44746241 11 - TSS region transcription start site region 141198
Tssr141199 16 44746253 to 44746273 20 - TSS region transcription start site region 141199
Tssr141200 16 44746278 to 44746300 22 - TSS region transcription start site region 141200
Tssr141201 16 44746310 to 44746319 9 - TSS region transcription start site region 141201
Tssr141202 16 44746337 to 44746368 31 - TSS region transcription start site region 141202
Tssr138560 16 44748304 to 44748313 9 + TSS region transcription start site region 138560
Tssr138561 16 44765732 to 44765751 19 + TSS region transcription start site region 138561
Cd200r1 16 44765736 to 44794977 29241 + protein coding gene CD200 receptor 1
Tssr138562 16 44765753 to 44765828 75 + TSS region transcription start site region 138562
Cpgi8293 16 44765825 to 44766037 212 CpG island CpG island 8293
Tssr138563 16 44765832 to 44765837 5 + TSS region transcription start site region 138563
Tssr138564 16 44765898 to 44765920 22 + TSS region transcription start site region 138564
Tssr138565 16 44766105 to 44766113 8 + TSS region transcription start site region 138565
Tssr138566 16 44766167 to 44766180 13 + TSS region transcription start site region 138566
Tssr138567 16 44771787 to 44771815 28 + TSS region transcription start site region 138567
Tssr138568 16 44773279 to 44773290 11 + TSS region transcription start site region 138568
Tssr141203 16 44774364 to 44774376 12 - TSS region transcription start site region 141203
Tssr138569 16 44774602 to 44774616 14 + TSS region transcription start site region 138569
Tssr138570 16 44775139 to 44775170 31 + TSS region transcription start site region 138570
Tssr138571 16 44779435 to 44779451 16 + TSS region transcription start site region 138571
Tssr138572 16 44786678 to 44786695 17 + TSS region transcription start site region 138572
Tssr138573 16 44787284 to 44787311 27 + TSS region transcription start site region 138573
Tssr138574 16 44794790 to 44794807 17 + TSS region transcription start site region 138574
Gm5063 16 44800674 to 44801649 975 - pseudogene predicted gene 5063
Gm19142 16 44804116 to 44805506 1390 - pseudogene predicted gene, 19142
Cd200r4 16 44811733 to 44839150 27417 + protein coding gene CD200 receptor 4
Tssr138575 16 44811738 to 44811767 29 + TSS region transcription start site region 138575
Tssr138576 16 44811770 to 44811821 51 + TSS region transcription start site region 138576
Gm5964 16 44848374 to 44849796 1422 - pseudogene predicted gene 5964
Cd200r2 16 44867097 to 44915840 48743 + protein coding gene Cd200 receptor 2
Gm17928 16 44892296 to 44892970 674 + pseudogene predicted gene, 17928
Tssr138577 16 44943665 to 44943676 11 + TSS region transcription start site region 138577
Cd200r3 16 44943678 to 44981380 37702 + protein coding gene CD200 receptor 3
Tssr138578 16 44943701 to 44943710 9 + TSS region transcription start site region 138578
Tssr138579 16 44943715 to 44943734 19 + TSS region transcription start site region 138579
Tssr138580 16 44943737 to 44943752 15 + TSS region transcription start site region 138580