Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:42876337-46616368

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490 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Cpgi8275 16 42874877 to 42876712 1835 CpG island CpG island 8275
Zbtb20 16 42875881 to 43642602 766721 + protein coding gene zinc finger and BTB domain containing 20
Gm19522 16 42884370 to 42912065 27695 - antisense lncRNA gene predicted gene, 19522
Tssr138466 16 42907441 to 42907478 37 + TSS region transcription start site region 138466
Tssr138467 16 42907543 to 42907562 19 + TSS region transcription start site region 138467
Tssr138468 16 42907563 to 42907684 121 + TSS region transcription start site region 138468
Tssr138469 16 42908601 to 42908621 20 + TSS region transcription start site region 138469
Tssr141137 16 42912078 to 42912089 11 - TSS region transcription start site region 141137
Tssr138470 16 42921790 to 42921795 5 + TSS region transcription start site region 138470
Tssr138471 16 42921846 to 42921856 10 + TSS region transcription start site region 138471
Tssr138472 16 42921861 to 42921868 7 + TSS region transcription start site region 138472
Tssr138473 16 42925930 to 42925936 6 + TSS region transcription start site region 138473
Tssr138474 16 42930949 to 42930970 21 + TSS region transcription start site region 138474
Tssr138475 16 42947905 to 42947908 3 + TSS region transcription start site region 138475
Tssr138476 16 42955555 to 42955565 10 + TSS region transcription start site region 138476
Tssr4877 16 42955574 to 42955585 11 + TSS region transcription start site region 4877
Tssr138477 16 42955590 to 42955608 18 + TSS region transcription start site region 138477
BC002163 16 42955631 to 42955949 318 + pseudogene cDNA sequence BC002163
D16Mit40 16 42998528 to 42998682 154 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 40
Tssr138478 16 43072166 to 43072172 6 + TSS region transcription start site region 138478
Tssr138479 16 43072194 to 43072209 15 + TSS region transcription start site region 138479
Tssr138480 16 43072222 to 43072233 11 + TSS region transcription start site region 138480
Gm25873 16 43126233 to 43126339 106 + snRNA gene predicted gene, 25873
Tssr138481 16 43176797 to 43176803 6 + TSS region transcription start site region 138481
Gm15712 16 43184579 to 43185728 1149 + pseudogene predicted gene 15712
Tssr138482 16 43230733 to 43230771 38 + TSS region transcription start site region 138482
Tssr138483 16 43235856 to 43235876 20 + TSS region transcription start site region 138483
Tssr138484 16 43235924 to 43235937 13 + TSS region transcription start site region 138484
Tssr4878 16 43235953 to 43235963 10 + TSS region transcription start site region 4878
Tssr138485 16 43235975 to 43235986 11 + TSS region transcription start site region 138485
Tssr138486 16 43236020 to 43236041 21 + TSS region transcription start site region 138486
Tssr138487 16 43247278 to 43247309 31 + TSS region transcription start site region 138487
Tssr138488 16 43253701 to 43253704 3 + TSS region transcription start site region 138488
Tssr138489 16 43299314 to 43299324 10 + TSS region transcription start site region 138489
Tssr138490 16 43302393 to 43302406 13 + TSS region transcription start site region 138490
Gm37946 16 43307935 to 43308281 346 - unclassified gene predicted gene, 37946
Gm15711 16 43312594 to 43313128 534 + pseudogene predicted gene 15711
Gm9968 16 43345887 to 43363666 17779 - antisense lncRNA gene predicted gene 9968
Tssr138491 16 43363013 to 43363024 11 + TSS region transcription start site region 138491
Tssr138492 16 43363039 to 43363073 34 + TSS region transcription start site region 138492
Tssr141138 16 43363061 to 43363068 7 - TSS region transcription start site region 141138
Tssr138493 16 43363077 to 43363129 52 + TSS region transcription start site region 138493
Tssr138494 16 43363724 to 43363729 5 + TSS region transcription start site region 138494
Tssr138495 16 43363855 to 43363888 33 + TSS region transcription start site region 138495
Tssr138496 16 43363899 to 43363917 18 + TSS region transcription start site region 138496
Tssr138497 16 43363923 to 43363934 11 + TSS region transcription start site region 138497
Tssr138498 16 43363990 to 43364017 27 + TSS region transcription start site region 138498
Tssr138499 16 43364102 to 43364139 37 + TSS region transcription start site region 138499
