Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:43854548-44744804

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Qtrt2 16 43861407 to 43889680 28273 - protein coding gene queuine tRNA-ribosyltransferase accessory subunit 2
Tssr141148 16 43861976 to 43861985 9 - TSS region transcription start site region 141148
Gm25989 16 43886682 to 43886814 132 - snoRNA gene predicted gene, 25989
Tssr141149 16 43889501 to 43889507 6 - TSS region transcription start site region 141149
Cpgi8278 16 43889536 to 43890151 615 CpG island CpG island 8278
Tssr141150 16 43889605 to 43889641 36 - TSS region transcription start site region 141150
Tssr141151 16 43889642 to 43889668 26 - TSS region transcription start site region 141151
Tssr141152 16 43889669 to 43889685 16 - TSS region transcription start site region 141152
Ccdc191 16 43889800 to 43964314 74514 + protein coding gene coiled-coil domain containing 191
Tssr138529 16 43889811 to 43889820 9 + TSS region transcription start site region 138529
Tssr138530 16 43889865 to 43889878 13 + TSS region transcription start site region 138530
Tssr138531 16 43889881 to 43889892 11 + TSS region transcription start site region 138531
Tssr138532 16 43889896 to 43889930 34 + TSS region transcription start site region 138532
Tssr138533 16 43889936 to 43889947 11 + TSS region transcription start site region 138533
Zdhhc23 16 43965033 to 43979791 14758 - protein coding gene zinc finger, DHHC domain containing 23
Tssr141153 16 43973913 to 43973922 9 - TSS region transcription start site region 141153
Tssr4879 16 43973954 to 43973957 3 - TSS region transcription start site region 4879
Cpgi8279 16 43979210 to 43980295 1085 CpG island CpG island 8279
4930552F14Rik 16 43979342 to 43983353 4011 unclassified gene RIKEN cDNA 4930552F14 gene
Tssr141154 16 43979748 to 43979825 77 - TSS region transcription start site region 141154
Gm46552 16 43979873 to 43983352 3479 + lncRNA gene predicted gene, 46552
Tssr141155 16 43980255 to 43980275 20 - TSS region transcription start site region 141155
Gramd1c 16 43980350 to 44063345 82995 - protein coding gene GRAM domain containing 1C
Mir3470b 16 44013852 to 44013977 125 + miRNA gene microRNA 3470b
Tssr141156 16 44016319 to 44016384 65 - TSS region transcription start site region 141156
Tssr141157 16 44016387 to 44016399 12 - TSS region transcription start site region 141157
Tssr141158 16 44027932 to 44027937 5 - TSS region transcription start site region 141158
Tssr141159 16 44027938 to 44027969 31 - TSS region transcription start site region 141159
Cpgi8280 16 44027940 to 44028095 155 CpG island CpG island 8280
Tssr141160 16 44027983 to 44027996 13 - TSS region transcription start site region 141160
Tssr141161 16 44061469 to 44061479 10 - TSS region transcription start site region 141161
Tssr141162 16 44061481 to 44061484 3 - TSS region transcription start site region 141162
Tssr141163 16 44061493 to 44061506 13 - TSS region transcription start site region 141163
Cpgi8281 16 44062998 to 44063532 534 CpG island CpG island 8281
Tssr141164 16 44065359 to 44065379 20 - TSS region transcription start site region 141164
Atp6v1a 16 44085402 to 44139705 54303 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit A
Tssr141165 16 44085996 to 44086017 21 - TSS region transcription start site region 141165
Tssr141166 16 44086094 to 44086110 16 - TSS region transcription start site region 141166
Tssr141167 16 44086565 to 44086580 15 - TSS region transcription start site region 141167
Tssr141168 16 44106194 to 44106196 2 - TSS region transcription start site region 141168
Tssr138534 16 44123540 to 44123559 19 + TSS region transcription start site region 138534
Tssr138535 16 44123566 to 44123575 9 + TSS region transcription start site region 138535
Tssr138536 16 44136808 to 44136819 11 + TSS region transcription start site region 138536
Cpgi8282 16 44138587 to 44140745 2158 CpG island CpG island 8282
Tssr141169 16 44138975 to 44138994 19 - TSS region transcription start site region 141169
Tssr141170 16 44139003 to 44139026 23 - TSS region transcription start site region 141170
Tssr141171 16 44139033 to 44139050 17 - TSS region transcription start site region 141171
Tssr141172 16 44139055 to 44139077 22 - TSS region transcription start site region 141172
Tssr138537 16 44139149 to 44139161 12 + TSS region transcription start site region 138537
Tssr141173 16 44139259 to 44139283 24 - TSS region transcription start site region 141173
Tssr141174 16 44139631 to 44139654 23 - TSS region transcription start site region 141174
Tssr141175 16 44139682 to 44139720 38 - TSS region transcription start site region 141175
Tssr141176 16 44139757 to 44139766 9 - TSS region transcription start site region 141176
Tssr138538 16 44139821 to 44139900 79 + TSS region transcription start site region 138538
Naa50 16 44139830 to 44163366 23536 + protein coding gene N(alpha)-acetyltransferase 50, NatE catalytic subunit
Tssr141177 16 44140497 to 44140508 11 - TSS region transcription start site region 141177
Tssr141178 16 44140521 to 44140556 35 - TSS region transcription start site region 141178
Tssr141179 16 44140570 to 44140584 14 - TSS region transcription start site region 141179
Tssr138539 16 44142619 to 44142630 11 + TSS region transcription start site region 138539
Tssr138540 16 44146318 to 44146322 4 + TSS region transcription start site region 138540
