Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:4002529-4705498

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slx4 16 3979105 to 4003770 24665 - protein coding gene SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
Cpgi7904 16 4003354 to 4004172 818 CpG island CpG island 7904
Tssr139747 16 4003721 to 4003735 14 - TSS region transcription start site region 139747
Tssr139748 16 4003750 to 4003828 78 - TSS region transcription start site region 139748
Tssr136842 16 4003924 to 4003946 22 + TSS region transcription start site region 136842
Tssr139749 16 4017095 to 4017098 3 - TSS region transcription start site region 139749
Tssr136843 16 4029812 to 4029821 9 + TSS region transcription start site region 136843
Gm15879 16 4032839 to 4037847 5008 - antisense lncRNA gene predicted gene 15879
Dnase1 16 4036973 to 4040024 3051 + protein coding gene deoxyribonuclease I
Tssr136844 16 4037092 to 4037103 11 + TSS region transcription start site region 136844
Tssr136845 16 4037120 to 4037129 9 + TSS region transcription start site region 136845
Tssr136846 16 4037136 to 4037152 16 + TSS region transcription start site region 136846
Tssr136847 16 4037277 to 4037292 15 + TSS region transcription start site region 136847
Tssr4779 16 4037371 to 4037387 16 + TSS region transcription start site region 4779
Tssr139750 16 4037864 to 4037882 18 - TSS region transcription start site region 139750
Trap1 16 4039971 to 4077827 37856 - protein coding gene TNF receptor-associated protein 1
Tssr139751 16 4045157 to 4045163 6 - TSS region transcription start site region 139751
Gm23413 16 4057373 to 4057497 124 - miRNA gene predicted gene, 23413
Gm49547 16 4067343 to 4067559 216 + pseudogene predicted gene, 49547
Tssr136848 16 4068894 to 4068921 27 + TSS region transcription start site region 136848
Cpgi7905 16 4077354 to 4078098 744 CpG island CpG island 7905
Tssr139752 16 4077778 to 4077831 53 - TSS region transcription start site region 139752
Crebbp 16 4081334 to 4213413 132079 - protein coding gene CREB binding protein
Tssr139753 16 4086126 to 4086140 14 - TSS region transcription start site region 139753
Tssr139754 16 4087741 to 4087761 20 - TSS region transcription start site region 139754
Tssr139755 16 4091877 to 4091900 23 - TSS region transcription start site region 139755
Tssr139756 16 4091904 to 4091931 27 - TSS region transcription start site region 139756
Tssr139757 16 4092256 to 4092267 11 - TSS region transcription start site region 139757
Tssr139758 16 4092324 to 4092358 34 - TSS region transcription start site region 139758
Gm37186 16 4170776 to 4173636 2860 - unclassified gene predicted gene, 37186
Tssr139759 16 4211456 to 4211464 8 - TSS region transcription start site region 139759
Cpgi7906 16 4212787 to 4214764 1977 CpG island CpG island 7906
Tssr136849 16 4212812 to 4212819 7 + TSS region transcription start site region 136849
Tssr136850 16 4213370 to 4213419 49 + TSS region transcription start site region 136850
Tssr139760 16 4213951 to 4213995 44 - TSS region transcription start site region 139760
Tssr139761 16 4214034 to 4214070 36 - TSS region transcription start site region 139761
4930455F16Rik 16 4219912 to 4229116 9204 - lncRNA gene RIKEN cDNA 4930455F16 gene
Tssr139762 16 4229111 to 4229120 9 - TSS region transcription start site region 139762
Gm5766 16 4229229 to 4231205 1976 + pseudogene predicted gene 5766
Cpgi7907 16 4239516 to 4240135 619 CpG island CpG island 7907
Gm36359 16 4264712 to 4279996 15284 - lncRNA gene predicted gene, 36359
Tssr136851 16 4265698 to 4265706 8 + TSS region transcription start site region 136851
Cpgi7908 16 4267921 to 4268558 637 CpG island CpG island 7908
Tssr136852 16 4276399 to 4276410 11 + TSS region transcription start site region 136852
Tssr136853 16 4276531 to 4276549 18 + TSS region transcription start site region 136853
Adcy9 16 4287529 to 4420498 132969 - protein coding gene adenylate cyclase 9
Gm6142 16 4320356 to 4320680 324 - pseudogene predicted pseudogene 6142
Tssr139763 16 4320652 to 4320663 11 - TSS region transcription start site region 139763
Tssr139764 16 4320710 to 4320711 1 - TSS region transcription start site region 139764
Tssr139765 16 4374984 to 4374998 14 - TSS region transcription start site region 139765
Tssr136854 16 4381731 to 4381749 18 + TSS region transcription start site region 136854
Cpgi7909 16 4419010 to 4420903 1893 CpG island CpG island 7909