Tssr138500 16 43364145 to 43364157 12 + TSS region transcription start site region 138500
Tssr138501 16 43399208 to 43399220 12 + TSS region transcription start site region 138501
Gm15713 16 43410518 to 43420196 9678 - antisense lncRNA gene predicted gene 15713
D16Mit39 16 43457475 to 43457602 127 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 39
Tssr138502 16 43474226 to 43474241 15 + TSS region transcription start site region 138502
Tssr138503 16 43474291 to 43474294 3 + TSS region transcription start site region 138503
D230002P11Rik 16 43478718 to 43483030 4312 unclassified gene RIKEN cDNA D230002P11 gene
Tssr138504 16 43503304 to 43503323 19 + TSS region transcription start site region 138504
Tssr138505 16 43503380 to 43503457 77 + TSS region transcription start site region 138505
Tssr138506 16 43503481 to 43503521 40 + TSS region transcription start site region 138506
Tssr138507 16 43503607 to 43503626 19 + TSS region transcription start site region 138507
Tssr138508 16 43506432 to 43506455 23 + TSS region transcription start site region 138508
Tssr138509 16 43507065 to 43507075 10 + TSS region transcription start site region 138509
Tssr138510 16 43508118 to 43508158 40 + TSS region transcription start site region 138510
Tssr138511 16 43508661 to 43508665 4 + TSS region transcription start site region 138511
Tssr138512 16 43510188 to 43510200 12 + TSS region transcription start site region 138512
Tssr138513 16 43510267 to 43510280 13 + TSS region transcription start site region 138513
Tssr138514 16 43522583 to 43522585 2 + TSS region transcription start site region 138514
Tssr138515 16 43573765 to 43573781 16 + TSS region transcription start site region 138515
Cpgi8276 16 43609271 to 43610182 911 CpG island CpG island 8276
Tssr138516 16 43610688 to 43610708 20 + TSS region transcription start site region 138516
Tssr138517 16 43610724 to 43610743 19 + TSS region transcription start site region 138517
Cpgi8277 16 43618378 to 43618736 358 CpG island CpG island 8277
Tssr138518 16 43618944 to 43618965 21 + TSS region transcription start site region 138518
Tssr138519 16 43618988 to 43619038 50 + TSS region transcription start site region 138519
Tssr138520 16 43619043 to 43619058 15 + TSS region transcription start site region 138520
Tssr138521 16 43622972 to 43623006 34 + TSS region transcription start site region 138521
Tssr138522 16 43626645 to 43626657 12 + TSS region transcription start site region 138522
Tssr141139 16 43628853 to 43628861 8 - TSS region transcription start site region 141139
Tssr138523 16 43630273 to 43630285 12 + TSS region transcription start site region 138523
Tssr138524 16 43630312 to 43630334 22 + TSS region transcription start site region 138524
D16Mit213 16 43639253 to 43639372 119 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 213
Mir568 16 43640655 to 43640737 82 + miRNA gene microRNA 568
Tigit 16 43648867 to 43664146 15279 - protein coding gene T cell immunoreceptor with Ig and ITIM domains
Tssr141140 16 43663199 to 43663231 32 - TSS region transcription start site region 141140
Tssr141141 16 43664104 to 43664126 22 - TSS region transcription start site region 141141
Tssr141142 16 43664132 to 43664141 9 - TSS region transcription start site region 141142
Tssr141143 16 43664145 to 43664158 13 - TSS region transcription start site region 141143
Tssr141144 16 43664360 to 43664408 48 - TSS region transcription start site region 141144
Tssr138525 16 43664530 to 43664559 29 + TSS region transcription start site region 138525
Tssr141145 16 43664999 to 43665035 36 - TSS region transcription start site region 141145
Gm49734 16 43689251 to 43689396 145 - pseudogene predicted gene, 49734
Gm49735 16 43694097 to 43710832 16735 - lincRNA gene predicted gene, 49735
Tssr138526 16 43694362 to 43694373 11 + TSS region transcription start site region 138526
Tssr138527 16 43697063 to 43697065 2 + TSS region transcription start site region 138527
Tssr141146 16 43698953 to 43698962 9 - TSS region transcription start site region 141146
Tssr141147 16 43699406 to 43699452 46 - TSS region transcription start site region 141147
Drd3 16 43754026 to 43822932 68906 + protein coding gene dopamine receptor D3
Gm25996 16 43797417 to 43797533 116 + miRNA gene predicted gene, 25996
Tssr138528 16 43807397 to 43807400 3 + TSS region transcription start site region 138528
