Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38980136-43060142

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igsf11 16 38892671 to 39027159 134488 + protein coding gene immunoglobulin superfamily, member 11
Gm34258 16 38987086 to 39000126 13040 + pseudogene predicted gene, 34258
Tssr138426 16 39025789 to 39025804 15 + TSS region transcription start site region 138426
Tssr138427 16 39026188 to 39026195 7 + TSS region transcription start site region 138427
Tssr138428 16 39026743 to 39026747 4 + TSS region transcription start site region 138428
D16Dcr5 16 39106775 to 39106870 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 5
Gm36585 16 39115990 to 39121079 5089 + lncRNA gene predicted gene, 36585
D16Mit13 16 39118018 to 39118162 144 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 13
D16Mit12 16 39118021 to 39118212 191 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12
Bmd15 16 39118021 to 39118212 191 QTL bone mineral density 15
D16Mit12.2 16 39118161 to 39118277 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12.2
Tssr138429 16 39119488 to 39119491 3 + TSS region transcription start site region 138429
Gm36742 16 39187463 to 39188906 1443 - lincRNA gene predicted gene, 36742
Gm36852 16 39276875 to 39278576 1701 - lncRNA gene predicted gene, 36852
Gm41454 16 39363932 to 39391440 27508 + lncRNA gene predicted gene, 41454
Gm29855 16 39401834 to 39453569 51735 - lncRNA gene predicted gene, 29855
Gm36903 16 39446749 to 39488234 41485 + lincRNA gene predicted gene, 36903
Gm24795 16 39455015 to 39455135 120 + miRNA gene predicted gene, 24795
D16Mit135 16 39619313 to 39619462 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 135
Tssr138430 16 39777713 to 39777715 2 + TSS region transcription start site region 138430
D16Mit82 16 39783968 to 39784087 119 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 82
D16Dcr6 16 39792691 to 39792787 96 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 6
Gm8609 16 39934002 to 39934999 997 + pseudogene predicted gene 8609
Cpgi8271 16 39984264 to 39984987 723 CpG island CpG island 8271
Tssr138431 16 39984308 to 39984343 35 + TSS region transcription start site region 138431
Tssr138432 16 39984349 to 39984380 31 + TSS region transcription start site region 138432
Tssr138433 16 39984545 to 39984556 11 + TSS region transcription start site region 138433
Tssr138434 16 39984592 to 39984622 30 + TSS region transcription start site region 138434
D16Mit147 16 39999831 to 39999967 136 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 147
Tssr138435 16 40019362 to 40019364 2 + TSS region transcription start site region 138435
Gm16498 16 40069990 to 40073156 3166 unclassified gene predicted gene 16498
B230114A03Rik 16 40095913 to 40097128 1215 unclassified gene RIKEN cDNA B230114A03 gene
Tssr138436 16 40119973 to 40119977 4 + TSS region transcription start site region 138436
Gm37508 16 40127468 to 40127510 42 + unclassified gene predicted gene, 37508
Tssr138437 16 40194725 to 40194726 1 + TSS region transcription start site region 138437
Skts-fp3 16 40233519 to 73127497 32893978 QTL skin tumor susceptibility in FVB and PWK 3
D16Mit195 16 40233519 to 40233624 105 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 195
Gm22543 16 40306219 to 40306312 93 + snRNA gene predicted gene, 22543
Gm36939 16 40309433 to 40309871 438 + unclassified gene predicted gene, 36939
Gm27887 16 40367836 to 40367937 101 - miRNA gene predicted gene, 27887
Gm18235 16 40399484 to 40400742 1258 - pseudogene predicted gene, 18235
Tssr138438 16 40495712 to 40495715 3 + TSS region transcription start site region 138438
D16Mit194 16 40578772 to 40578894 122 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 194
