Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:43268853-43988861

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zbtb20 16 42875881 to 43642602 766721 + protein coding gene zinc finger and BTB domain containing 20
Tssr138489 16 43299314 to 43299324 10 + TSS region transcription start site region 138489
Tssr138490 16 43302393 to 43302406 13 + TSS region transcription start site region 138490
Gm37946 16 43307935 to 43308281 346 - unclassified gene predicted gene, 37946
Gm15711 16 43312594 to 43313128 534 + pseudogene predicted gene 15711
Gm9968 16 43345887 to 43363666 17779 - antisense lncRNA gene predicted gene 9968
Tssr138491 16 43363013 to 43363024 11 + TSS region transcription start site region 138491
Tssr138492 16 43363039 to 43363073 34 + TSS region transcription start site region 138492
Tssr141138 16 43363061 to 43363068 7 - TSS region transcription start site region 141138
Tssr138493 16 43363077 to 43363129 52 + TSS region transcription start site region 138493
Tssr138494 16 43363724 to 43363729 5 + TSS region transcription start site region 138494
Tssr138495 16 43363855 to 43363888 33 + TSS region transcription start site region 138495
Tssr138496 16 43363899 to 43363917 18 + TSS region transcription start site region 138496
Tssr138497 16 43363923 to 43363934 11 + TSS region transcription start site region 138497
Tssr138498 16 43363990 to 43364017 27 + TSS region transcription start site region 138498
Tssr138499 16 43364102 to 43364139 37 + TSS region transcription start site region 138499
Tssr138500 16 43364145 to 43364157 12 + TSS region transcription start site region 138500
Tssr138501 16 43399208 to 43399220 12 + TSS region transcription start site region 138501
Gm15713 16 43410518 to 43420196 9678 - antisense lncRNA gene predicted gene 15713
D16Mit39 16 43457475 to 43457602 127 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 39
Tssr138502 16 43474226 to 43474241 15 + TSS region transcription start site region 138502
Tssr138503 16 43474291 to 43474294 3 + TSS region transcription start site region 138503
D230002P11Rik 16 43478718 to 43483030 4312 unclassified gene RIKEN cDNA D230002P11 gene
Tssr138504 16 43503304 to 43503323 19 + TSS region transcription start site region 138504
Tssr138505 16 43503380 to 43503457 77 + TSS region transcription start site region 138505
Tssr138506 16 43503481 to 43503521 40 + TSS region transcription start site region 138506
Tssr138507 16 43503607 to 43503626 19 + TSS region transcription start site region 138507
Tssr138508 16 43506432 to 43506455 23 + TSS region transcription start site region 138508
Tssr138509 16 43507065 to 43507075 10 + TSS region transcription start site region 138509
Tssr138510 16 43508118 to 43508158 40 + TSS region transcription start site region 138510
Tssr138511 16 43508661 to 43508665 4 + TSS region transcription start site region 138511
Tssr138512 16 43510188 to 43510200 12 + TSS region transcription start site region 138512
Tssr138513 16 43510267 to 43510280 13 + TSS region transcription start site region 138513
Tssr138514 16 43522583 to 43522585 2 + TSS region transcription start site region 138514
Tssr138515 16 43573765 to 43573781 16 + TSS region transcription start site region 138515
Cpgi8276 16 43609271 to 43610182 911 CpG island CpG island 8276
Tssr138516 16 43610688 to 43610708 20 + TSS region transcription start site region 138516
Tssr138517 16 43610724 to 43610743 19 + TSS region transcription start site region 138517
Cpgi8277 16 43618378 to 43618736 358 CpG island CpG island 8277
Tssr138518 16 43618944 to 43618965 21 + TSS region transcription start site region 138518
Tssr138519 16 43618988 to 43619038 50 + TSS region transcription start site region 138519
Tssr138520 16 43619043 to 43619058 15 + TSS region transcription start site region 138520
Tssr138521 16 43622972 to 43623006 34 + TSS region transcription start site region 138521
Tssr138522 16 43626645 to 43626657 12 + TSS region transcription start site region 138522
