Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:3952529-4755498

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nlrc3 16 3945007 to 3976632 31625 - protein coding gene NLR family, CARD domain containing 3
Tssr139740 16 3959456 to 3959472 16 - TSS region transcription start site region 139740
Tssr139741 16 3959476 to 3959511 35 - TSS region transcription start site region 139741
D16Mit32 16 3962915 to 3963024 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 32
Pbwg19 16 3962915 to 3963024 109 QTL postnatal body weight growth 19
Tssr139742 16 3976488 to 3976512 24 - TSS region transcription start site region 139742
Tssr139743 16 3976519 to 3976535 16 - TSS region transcription start site region 139743
Tssr139744 16 3976541 to 3976567 26 - TSS region transcription start site region 139744
Tssr139745 16 3976568 to 3976575 7 - TSS region transcription start site region 139745
Tssr139746 16 3976626 to 3976636 10 - TSS region transcription start site region 139746
Slx4 16 3979105 to 4003770 24665 - protein coding gene SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
Cpgi7904 16 4003354 to 4004172 818 CpG island CpG island 7904
Tssr139747 16 4003721 to 4003735 14 - TSS region transcription start site region 139747
Tssr139748 16 4003750 to 4003828 78 - TSS region transcription start site region 139748
Tssr136842 16 4003924 to 4003946 22 + TSS region transcription start site region 136842
Tssr139749 16 4017095 to 4017098 3 - TSS region transcription start site region 139749
Tssr136843 16 4029812 to 4029821 9 + TSS region transcription start site region 136843
Gm15879 16 4032839 to 4037847 5008 - antisense lncRNA gene predicted gene 15879
Dnase1 16 4036973 to 4040024 3051 + protein coding gene deoxyribonuclease I
Tssr136844 16 4037092 to 4037103 11 + TSS region transcription start site region 136844
Tssr136845 16 4037120 to 4037129 9 + TSS region transcription start site region 136845
Tssr136846 16 4037136 to 4037152 16 + TSS region transcription start site region 136846
Tssr136847 16 4037277 to 4037292 15 + TSS region transcription start site region 136847
Tssr4779 16 4037371 to 4037387 16 + TSS region transcription start site region 4779
Tssr139750 16 4037864 to 4037882 18 - TSS region transcription start site region 139750
Trap1 16 4039971 to 4077827 37856 - protein coding gene TNF receptor-associated protein 1
Tssr139751 16 4045157 to 4045163 6 - TSS region transcription start site region 139751
Gm23413 16 4057373 to 4057497 124 - miRNA gene predicted gene, 23413
Gm49547 16 4067343 to 4067559 216 + pseudogene predicted gene, 49547
Tssr136848 16 4068894 to 4068921 27 + TSS region transcription start site region 136848
Cpgi7905 16 4077354 to 4078098 744 CpG island CpG island 7905
Tssr139752 16 4077778 to 4077831 53 - TSS region transcription start site region 139752
Crebbp 16 4081334 to 4213413 132079 - protein coding gene CREB binding protein
Tssr139753 16 4086126 to 4086140 14 - TSS region transcription start site region 139753
Tssr139754 16 4087741 to 4087761 20 - TSS region transcription start site region 139754
Tssr139755 16 4091877 to 4091900 23 - TSS region transcription start site region 139755
Tssr139756 16 4091904 to 4091931 27 - TSS region transcription start site region 139756
Tssr139757 16 4092256 to 4092267 11 - TSS region transcription start site region 139757
Tssr139758 16 4092324 to 4092358 34 - TSS region transcription start site region 139758
Gm37186 16 4170776 to 4173636 2860 - unclassified gene predicted gene, 37186
Tssr139759 16 4211456 to 4211464 8 - TSS region transcription start site region 139759
Cpgi7906 16 4212787 to 4214764 1977 CpG island CpG island 7906
Tssr136849 16 4212812 to 4212819 7 + TSS region transcription start site region 136849
