Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:44188825-44928851

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usf3 16 44173246 to 44227465 54219 + protein coding gene upstream transcription factor family member 3
Cpgi8284 16 44194765 to 44194974 209 CpG island CpG island 8284
Sidt1 16 44240180 to 44333196 93016 - protein coding gene SID1 transmembrane family, member 1
Tssr141180 16 44262852 to 44262862 10 - TSS region transcription start site region 141180
Cpgi8285 16 44299548 to 44299804 256 CpG island CpG island 8285
Nhil2 16 44321447 to 44986117 664670 QTL non-heme iron levels 2
D16Mit379 16 44321447 to 44321571 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 379
Gm26732 16 44329997 to 44333050 3053 + lincRNA gene predicted gene, 26732
Cpgi8286 16 44331951 to 44332936 985 CpG island CpG island 8286
Tssr141181 16 44332625 to 44332668 43 - TSS region transcription start site region 141181
Tssr141182 16 44332669 to 44332686 17 - TSS region transcription start site region 141182
Tssr141183 16 44332703 to 44332714 11 - TSS region transcription start site region 141183
Tssr141184 16 44332842 to 44332868 26 - TSS region transcription start site region 141184
Tssr141185 16 44332925 to 44333004 79 - TSS region transcription start site region 141185
Tssr141186 16 44333010 to 44333026 16 - TSS region transcription start site region 141186
Tssr141187 16 44333135 to 44333157 22 - TSS region transcription start site region 141187
Cpgi8287 16 44347121 to 44347921 800 CpG island CpG island 8287
Tssr138550 16 44347396 to 44347479 83 + TSS region transcription start site region 138550
Spice1 16 44347399 to 44388492 41093 + protein coding gene spindle and centriole associated protein 1
Tssr138551 16 44394771 to 44394804 33 + TSS region transcription start site region 138551
Cfap44 16 44394796 to 44482428 87632 + protein coding gene cilia and flagella associated protein 44
Tssr138552 16 44394805 to 44394826 21 + TSS region transcription start site region 138552
Cpgi8288 16 44404067 to 44404415 348 CpG island CpG island 8288
Gm41455 16 44450978 to 44484881 33903 - lncRNA gene predicted gene, 41455
Tssr141188 16 44484986 to 44485018 32 - TSS region transcription start site region 141188
Boc 16 44485045 to 44558870 73825 - protein coding gene biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
Cpgi8289 16 44501468 to 44501748 280 CpG island CpG island 8289
Gm30064 16 44530873 to 44537129 6256 + lncRNA gene predicted gene, 30064
Tssr141189 16 44531122 to 44531133 11 - TSS region transcription start site region 141189
Tssr138553 16 44531222 to 44531229 7 + TSS region transcription start site region 138553
Tssr138554 16 44531253 to 44531264 11 + TSS region transcription start site region 138554
Cpgi8290 16 44557752 to 44558959 1207 CpG island CpG island 8290
Mir3081 16 44558046 to 44558129 83 - miRNA gene microRNA 3081
Tssr141190 16 44558640 to 44558686 46 - TSS region transcription start site region 141190
Tssr141191 16 44558777 to 44558799 22 - TSS region transcription start site region 141191
Tssr141192 16 44558825 to 44558851 26 - TSS region transcription start site region 141192
Tssr141193 16 44558864 to 44558875 11 - TSS region transcription start site region 141193
Tssr141194 16 44558879 to 44558905 26 - TSS region transcription start site region 141194
Tssr141195 16 44559454 to 44559462 8 - TSS region transcription start site region 141195
Tssr138555 16 44578212 to 44578215 3 + TSS region transcription start site region 138555
Rpl27a-ps3 16 44578237 to 44578673 436 + pseudogene ribosomal protein L27A, pseudogene 3
Gm30252 16 44616229 to 44622190 5961 + lncRNA gene predicted gene, 30252