Tssr141139 16 43628853 to 43628861 8 - TSS region transcription start site region 141139
Tssr138523 16 43630273 to 43630285 12 + TSS region transcription start site region 138523
Tssr138524 16 43630312 to 43630334 22 + TSS region transcription start site region 138524
D16Mit213 16 43639253 to 43639372 119 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 213
Mir568 16 43640655 to 43640737 82 + miRNA gene microRNA 568
Tigit 16 43648867 to 43664146 15279 - protein coding gene T cell immunoreceptor with Ig and ITIM domains
Tssr141140 16 43663199 to 43663231 32 - TSS region transcription start site region 141140
Tssr141141 16 43664104 to 43664126 22 - TSS region transcription start site region 141141
Tssr141142 16 43664132 to 43664141 9 - TSS region transcription start site region 141142
Tssr141143 16 43664145 to 43664158 13 - TSS region transcription start site region 141143
Tssr141144 16 43664360 to 43664408 48 - TSS region transcription start site region 141144
Tssr138525 16 43664530 to 43664559 29 + TSS region transcription start site region 138525
Tssr141145 16 43664999 to 43665035 36 - TSS region transcription start site region 141145
Gm49734 16 43689251 to 43689396 145 - pseudogene predicted gene, 49734
Gm49735 16 43694097 to 43710832 16735 - lincRNA gene predicted gene, 49735
Tssr138526 16 43694362 to 43694373 11 + TSS region transcription start site region 138526
Tssr138527 16 43697063 to 43697065 2 + TSS region transcription start site region 138527
Tssr141146 16 43698953 to 43698962 9 - TSS region transcription start site region 141146
Tssr141147 16 43699406 to 43699452 46 - TSS region transcription start site region 141147
Drd3 16 43754026 to 43822932 68906 + protein coding gene dopamine receptor D3
Gm25996 16 43797417 to 43797533 116 + miRNA gene predicted gene, 25996
Tssr138528 16 43807397 to 43807400 3 + TSS region transcription start site region 138528
Gm26074 16 43833683 to 43833811 128 - snoRNA gene predicted gene, 26074
Qtrt2 16 43861407 to 43889680 28273 - protein coding gene queuine tRNA-ribosyltransferase accessory subunit 2
Tssr141148 16 43861976 to 43861985 9 - TSS region transcription start site region 141148
Gm25989 16 43886682 to 43886814 132 - snoRNA gene predicted gene, 25989
Tssr141149 16 43889501 to 43889507 6 - TSS region transcription start site region 141149
Cpgi8278 16 43889536 to 43890151 615 CpG island CpG island 8278
Tssr141150 16 43889605 to 43889641 36 - TSS region transcription start site region 141150
Tssr141151 16 43889642 to 43889668 26 - TSS region transcription start site region 141151
Tssr141152 16 43889669 to 43889685 16 - TSS region transcription start site region 141152
Ccdc191 16 43889800 to 43964314 74514 + protein coding gene coiled-coil domain containing 191
Tssr138529 16 43889811 to 43889820 9 + TSS region transcription start site region 138529
Tssr138530 16 43889865 to 43889878 13 + TSS region transcription start site region 138530
Tssr138531 16 43889881 to 43889892 11 + TSS region transcription start site region 138531
Tssr138532 16 43889896 to 43889930 34 + TSS region transcription start site region 138532
Tssr138533 16 43889936 to 43889947 11 + TSS region transcription start site region 138533
Zdhhc23 16 43965033 to 43979791 14758 - protein coding gene zinc finger, DHHC domain containing 23
Tssr141153 16 43973913 to 43973922 9 - TSS region transcription start site region 141153
Tssr4879 16 43973954 to 43973957 3 - TSS region transcription start site region 4879
Cpgi8279 16 43979210 to 43980295 1085 CpG island CpG island 8279
4930552F14Rik 16 43979342 to 43983353 4011 unclassified gene RIKEN cDNA 4930552F14 gene
Tssr141154 16 43979748 to 43979825 77 - TSS region transcription start site region 141154
Gm46552 16 43979873 to 43983352 3479 + lncRNA gene predicted gene, 46552
Tssr141155 16 43980255 to 43980275 20 - TSS region transcription start site region 141155
Gramd1c 16 43980350 to 44063345 82995 - protein coding gene GRAM domain containing 1C