Tssr136850 16 4213370 to 4213419 49 + TSS region transcription start site region 136850
Tssr139760 16 4213951 to 4213995 44 - TSS region transcription start site region 139760
Tssr139761 16 4214034 to 4214070 36 - TSS region transcription start site region 139761
4930455F16Rik 16 4219912 to 4229116 9204 - lncRNA gene RIKEN cDNA 4930455F16 gene
Tssr139762 16 4229111 to 4229120 9 - TSS region transcription start site region 139762
Gm5766 16 4229229 to 4231205 1976 + pseudogene predicted gene 5766
Cpgi7907 16 4239516 to 4240135 619 CpG island CpG island 7907
Gm36359 16 4264712 to 4279996 15284 - lncRNA gene predicted gene, 36359
Tssr136851 16 4265698 to 4265706 8 + TSS region transcription start site region 136851
Cpgi7908 16 4267921 to 4268558 637 CpG island CpG island 7908
Tssr136852 16 4276399 to 4276410 11 + TSS region transcription start site region 136852
Tssr136853 16 4276531 to 4276549 18 + TSS region transcription start site region 136853
Adcy9 16 4287529 to 4420498 132969 - protein coding gene adenylate cyclase 9
Gm6142 16 4320356 to 4320680 324 - pseudogene predicted pseudogene 6142
Tssr139763 16 4320652 to 4320663 11 - TSS region transcription start site region 139763
Tssr139764 16 4320710 to 4320711 1 - TSS region transcription start site region 139764
Tssr139765 16 4374984 to 4374998 14 - TSS region transcription start site region 139765
Tssr136854 16 4381731 to 4381749 18 + TSS region transcription start site region 136854
Cpgi7909 16 4419010 to 4420903 1893 CpG island CpG island 7909
Tssr139766 16 4420380 to 4420399 19 - TSS region transcription start site region 139766
Tssr139767 16 4420416 to 4420441 25 - TSS region transcription start site region 139767
Cpgi7910 16 4474923 to 4475464 541 CpG island CpG island 7910
Tssr139768 16 4475125 to 4475159 34 - TSS region transcription start site region 139768
Tssr139769 16 4475161 to 4475222 61 - TSS region transcription start site region 139769
Srl 16 4480216 to 4541816 61600 - protein coding gene sarcalumenin
Tssr139770 16 4509591 to 4509596 5 - TSS region transcription start site region 139770
Tssr139771 16 4523056 to 4523075 19 - TSS region transcription start site region 139771
Tssr139772 16 4523559 to 4523573 14 - TSS region transcription start site region 139772
Gm15885 16 4539308 to 4539695 387 + pseudogene predicted gene 15885
Cpgi7911 16 4541609 to 4542166 557 CpG island CpG island 7911
Tssr139773 16 4541764 to 4541779 15 - TSS region transcription start site region 139773
Tssr139774 16 4541794 to 4541839 45 - TSS region transcription start site region 139774
Tfap4 16 4544661 to 4559854 15193 - protein coding gene transcription factor AP4
Tssr139775 16 4549406 to 4549436 30 - TSS region transcription start site region 139775
Cpgi7912 16 4558049 to 4561009 2960 CpG island CpG island 7912
Tssr136855 16 4558107 to 4558142 35 + TSS region transcription start site region 136855
Tssr139776 16 4558607 to 4558649 42 - TSS region transcription start site region 139776
Tssr136856 16 4558697 to 4558741 44 + TSS region transcription start site region 136856
Tssr136857 16 4558749 to 4558763 14 + TSS region transcription start site region 136857
Tssr139777 16 4559608 to 4559681 73 - TSS region transcription start site region 139777
Tssr139778 16 4559721 to 4559747 26 - TSS region transcription start site region 139778
Tssr139779 16 4559777 to 4559825 48 - TSS region transcription start site region 139779
Tssr139780 16 4560087 to 4560101 14 - TSS region transcription start site region 139780
Cpgi7913 16 4586498 to 4587098 600 CpG island CpG island 7913
D330022H12Rik 16 4592252 to 4594481 2229 - lncRNA gene RIKEN cDNA D330022H12 gene
Cpgi7914 16 4593804 to 4595667 1863 CpG island CpG island 7914
