Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:3886488-4066512

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Naa60 16 3872453 to 3904781 32328 + protein coding gene N(alpha)-acetyltransferase 60, NatF catalytic subunit
Gm20695 16 3884648 to 3919517 34869 + protein coding gene predicted gene 20695
Tssr136837 16 3889704 to 3889714 10 + TSS region transcription start site region 136837
Gm41410 16 3895179 to 3897314 2135 - lncRNA gene predicted gene, 41410
Tssr139732 16 3895561 to 3895596 35 - TSS region transcription start site region 139732
1700037C18Rik 16 3905798 to 3908689 2891 - protein coding gene RIKEN cDNA 1700037C18 gene
Tssr139733 16 3907695 to 3907707 12 - TSS region transcription start site region 139733
Tssr139734 16 3907710 to 3907717 7 - TSS region transcription start site region 139734
Tssr4778 16 3907723 to 3907731 8 - TSS region transcription start site region 4778
Tssr139735 16 3907736 to 3907746 10 - TSS region transcription start site region 139735
Tssr136838 16 3907776 to 3907820 44 + TSS region transcription start site region 136838
Cpgi7903 16 3908492 to 3909322 830 CpG island CpG island 7903
Tssr139736 16 3908517 to 3908543 26 - TSS region transcription start site region 139736
Tssr139737 16 3908596 to 3908611 15 - TSS region transcription start site region 139737
Tssr139738 16 3908639 to 3908686 47 - TSS region transcription start site region 139738
Cluap1 16 3908801 to 3941147 32346 + protein coding gene clusterin associated protein 1
1700016D08Rik 16 3908825 to 3909192 367 - protein coding gene RIKEN cDNA 1700016D08 gene
Tssr136839 16 3908949 to 3909031 82 + TSS region transcription start site region 136839
Tssr136840 16 3909032 to 3909089 57 + TSS region transcription start site region 136840
Tssr136841 16 3926245 to 3926252 7 + TSS region transcription start site region 136841
Gm15538 16 3926428 to 3926740 312 + pseudogene predicted gene 15538
Gm23493 16 3927199 to 3927286 87 + miRNA gene predicted gene, 23493
Gm15539 16 3927637 to 3928166 529 + pseudogene predicted gene 15539
Gm15537 16 3927789 to 3929357 1568 - antisense lncRNA gene predicted gene 15537
Tssr139739 16 3929209 to 3929235 26 - TSS region transcription start site region 139739
Nlrc3 16 3945007 to 3976632 31625 - protein coding gene NLR family, CARD domain containing 3
Tssr139740 16 3959456 to 3959472 16 - TSS region transcription start site region 139740
Tssr139741 16 3959476 to 3959511 35 - TSS region transcription start site region 139741
D16Mit32 16 3962915 to 3963024 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 32
Pbwg19 16 3962915 to 3963024 109 QTL postnatal body weight growth 19
Tssr139742 16 3976488 to 3976512 24 - TSS region transcription start site region 139742
Tssr139743 16 3976519 to 3976535 16 - TSS region transcription start site region 139743
Tssr139744 16 3976541 to 3976567 26 - TSS region transcription start site region 139744
Tssr139745 16 3976568 to 3976575 7 - TSS region transcription start site region 139745
Tssr139746 16 3976626 to 3976636 10 - TSS region transcription start site region 139746
Slx4 16 3979105 to 4003770 24665 - protein coding gene SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
Cpgi7904 16 4003354 to 4004172 818 CpG island CpG island 7904
Tssr139747 16 4003721 to 4003735 14 - TSS region transcription start site region 139747
Tssr139748 16 4003750 to 4003828 78 - TSS region transcription start site region 139748
Tssr136842 16 4003924 to 4003946 22 + TSS region transcription start site region 136842
Tssr139749 16 4017095 to 4017098 3 - TSS region transcription start site region 139749
Tssr136843 16 4029812 to 4029821 9 + TSS region transcription start site region 136843
Gm15879 16 4032839 to 4037847 5008 - antisense lncRNA gene predicted gene 15879
Dnase1 16 4036973 to 4040024 3051 + protein coding gene deoxyribonuclease I
Tssr136844 16 4037092 to 4037103 11 + TSS region transcription start site region 136844
Tssr136845 16 4037120 to 4037129 9 + TSS region transcription start site region 136845
Tssr136846 16 4037136 to 4037152 16 + TSS region transcription start site region 136846
Tssr136847 16 4037277 to 4037292 15 + TSS region transcription start site region 136847
Tssr4779 16 4037371 to 4037387 16 + TSS region transcription start site region 4779
Tssr139750 16 4037864 to 4037882 18 - TSS region transcription start site region 139750
Trap1 16 4039971 to 4077827 37856 - protein coding gene TNF receptor-associated protein 1
Tssr139751 16 4045157 to 4045163 6 - TSS region transcription start site region 139751
Gm23413 16 4057373 to 4057497 124 - miRNA gene predicted gene, 23413
Rapop1 16 15913189 to 3962915 -11950274 QTL radiation-induced apoptosis 1