Gm26074 16 43833683 to 43833811 128 - snoRNA gene predicted gene, 26074
Qtrt2 16 43861407 to 43889680 28273 - protein coding gene queuine tRNA-ribosyltransferase accessory subunit 2
Tssr141148 16 43861976 to 43861985 9 - TSS region transcription start site region 141148
Gm25989 16 43886682 to 43886814 132 - snoRNA gene predicted gene, 25989
Tssr141149 16 43889501 to 43889507 6 - TSS region transcription start site region 141149
Cpgi8278 16 43889536 to 43890151 615 CpG island CpG island 8278
Tssr141150 16 43889605 to 43889641 36 - TSS region transcription start site region 141150
Tssr141151 16 43889642 to 43889668 26 - TSS region transcription start site region 141151
Tssr141152 16 43889669 to 43889685 16 - TSS region transcription start site region 141152
Ccdc191 16 43889800 to 43964314 74514 + protein coding gene coiled-coil domain containing 191
Tssr138529 16 43889811 to 43889820 9 + TSS region transcription start site region 138529
Tssr138530 16 43889865 to 43889878 13 + TSS region transcription start site region 138530
Tssr138531 16 43889881 to 43889892 11 + TSS region transcription start site region 138531
Tssr138532 16 43889896 to 43889930 34 + TSS region transcription start site region 138532
Tssr138533 16 43889936 to 43889947 11 + TSS region transcription start site region 138533
Zdhhc23 16 43965033 to 43979791 14758 - protein coding gene zinc finger, DHHC domain containing 23
Tssr141153 16 43973913 to 43973922 9 - TSS region transcription start site region 141153
Tssr4879 16 43973954 to 43973957 3 - TSS region transcription start site region 4879
Cpgi8279 16 43979210 to 43980295 1085 CpG island CpG island 8279
4930552F14Rik 16 43979342 to 43983353 4011 unclassified gene RIKEN cDNA 4930552F14 gene
Tssr141154 16 43979748 to 43979825 77 - TSS region transcription start site region 141154
Gm46552 16 43979873 to 43983352 3479 + lncRNA gene predicted gene, 46552
Tssr141155 16 43980255 to 43980275 20 - TSS region transcription start site region 141155
Gramd1c 16 43980350 to 44063345 82995 - protein coding gene GRAM domain containing 1C
Mir3470b 16 44013852 to 44013977 125 + miRNA gene microRNA 3470b
Tssr141156 16 44016319 to 44016384 65 - TSS region transcription start site region 141156
Tssr141157 16 44016387 to 44016399 12 - TSS region transcription start site region 141157
Tssr141158 16 44027932 to 44027937 5 - TSS region transcription start site region 141158
Tssr141159 16 44027938 to 44027969 31 - TSS region transcription start site region 141159
Cpgi8280 16 44027940 to 44028095 155 CpG island CpG island 8280
Tssr141160 16 44027983 to 44027996 13 - TSS region transcription start site region 141160
Tssr141161 16 44061469 to 44061479 10 - TSS region transcription start site region 141161
Tssr141162 16 44061481 to 44061484 3 - TSS region transcription start site region 141162
Tssr141163 16 44061493 to 44061506 13 - TSS region transcription start site region 141163
Cpgi8281 16 44062998 to 44063532 534 CpG island CpG island 8281
Tssr141164 16 44065359 to 44065379 20 - TSS region transcription start site region 141164
Atp6v1a 16 44085402 to 44139705 54303 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit A
Tssr141165 16 44085996 to 44086017 21 - TSS region transcription start site region 141165
Tssr141166 16 44086094 to 44086110 16 - TSS region transcription start site region 141166
Tssr141167 16 44086565 to 44086580 15 - TSS region transcription start site region 141167
Tssr141168 16 44106194 to 44106196 2 - TSS region transcription start site region 141168
Tssr138534 16 44123540 to 44123559 19 + TSS region transcription start site region 138534
Tssr138535 16 44123566 to 44123575 9 + TSS region transcription start site region 138535
Tssr138536 16 44136808 to 44136819 11 + TSS region transcription start site region 138536
Cpgi8282 16 44138587 to 44140745 2158 CpG island CpG island 8282
Tssr141169 16 44138975 to 44138994 19 - TSS region transcription start site region 141169
Tssr141170 16 44139003 to 44139026 23 - TSS region transcription start site region 141170
Tssr141171 16 44139033 to 44139050 17 - TSS region transcription start site region 141171
Tssr141172 16 44139055 to 44139077 22 - TSS region transcription start site region 141172
Tssr138537 16 44139149 to 44139161 12 + TSS region transcription start site region 138537
Tssr141173 16 44139259 to 44139283 24 - TSS region transcription start site region 141173
