Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:3972277-4102292

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nlrc3 16 3945007 to 3976632 31625 - protein coding gene NLR family, CARD domain containing 3
Tssr139742 16 3976488 to 3976512 24 - TSS region transcription start site region 139742
Tssr139743 16 3976519 to 3976535 16 - TSS region transcription start site region 139743
Tssr139744 16 3976541 to 3976567 26 - TSS region transcription start site region 139744
Tssr139745 16 3976568 to 3976575 7 - TSS region transcription start site region 139745
Tssr139746 16 3976626 to 3976636 10 - TSS region transcription start site region 139746
Slx4 16 3979105 to 4003770 24665 - protein coding gene SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
Cpgi7904 16 4003354 to 4004172 818 CpG island CpG island 7904
Tssr139747 16 4003721 to 4003735 14 - TSS region transcription start site region 139747
Tssr139748 16 4003750 to 4003828 78 - TSS region transcription start site region 139748
Tssr136842 16 4003924 to 4003946 22 + TSS region transcription start site region 136842
Tssr139749 16 4017095 to 4017098 3 - TSS region transcription start site region 139749
Tssr136843 16 4029812 to 4029821 9 + TSS region transcription start site region 136843
Gm15879 16 4032839 to 4037847 5008 - antisense lncRNA gene predicted gene 15879
Dnase1 16 4036973 to 4040024 3051 + protein coding gene deoxyribonuclease I
Tssr136844 16 4037092 to 4037103 11 + TSS region transcription start site region 136844
Tssr136845 16 4037120 to 4037129 9 + TSS region transcription start site region 136845
Tssr136846 16 4037136 to 4037152 16 + TSS region transcription start site region 136846
Tssr136847 16 4037277 to 4037292 15 + TSS region transcription start site region 136847
Tssr4779 16 4037371 to 4037387 16 + TSS region transcription start site region 4779
Tssr139750 16 4037864 to 4037882 18 - TSS region transcription start site region 139750
Trap1 16 4039971 to 4077827 37856 - protein coding gene TNF receptor-associated protein 1
Tssr139751 16 4045157 to 4045163 6 - TSS region transcription start site region 139751
Gm23413 16 4057373 to 4057497 124 - miRNA gene predicted gene, 23413
Gm49547 16 4067343 to 4067559 216 + pseudogene predicted gene, 49547
Tssr136848 16 4068894 to 4068921 27 + TSS region transcription start site region 136848
Cpgi7905 16 4077354 to 4078098 744 CpG island CpG island 7905
Tssr139752 16 4077778 to 4077831 53 - TSS region transcription start site region 139752
Crebbp 16 4081334 to 4213413 132079 - protein coding gene CREB binding protein
Tssr139753 16 4086126 to 4086140 14 - TSS region transcription start site region 139753
Tssr139754 16 4087741 to 4087761 20 - TSS region transcription start site region 139754
Tssr139755 16 4091877 to 4091900 23 - TSS region transcription start site region 139755
Tssr139756 16 4091904 to 4091931 27 - TSS region transcription start site region 139756
Tssr139757 16 4092256 to 4092267 11 - TSS region transcription start site region 139757
Tssr139758 16 4092324 to 4092358 34 - TSS region transcription start site region 139758