Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:44189805-44599826

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usf3 16 44173246 to 44227465 54219 + protein coding gene upstream transcription factor family member 3
Cpgi8284 16 44194765 to 44194974 209 CpG island CpG island 8284
Sidt1 16 44240180 to 44333196 93016 - protein coding gene SID1 transmembrane family, member 1
Tssr141180 16 44262852 to 44262862 10 - TSS region transcription start site region 141180
Cpgi8285 16 44299548 to 44299804 256 CpG island CpG island 8285
Nhil2 16 44321447 to 44986117 664670 QTL non-heme iron levels 2
D16Mit379 16 44321447 to 44321571 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 379
Gm26732 16 44329997 to 44333050 3053 + lincRNA gene predicted gene, 26732
Cpgi8286 16 44331951 to 44332936 985 CpG island CpG island 8286
Tssr141181 16 44332625 to 44332668 43 - TSS region transcription start site region 141181
Tssr141182 16 44332669 to 44332686 17 - TSS region transcription start site region 141182
Tssr141183 16 44332703 to 44332714 11 - TSS region transcription start site region 141183
Tssr141184 16 44332842 to 44332868 26 - TSS region transcription start site region 141184
Tssr141185 16 44332925 to 44333004 79 - TSS region transcription start site region 141185
Tssr141186 16 44333010 to 44333026 16 - TSS region transcription start site region 141186
Tssr141187 16 44333135 to 44333157 22 - TSS region transcription start site region 141187
Cpgi8287 16 44347121 to 44347921 800 CpG island CpG island 8287
Tssr138550 16 44347396 to 44347479 83 + TSS region transcription start site region 138550
Spice1 16 44347399 to 44388492 41093 + protein coding gene spindle and centriole associated protein 1
Tssr138551 16 44394771 to 44394804 33 + TSS region transcription start site region 138551
Cfap44 16 44394796 to 44482428 87632 + protein coding gene cilia and flagella associated protein 44
Tssr138552 16 44394805 to 44394826 21 + TSS region transcription start site region 138552
Cpgi8288 16 44404067 to 44404415 348 CpG island CpG island 8288
Gm41455 16 44450978 to 44484881 33903 - lncRNA gene predicted gene, 41455
Tssr141188 16 44484986 to 44485018 32 - TSS region transcription start site region 141188
Boc 16 44485045 to 44558870 73825 - protein coding gene biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
Cpgi8289 16 44501468 to 44501748 280 CpG island CpG island 8289
Gm30064 16 44530873 to 44537129 6256 + lncRNA gene predicted gene, 30064
Tssr141189 16 44531122 to 44531133 11 - TSS region transcription start site region 141189
Tssr138553 16 44531222 to 44531229 7 + TSS region transcription start site region 138553
Tssr138554 16 44531253 to 44531264 11 + TSS region transcription start site region 138554
Cpgi8290 16 44557752 to 44558959 1207 CpG island CpG island 8290
Mir3081 16 44558046 to 44558129 83 - miRNA gene microRNA 3081
Tssr141190 16 44558640 to 44558686 46 - TSS region transcription start site region 141190
Tssr141191 16 44558777 to 44558799 22 - TSS region transcription start site region 141191
Tssr141192 16 44558825 to 44558851 26 - TSS region transcription start site region 141192
Tssr141193 16 44558864 to 44558875 11 - TSS region transcription start site region 141193
Tssr141194 16 44558879 to 44558905 26 - TSS region transcription start site region 141194
Tssr141195 16 44559454 to 44559462 8 - TSS region transcription start site region 141195
Tssr138555 16 44578212 to 44578215 3 + TSS region transcription start site region 138555
Rpl27a-ps3 16 44578237 to 44578673 436 + pseudogene ribosomal protein L27A, pseudogene 3