Tssr141174 16 44139631 to 44139654 23 - TSS region transcription start site region 141174
Tssr141175 16 44139682 to 44139720 38 - TSS region transcription start site region 141175
Tssr141176 16 44139757 to 44139766 9 - TSS region transcription start site region 141176
Tssr138538 16 44139821 to 44139900 79 + TSS region transcription start site region 138538
Naa50 16 44139830 to 44163366 23536 + protein coding gene N(alpha)-acetyltransferase 50, NatE catalytic subunit
Tssr141177 16 44140497 to 44140508 11 - TSS region transcription start site region 141177
Tssr141178 16 44140521 to 44140556 35 - TSS region transcription start site region 141178
Tssr141179 16 44140570 to 44140584 14 - TSS region transcription start site region 141179
Tssr138539 16 44142619 to 44142630 11 + TSS region transcription start site region 138539
Tssr138540 16 44146318 to 44146322 4 + TSS region transcription start site region 138540
Tssr138541 16 44156421 to 44156443 22 + TSS region transcription start site region 138541
Tssr138542 16 44159690 to 44159726 36 + TSS region transcription start site region 138542
Tssr138543 16 44159749 to 44159765 16 + TSS region transcription start site region 138543
Tssr138544 16 44160101 to 44160114 13 + TSS region transcription start site region 138544
Tssr138545 16 44160306 to 44160325 19 + TSS region transcription start site region 138545
Tssr138546 16 44160342 to 44160368 26 + TSS region transcription start site region 138546
Tssr138547 16 44161352 to 44161399 47 + TSS region transcription start site region 138547
Cpgi8283 16 44172904 to 44173900 996 CpG island CpG island 8283
Tssr138548 16 44173239 to 44173270 31 + TSS region transcription start site region 138548
Usf3 16 44173246 to 44227465 54219 + protein coding gene upstream transcription factor family member 3
Tssr138549 16 44173271 to 44173294 23 + TSS region transcription start site region 138549
D16Mit198 16 44188691 to 44188804 113 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 198
Cpgi8284 16 44194765 to 44194974 209 CpG island CpG island 8284
Sidt1 16 44240180 to 44333196 93016 - protein coding gene SID1 transmembrane family, member 1
Tssr141180 16 44262852 to 44262862 10 - TSS region transcription start site region 141180
Cpgi8285 16 44299548 to 44299804 256 CpG island CpG island 8285
D16Mit379 16 44321447 to 44321571 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 379
Nhil2 16 44321447 to 44986117 664670 QTL non-heme iron levels 2
Gm26732 16 44329997 to 44333050 3053 + lincRNA gene predicted gene, 26732
Cpgi8286 16 44331951 to 44332936 985 CpG island CpG island 8286
Tssr141181 16 44332625 to 44332668 43 - TSS region transcription start site region 141181
Tssr141182 16 44332669 to 44332686 17 - TSS region transcription start site region 141182
Tssr141183 16 44332703 to 44332714 11 - TSS region transcription start site region 141183
Tssr141184 16 44332842 to 44332868 26 - TSS region transcription start site region 141184
Tssr141185 16 44332925 to 44333004 79 - TSS region transcription start site region 141185
Tssr141186 16 44333010 to 44333026 16 - TSS region transcription start site region 141186
Tssr141187 16 44333135 to 44333157 22 - TSS region transcription start site region 141187
Cpgi8287 16 44347121 to 44347921 800 CpG island CpG island 8287
Tssr138550 16 44347396 to 44347479 83 + TSS region transcription start site region 138550
Spice1 16 44347399 to 44388492 41093 + protein coding gene spindle and centriole associated protein 1
Tssr138551 16 44394771 to 44394804 33 + TSS region transcription start site region 138551
Cfap44 16 44394796 to 44482428 87632 + protein coding gene cilia and flagella associated protein 44
Tssr138552 16 44394805 to 44394826 21 + TSS region transcription start site region 138552
Cpgi8288 16 44404067 to 44404415 348 CpG island CpG island 8288
Gm41455 16 44450978 to 44484881 33903 - lncRNA gene predicted gene, 41455
Tssr141188 16 44484986 to 44485018 32 - TSS region transcription start site region 141188
Boc 16 44485045 to 44558870 73825 - protein coding gene biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
Cpgi8289 16 44501468 to 44501748 280 CpG island CpG island 8289
Gm30064 16 44530873 to 44537129 6256 + lncRNA gene predicted gene, 30064
Tssr141189 16 44531122 to 44531133 11 - TSS region transcription start site region 141189