Eae41 16 40578772 to 78218584 37639812 QTL experimental allergic encephalomyelitis susceptibility 41
D16Mit136 16 40656188 to 40656316 128 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 136
Tssr138439 16 40908184 to 40908190 6 + TSS region transcription start site region 138439
Tssr138440 16 41020136 to 41020142 6 + TSS region transcription start site region 138440
Gm27717 16 41066426 to 41066576 150 - unclassified non-coding RNA gene predicted gene, 27717
A330053N03Rik 16 41111015 to 41115880 4865 unclassified gene RIKEN cDNA A330053N03 gene
D930030D11Rik 16 41206969 to 41209394 2425 unclassified gene RIKEN cDNA D930030D11 gene
Gm26381 16 41217745 to 41217836 91 + rRNA gene predicted gene, 26381
Gm47276 16 41217777 to 41217836 59 + miRNA gene predicted gene, 47276
2900006G07Rik 16 41222159 to 41222631 472 unclassified gene RIKEN cDNA 2900006G07 gene
Tssr138441 16 41290797 to 41290801 4 + TSS region transcription start site region 138441
Gm27587 16 41299734 to 41299896 162 - unclassified non-coding RNA gene predicted gene, 27587
D16Mit38 16 41393834 to 41394016 182 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 38
D16Mit38.1 16 41393955 to 41394076 121 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 38.1
Gm28750 16 41413166 to 41431092 17926 - antisense lncRNA gene predicted gene 28750
Lsamp 16 41532779 to 42181679 648900 + protein coding gene limbic system-associated membrane protein
Tssr138442 16 41532851 to 41532865 14 + TSS region transcription start site region 138442
Tssr138443 16 41532913 to 41532972 59 + TSS region transcription start site region 138443
Tssr138444 16 41532999 to 41533069 70 + TSS region transcription start site region 138444
Cpgi8272 16 41533010 to 41533628 618 CpG island CpG island 8272
Tssr138445 16 41533075 to 41533093 18 + TSS region transcription start site region 138445
Tssr138446 16 41533140 to 41533151 11 + TSS region transcription start site region 138446
Tssr138447 16 41533302 to 41533325 23 + TSS region transcription start site region 138447
Tssr138448 16 41533328 to 41533360 32 + TSS region transcription start site region 138448
Tssr138449 16 41556853 to 41556858 5 + TSS region transcription start site region 138449
Tssr138450 16 41564728 to 41564733 5 + TSS region transcription start site region 138450
Tssr138451 16 41640001 to 41640013 12 + TSS region transcription start site region 138451
Tssr138452 16 41666309 to 41666320 11 + TSS region transcription start site region 138452
Tssr138453 16 41680966 to 41680971 5 + TSS region transcription start site region 138453
Tssr138454 16 41801853 to 41801854 1 + TSS region transcription start site region 138454
Tssr138455 16 41830533 to 41830536 3 + TSS region transcription start site region 138455
Gm46551 16 41832199 to 41841980 9781 - lncRNA gene predicted gene, 46551
Tssr138456 16 41974741 to 41974757 16 + TSS region transcription start site region 138456
Tssr138457 16 41988451 to 41988469 18 + TSS region transcription start site region 138457
Tssr138458 16 42149188 to 42149192 4 + TSS region transcription start site region 138458
Tssr138459 16 42166751 to 42166754 3 + TSS region transcription start site region 138459
Tssr138460 16 42180449 to 42180454 5 + TSS region transcription start site region 138460
Gm49737 16 42184772 to 42184917 145 - pseudogene predicted gene, 49737
Cpgi8273 16 42190180 to 42190657 477 CpG island CpG island 8273
Gm49738 16 42196691 to 42197402 711 - pseudogene predicted gene, 49738
Gap43 16 42248552 to 42340651 92099 - protein coding gene growth associated protein 43
Tssr141129 16 42249059 to 42249072 13 - TSS region transcription start site region 141129
Tssr138461 16 42258107 to 42258149 42 + TSS region transcription start site region 138461