Gm46571 16 44630840 to 44635447 4607 + lncRNA gene predicted gene, 46571
Gm30311 16 44659950 to 44665464 5514 + lncRNA gene predicted gene, 30311
Tssr141196 16 44703749 to 44703798 49 - TSS region transcription start site region 141196
Gm30445 16 44719099 to 44724312 5213 - lncRNA gene predicted gene, 30445
Cpgi8291 16 44724167 to 44724861 694 CpG island CpG island 8291
Tssr138556 16 44724271 to 44724325 54 + TSS region transcription start site region 138556
Nepro 16 44724301 to 44737284 12983 + protein coding gene nucleolus and neural progenitor protein
Tssr138557 16 44724335 to 44724340 5 + TSS region transcription start site region 138557
Tssr138558 16 44724569 to 44724617 48 + TSS region transcription start site region 138558
Gtpbp8 16 44736768 to 44746363 9595 - protein coding gene GTP-binding protein 8 (putative)
Cpgi8292 16 44745581 to 44746424 843 CpG island CpG island 8292
Tssr141197 16 44745931 to 44745954 23 - TSS region transcription start site region 141197
Tssr138559 16 44746075 to 44746083 8 + TSS region transcription start site region 138559
Tssr141198 16 44746230 to 44746241 11 - TSS region transcription start site region 141198
Tssr141199 16 44746253 to 44746273 20 - TSS region transcription start site region 141199
Tssr141200 16 44746278 to 44746300 22 - TSS region transcription start site region 141200
Tssr141201 16 44746310 to 44746319 9 - TSS region transcription start site region 141201
Tssr141202 16 44746337 to 44746368 31 - TSS region transcription start site region 141202
Tssr138560 16 44748304 to 44748313 9 + TSS region transcription start site region 138560
Tssr138561 16 44765732 to 44765751 19 + TSS region transcription start site region 138561
Cd200r1 16 44765736 to 44794977 29241 + protein coding gene CD200 receptor 1
Tssr138562 16 44765753 to 44765828 75 + TSS region transcription start site region 138562
Cpgi8293 16 44765825 to 44766037 212 CpG island CpG island 8293
Tssr138563 16 44765832 to 44765837 5 + TSS region transcription start site region 138563
Tssr138564 16 44765898 to 44765920 22 + TSS region transcription start site region 138564
Tssr138565 16 44766105 to 44766113 8 + TSS region transcription start site region 138565
Tssr138566 16 44766167 to 44766180 13 + TSS region transcription start site region 138566
Tssr138567 16 44771787 to 44771815 28 + TSS region transcription start site region 138567
Tssr138568 16 44773279 to 44773290 11 + TSS region transcription start site region 138568
Tssr141203 16 44774364 to 44774376 12 - TSS region transcription start site region 141203
Tssr138569 16 44774602 to 44774616 14 + TSS region transcription start site region 138569
Tssr138570 16 44775139 to 44775170 31 + TSS region transcription start site region 138570
Tssr138571 16 44779435 to 44779451 16 + TSS region transcription start site region 138571
Tssr138572 16 44786678 to 44786695 17 + TSS region transcription start site region 138572
Tssr138573 16 44787284 to 44787311 27 + TSS region transcription start site region 138573
Tssr138574 16 44794790 to 44794807 17 + TSS region transcription start site region 138574
Gm5063 16 44800674 to 44801649 975 - pseudogene predicted gene 5063
Gm19142 16 44804116 to 44805506 1390 - pseudogene predicted gene, 19142
Cd200r4 16 44811733 to 44839150 27417 + protein coding gene CD200 receptor 4
Tssr138575 16 44811738 to 44811767 29 + TSS region transcription start site region 138575
Tssr138576 16 44811770 to 44811821 51 + TSS region transcription start site region 138576
Gm5964 16 44848374 to 44849796 1422 - pseudogene predicted gene 5964
Cd200r2 16 44867097 to 44915840 48743 + protein coding gene Cd200 receptor 2
Gm17928 16 44892296 to 44892970 674 + pseudogene predicted gene, 17928