Tssr136858 16 4594683 to 4594735 52 + TSS region transcription start site region 136858
Glis2 16 4594713 to 4624924 30211 + protein coding gene GLIS family zinc finger 2
Tssr136859 16 4594740 to 4594759 19 + TSS region transcription start site region 136859
Tssr136860 16 4594853 to 4594884 31 + TSS region transcription start site region 136860
Pam16 16 4616464 to 4624988 8524 - protein coding gene presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
Cpgi7915 16 4624297 to 4625115 818 CpG island CpG island 7915
Tssr139781 16 4624938 to 4624972 34 - TSS region transcription start site region 139781
Tssr139782 16 4624984 to 4624991 7 - TSS region transcription start site region 139782
Coro7 16 4626884 to 4679720 52836 - protein coding gene coronin 7
D16Mit180 16 4631112 to 4631218 106 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 180
Tssr139783 16 4634376 to 4634426 50 - TSS region transcription start site region 139783
Tssr139784 16 4635413 to 4635453 40 - TSS region transcription start site region 139784
Tssr136861 16 4639937 to 4639944 7 + TSS region transcription start site region 136861
Vasn 16 4639941 to 4650802 10861 + protein coding gene vasorin
Tssr136862 16 4639956 to 4639978 22 + TSS region transcription start site region 136862
Cpgi7916 16 4640032 to 4640442 410 CpG island CpG island 7916
Tssr136863 16 4649166 to 4649180 14 + TSS region transcription start site region 136863
Tssr139785 16 4670531 to 4670581 50 - TSS region transcription start site region 139785
Cpgi7917 16 4679146 to 4679957 811 CpG island CpG island 7917
Tssr139786 16 4679660 to 4679699 39 - TSS region transcription start site region 139786
Tssr139787 16 4679703 to 4679747 44 - TSS region transcription start site region 139787
Tssr136864 16 4679826 to 4679834 8 + TSS region transcription start site region 136864
Cpgi7918 16 4683689 to 4684603 914 CpG island CpG island 7918
Dnaja3 16 4684070 to 4707695 23625 + protein coding gene DnaJ heat shock protein family (Hsp40) member A3
Tssr136865 16 4684099 to 4684137 38 + TSS region transcription start site region 136865
Tssr136866 16 4684229 to 4684236 7 + TSS region transcription start site region 136866
Tssr136867 16 4701182 to 4701195 13 + TSS region transcription start site region 136867
Tssr136868 16 4707125 to 4707130 5 + TSS region transcription start site region 136868
Nmral1 16 4711317 to 4719356 8039 - protein coding gene NmrA-like family domain containing 1
Tssr139788 16 4719043 to 4719054 11 - TSS region transcription start site region 139788
Tssr139789 16 4719078 to 4719126 48 - TSS region transcription start site region 139789
Tssr139790 16 4719128 to 4719146 18 - TSS region transcription start site region 139790
Tssr139791 16 4719148 to 4719164 16 - TSS region transcription start site region 139791
Cpgi7919 16 4726099 to 4727282 1183 CpG island CpG island 7919
Tssr136869 16 4726284 to 4726290 6 + TSS region transcription start site region 136869
Tssr136870 16 4726357 to 4726370 13 + TSS region transcription start site region 136870
Hmox2 16 4726361 to 4766741 40380 + protein coding gene heme oxygenase 2
Tssr136871 16 4726374 to 4726439 65 + TSS region transcription start site region 136871
Gm15859 16 4729869 to 4730809 940 + antisense lncRNA gene predicted gene 15859
Tssr136872 16 4731215 to 4731217 2 + TSS region transcription start site region 136872
Tssr136873 16 4734972 to 4734976 4 + TSS region transcription start site region 136873
Tssr136874 16 4738722 to 4738723 1 + TSS region transcription start site region 136874
Tssr136875 16 4741543 to 4741592 49 + TSS region transcription start site region 136875
Tssr136876 16 4741594 to 4741630 36 + TSS region transcription start site region 136876
Rapop1 16 15913189 to 3962915 -11950274 QTL radiation-induced apoptosis 1