Tssr141130 16 42290972 to 42290977 5 - TSS region transcription start site region 141130
Tssr141131 16 42292138 to 42292153 15 - TSS region transcription start site region 141131
Mir6540 16 42303362 to 42303469 107 - miRNA gene microRNA 6540
Cpgi8274 16 42313583 to 42313908 325 CpG island CpG island 8274
Tssr141132 16 42340504 to 42340564 60 - TSS region transcription start site region 141132
Tssr141133 16 42340584 to 42340591 7 - TSS region transcription start site region 141133
Tssr141134 16 42340595 to 42340630 35 - TSS region transcription start site region 141134
Tssr141135 16 42340696 to 42340723 27 - TSS region transcription start site region 141135
Tssr4876 16 42350386 to 42350387 1 + TSS region transcription start site region 4876
Diobq 16 42377454 to 82534286 40156832 QTL diet-induced obesity QTL
D16Mit125 16 42377454 to 42377603 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 125
D16Mit137 16 42482762 to 42482880 118 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 137
4930429N05Rik 16 42493228 to 42495139 1911 unclassified gene RIKEN cDNA 4930429N05 gene
5430434N17Rik 16 42509461 to 42510878 1417 unclassified gene RIKEN cDNA 5430434N17 gene
Gm29960 16 42641864 to 42652620 10756 - lncRNA gene predicted gene, 29960
Gm49739 16 42663926 to 42664135 209 + pseudogene predicted gene, 49739
4932412D23Rik 16 42725702 to 42875762 150060 - lincRNA gene RIKEN cDNA 4932412D23 gene
Tssr138462 16 42750763 to 42750764 1 + TSS region transcription start site region 138462
D16Mit83 16 42808595 to 42808785 190 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 83
D16Mit41 16 42871889 to 42872019 130 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 41
Cpgi8275 16 42874877 to 42876712 1835 CpG island CpG island 8275
Tssr141136 16 42875714 to 42875757 43 - TSS region transcription start site region 141136
Tssr138463 16 42875805 to 42875827 22 + TSS region transcription start site region 138463
Tssr138464 16 42875839 to 42875861 22 + TSS region transcription start site region 138464
Zbtb20 16 42875881 to 43642602 766721 + protein coding gene zinc finger and BTB domain containing 20
Tssr138465 16 42875882 to 42875903 21 + TSS region transcription start site region 138465
Gm19522 16 42884370 to 42912065 27695 - antisense lncRNA gene predicted gene, 19522
Tssr138466 16 42907441 to 42907478 37 + TSS region transcription start site region 138466
Tssr138467 16 42907543 to 42907562 19 + TSS region transcription start site region 138467
Tssr138468 16 42907563 to 42907684 121 + TSS region transcription start site region 138468
Tssr138469 16 42908601 to 42908621 20 + TSS region transcription start site region 138469
Tssr141137 16 42912078 to 42912089 11 - TSS region transcription start site region 141137
Tssr138470 16 42921790 to 42921795 5 + TSS region transcription start site region 138470
Tssr138471 16 42921846 to 42921856 10 + TSS region transcription start site region 138471
Tssr138472 16 42921861 to 42921868 7 + TSS region transcription start site region 138472
Tssr138473 16 42925930 to 42925936 6 + TSS region transcription start site region 138473
Tssr138474 16 42930949 to 42930970 21 + TSS region transcription start site region 138474
Tssr138475 16 42947905 to 42947908 3 + TSS region transcription start site region 138475
Tssr138476 16 42955555 to 42955565 10 + TSS region transcription start site region 138476
Tssr4877 16 42955574 to 42955585 11 + TSS region transcription start site region 4877
Tssr138477 16 42955590 to 42955608 18 + TSS region transcription start site region 138477
BC002163 16 42955631 to 42955949 318 + pseudogene cDNA sequence BC002163
D16Mit40 16 42998528 to 42998682 154 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 40