Tssr139766 16 4420380 to 4420399 19 - TSS region transcription start site region 139766
Tssr139767 16 4420416 to 4420441 25 - TSS region transcription start site region 139767
Cpgi7910 16 4474923 to 4475464 541 CpG island CpG island 7910
Tssr139768 16 4475125 to 4475159 34 - TSS region transcription start site region 139768
Tssr139769 16 4475161 to 4475222 61 - TSS region transcription start site region 139769
Srl 16 4480216 to 4541816 61600 - protein coding gene sarcalumenin
Tssr139770 16 4509591 to 4509596 5 - TSS region transcription start site region 139770
Tssr139771 16 4523056 to 4523075 19 - TSS region transcription start site region 139771
Tssr139772 16 4523559 to 4523573 14 - TSS region transcription start site region 139772
Gm15885 16 4539308 to 4539695 387 + pseudogene predicted gene 15885
Cpgi7911 16 4541609 to 4542166 557 CpG island CpG island 7911
Tssr139773 16 4541764 to 4541779 15 - TSS region transcription start site region 139773
Tssr139774 16 4541794 to 4541839 45 - TSS region transcription start site region 139774
Tfap4 16 4544661 to 4559854 15193 - protein coding gene transcription factor AP4
Tssr139775 16 4549406 to 4549436 30 - TSS region transcription start site region 139775
Cpgi7912 16 4558049 to 4561009 2960 CpG island CpG island 7912
Tssr136855 16 4558107 to 4558142 35 + TSS region transcription start site region 136855
Tssr139776 16 4558607 to 4558649 42 - TSS region transcription start site region 139776
Tssr136856 16 4558697 to 4558741 44 + TSS region transcription start site region 136856
Tssr136857 16 4558749 to 4558763 14 + TSS region transcription start site region 136857
Tssr139777 16 4559608 to 4559681 73 - TSS region transcription start site region 139777
Tssr139778 16 4559721 to 4559747 26 - TSS region transcription start site region 139778
Tssr139779 16 4559777 to 4559825 48 - TSS region transcription start site region 139779
Tssr139780 16 4560087 to 4560101 14 - TSS region transcription start site region 139780
Cpgi7913 16 4586498 to 4587098 600 CpG island CpG island 7913
D330022H12Rik 16 4592252 to 4594481 2229 - lncRNA gene RIKEN cDNA D330022H12 gene
Cpgi7914 16 4593804 to 4595667 1863 CpG island CpG island 7914
Tssr136858 16 4594683 to 4594735 52 + TSS region transcription start site region 136858
Glis2 16 4594713 to 4624924 30211 + protein coding gene GLIS family zinc finger 2
Tssr136859 16 4594740 to 4594759 19 + TSS region transcription start site region 136859
Tssr136860 16 4594853 to 4594884 31 + TSS region transcription start site region 136860
Pam16 16 4616464 to 4624988 8524 - protein coding gene presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
Cpgi7915 16 4624297 to 4625115 818 CpG island CpG island 7915
Tssr139781 16 4624938 to 4624972 34 - TSS region transcription start site region 139781
Tssr139782 16 4624984 to 4624991 7 - TSS region transcription start site region 139782
Coro7 16 4626884 to 4679720 52836 - protein coding gene coronin 7
D16Mit180 16 4631112 to 4631218 106 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 180
Tssr139783 16 4634376 to 4634426 50 - TSS region transcription start site region 139783
Tssr139784 16 4635413 to 4635453 40 - TSS region transcription start site region 139784
Tssr136861 16 4639937 to 4639944 7 + TSS region transcription start site region 136861
Vasn 16 4639941 to 4650802 10861 + protein coding gene vasorin
Tssr136862 16 4639956 to 4639978 22 + TSS region transcription start site region 136862
Cpgi7916 16 4640032 to 4640442 410 CpG island CpG island 7916
Tssr136863 16 4649166 to 4649180 14 + TSS region transcription start site region 136863
Tssr139785 16 4670531 to 4670581 50 - TSS region transcription start site region 139785
Cpgi7917 16 4679146 to 4679957 811 CpG island CpG island 7917
Tssr139786 16 4679660 to 4679699 39 - TSS region transcription start site region 139786
Tssr139787 16 4679703 to 4679747 44 - TSS region transcription start site region 139787
Tssr136864 16 4679826 to 4679834 8 + TSS region transcription start site region 136864
Cpgi7918 16 4683689 to 4684603 914 CpG island CpG island 7918
Dnaja3 16 4684070 to 4707695 23625 + protein coding gene DnaJ heat shock protein family (Hsp40) member A3
Tssr136865 16 4684099 to 4684137 38 + TSS region transcription start site region 136865
Tssr136866 16 4684229 to 4684236 7 + TSS region transcription start site region 136866
Tssr136867 16 4701182 to 4701195 13 + TSS region transcription start site region 136867