Tssr138541 16 44156421 to 44156443 22 + TSS region transcription start site region 138541
Tssr138542 16 44159690 to 44159726 36 + TSS region transcription start site region 138542
Tssr138543 16 44159749 to 44159765 16 + TSS region transcription start site region 138543
Tssr138544 16 44160101 to 44160114 13 + TSS region transcription start site region 138544
Tssr138545 16 44160306 to 44160325 19 + TSS region transcription start site region 138545
Tssr138546 16 44160342 to 44160368 26 + TSS region transcription start site region 138546
Tssr138547 16 44161352 to 44161399 47 + TSS region transcription start site region 138547
Cpgi8283 16 44172904 to 44173900 996 CpG island CpG island 8283
Tssr138548 16 44173239 to 44173270 31 + TSS region transcription start site region 138548
Usf3 16 44173246 to 44227465 54219 + protein coding gene upstream transcription factor family member 3
Tssr138549 16 44173271 to 44173294 23 + TSS region transcription start site region 138549
D16Mit198 16 44188691 to 44188804 113 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 198
Cpgi8284 16 44194765 to 44194974 209 CpG island CpG island 8284
Sidt1 16 44240180 to 44333196 93016 - protein coding gene SID1 transmembrane family, member 1
Tssr141180 16 44262852 to 44262862 10 - TSS region transcription start site region 141180
Cpgi8285 16 44299548 to 44299804 256 CpG island CpG island 8285
Nhil2 16 44321447 to 44986117 664670 QTL non-heme iron levels 2
D16Mit379 16 44321447 to 44321571 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 379
Gm26732 16 44329997 to 44333050 3053 + lincRNA gene predicted gene, 26732
Cpgi8286 16 44331951 to 44332936 985 CpG island CpG island 8286
Tssr141181 16 44332625 to 44332668 43 - TSS region transcription start site region 141181
Tssr141182 16 44332669 to 44332686 17 - TSS region transcription start site region 141182
Tssr141183 16 44332703 to 44332714 11 - TSS region transcription start site region 141183
Tssr141184 16 44332842 to 44332868 26 - TSS region transcription start site region 141184
Tssr141185 16 44332925 to 44333004 79 - TSS region transcription start site region 141185
Tssr141186 16 44333010 to 44333026 16 - TSS region transcription start site region 141186
Tssr141187 16 44333135 to 44333157 22 - TSS region transcription start site region 141187
Cpgi8287 16 44347121 to 44347921 800 CpG island CpG island 8287
Tssr138550 16 44347396 to 44347479 83 + TSS region transcription start site region 138550
Spice1 16 44347399 to 44388492 41093 + protein coding gene spindle and centriole associated protein 1
Tssr138551 16 44394771 to 44394804 33 + TSS region transcription start site region 138551
Cfap44 16 44394796 to 44482428 87632 + protein coding gene cilia and flagella associated protein 44
Tssr138552 16 44394805 to 44394826 21 + TSS region transcription start site region 138552
Cpgi8288 16 44404067 to 44404415 348 CpG island CpG island 8288
Gm41455 16 44450978 to 44484881 33903 - lncRNA gene predicted gene, 41455
Tssr141188 16 44484986 to 44485018 32 - TSS region transcription start site region 141188
Boc 16 44485045 to 44558870 73825 - protein coding gene biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
Cpgi8289 16 44501468 to 44501748 280 CpG island CpG island 8289
Gm30064 16 44530873 to 44537129 6256 + lncRNA gene predicted gene, 30064
Tssr141189 16 44531122 to 44531133 11 - TSS region transcription start site region 141189
Tssr138553 16 44531222 to 44531229 7 + TSS region transcription start site region 138553
Tssr138554 16 44531253 to 44531264 11 + TSS region transcription start site region 138554
Cpgi8290 16 44557752 to 44558959 1207 CpG island CpG island 8290
Mir3081 16 44558046 to 44558129 83 - miRNA gene microRNA 3081
Tssr141190 16 44558640 to 44558686 46 - TSS region transcription start site region 141190
Tssr141191 16 44558777 to 44558799 22 - TSS region transcription start site region 141191
Tssr141192 16 44558825 to 44558851 26 - TSS region transcription start site region 141192
Tssr141193 16 44558864 to 44558875 11 - TSS region transcription start site region 141193
Tssr141194 16 44558879 to 44558905 26 - TSS region transcription start site region 141194
Tssr141195 16 44559454 to 44559462 8 - TSS region transcription start site region 141195
Tssr138555 16 44578212 to 44578215 3 + TSS region transcription start site region 138555
Rpl27a-ps3 16 44578237 to 44578673 436 + pseudogene ribosomal protein L27A, pseudogene 3
Gm30252 16 44616229 to 44622190 5961 + lncRNA gene predicted gene, 30252
Gm46571 16 44630840 to 44635447 4607 + lncRNA gene predicted gene, 46571
Gm30311 16 44659950 to 44665464 5514 + lncRNA gene predicted gene, 30311
Tssr141196 16 44703749 to 44703798 49 - TSS region transcription start site region 141196
Gm30445 16 44719099 to 44724312 5213 - lncRNA gene predicted gene, 30445
Cpgi8291 16 44724167 to 44724861 694 CpG island CpG island 8291
Tssr138556 16 44724271 to 44724325 54 + TSS region transcription start site region 138556
Nepro 16 44724301 to 44737284 12983 + protein coding gene nucleolus and neural progenitor protein
Tssr138557 16 44724335 to 44724340 5 + TSS region transcription start site region 138557
Tssr138558 16 44724569 to 44724617 48 + TSS region transcription start site region 138558
Gtpbp8 16 44736768 to 44746363 9595 - protein coding gene GTP-binding protein 8 (putative)