Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38734308-41234343

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8269 16 38742045 to 38742907 862 CpG island CpG island 8269
Tssr138411 16 38742254 to 38742279 25 + TSS region transcription start site region 138411
B4galt4 16 38742264 to 38769049 26785 + protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
Tssr138412 16 38742280 to 38742307 27 + TSS region transcription start site region 138412
Gm15575 16 38748729 to 38750309 1580 - pseudogene predicted gene 15575
Tssr138413 16 38761701 to 38761707 6 + TSS region transcription start site region 138413
Upk1b 16 38773182 to 38800203 27021 - protein coding gene uroplakin 1B
Tssr141113 16 38781169 to 38781180 11 - TSS region transcription start site region 141113
Tssr141114 16 38783513 to 38783525 12 - TSS region transcription start site region 141114
Tssr141115 16 38783602 to 38783613 11 - TSS region transcription start site region 141115
Tssr141116 16 38783720 to 38783736 16 - TSS region transcription start site region 141116
Tssr141117 16 38783860 to 38783866 6 - TSS region transcription start site region 141117
Tssr138414 16 38784218 to 38784243 25 + TSS region transcription start site region 138414
Tssr141118 16 38784262 to 38784283 21 - TSS region transcription start site region 141118
Tssr141119 16 38800193 to 38800209 16 - TSS region transcription start site region 141119
Tssr141120 16 38800217 to 38800228 11 - TSS region transcription start site region 141120
Tssr141121 16 38800235 to 38800246 11 - TSS region transcription start site region 141121
Tssr141122 16 38800277 to 38800286 9 - TSS region transcription start site region 141122
Tssr141123 16 38800326 to 38800337 11 - TSS region transcription start site region 141123
Tssr141124 16 38800343 to 38800358 15 - TSS region transcription start site region 141124
Tex55 16 38812206 to 38828749 16543 - protein coding gene testis expressed 55
Gm15803 16 38813990 to 38814383 393 + pseudogene predicted gene 15803
Tssr141125 16 38828725 to 38828736 11 - TSS region transcription start site region 141125
Tssr141126 16 38828745 to 38828754 9 - TSS region transcription start site region 141126
Tssr141127 16 38828756 to 38828770 14 - TSS region transcription start site region 141127
Tssr141128 16 38828780 to 38828783 3 - TSS region transcription start site region 141128
Gm15802 16 38828864 to 38875713 46849 + antisense lncRNA gene predicted gene 15802
Tssr138415 16 38828899 to 38828908 9 + TSS region transcription start site region 138415
Tssr138416 16 38828911 to 38828920 9 + TSS region transcription start site region 138416
Tssr138417 16 38892502 to 38892534 32 + TSS region transcription start site region 138417
Igsf11 16 38892671 to 39027159 134488 + protein coding gene immunoglobulin superfamily, member 11
Tssr138418 16 38901240 to 38901289 49 + TSS region transcription start site region 138418
Cpgi8270 16 38902094 to 38902825 731 CpG island CpG island 8270
Tssr138419 16 38902253 to 38902297 44 + TSS region transcription start site region 138419
Tssr138420 16 38902305 to 38902316 11 + TSS region transcription start site region 138420
Tssr138421 16 38902325 to 38902364 39 + TSS region transcription start site region 138421
Tssr138422 16 38902372 to 38902437 65 + TSS region transcription start site region 138422
Tssr138423 16 38902438 to 38902462 24 + TSS region transcription start site region 138423
Tssr138424 16 38910110 to 38910115 5 + TSS region transcription start site region 138424
Gm22500 16 38927209 to 38927307 98 + snRNA gene predicted gene, 22500
Tssr138425 16 38931890 to 38931895 5 + TSS region transcription start site region 138425
Gm34258 16 38987086 to 39000126 13040 + pseudogene predicted gene, 34258
Tssr138426 16 39025789 to 39025804 15 + TSS region transcription start site region 138426
Tssr138427 16 39026188 to 39026195 7 + TSS region transcription start site region 138427
Tssr138428 16 39026743 to 39026747 4 + TSS region transcription start site region 138428
D16Dcr5 16 39106775 to 39106870 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 5
Gm36585 16 39115990 to 39121079 5089 + lncRNA gene predicted gene, 36585
D16Mit13 16 39118018 to 39118162 144 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 13
Bmd15 16 39118021 to 39118212 191 QTL bone mineral density 15
D16Mit12 16 39118021 to 39118212 191 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12
D16Mit12.2 16 39118161 to 39118277 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12.2
Tssr138429 16 39119488 to 39119491 3 + TSS region transcription start site region 138429
Gm36742 16 39187463 to 39188906 1443 - lincRNA gene predicted gene, 36742
Gm36852 16 39276875 to 39278576 1701 - lncRNA gene predicted gene, 36852
Gm41454 16 39363932 to 39391440 27508 + lncRNA gene predicted gene, 41454
Gm29855 16 39401834 to 39453569 51735 - lncRNA gene predicted gene, 29855
Gm36903 16 39446749 to 39488234 41485 + lincRNA gene predicted gene, 36903
Gm24795 16 39455015 to 39455135 120 + miRNA gene predicted gene, 24795
D16Mit135 16 39619313 to 39619462 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 135
Tssr138430 16 39777713 to 39777715 2 + TSS region transcription start site region 138430
D16Mit82 16 39783968 to 39784087 119 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 82
D16Dcr6 16 39792691 to 39792787 96 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 6
Gm8609 16 39934002 to 39934999 997 + pseudogene predicted gene 8609
Cpgi8271 16 39984264 to 39984987 723 CpG island CpG island 8271
Tssr138431 16 39984308 to 39984343 35 + TSS region transcription start site region 138431
Tssr138432 16 39984349 to 39984380 31 + TSS region transcription start site region 138432
Tssr138433 16 39984545 to 39984556 11 + TSS region transcription start site region 138433
Tssr138434 16 39984592 to 39984622 30 + TSS region transcription start site region 138434
D16Mit147 16 39999831 to 39999967 136 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 147
Tssr138435 16 40019362 to 40019364 2 + TSS region transcription start site region 138435
Gm16498 16 40069990 to 40073156 3166 unclassified gene predicted gene 16498
B230114A03Rik 16 40095913 to 40097128 1215 unclassified gene RIKEN cDNA B230114A03 gene
Tssr138436 16 40119973 to 40119977 4 + TSS region transcription start site region 138436
Gm37508 16 40127468 to 40127510 42 + unclassified gene predicted gene, 37508
Tssr138437 16 40194725 to 40194726 1 + TSS region transcription start site region 138437
D16Mit195 16 40233519 to 40233624 105 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 195
Skts-fp3 16 40233519 to 73127497 32893978 QTL skin tumor susceptibility in FVB and PWK 3
Gm22543 16 40306219 to 40306312 93 + snRNA gene predicted gene, 22543
Gm36939 16 40309433 to 40309871 438 + unclassified gene predicted gene, 36939
Gm27887 16 40367836 to 40367937 101 - miRNA gene predicted gene, 27887
Gm18235 16 40399484 to 40400742 1258 - pseudogene predicted gene, 18235
Tssr138438 16 40495712 to 40495715 3 + TSS region transcription start site region 138438
Eae41 16 40578772 to 78218584 37639812 QTL experimental allergic encephalomyelitis susceptibility 41
D16Mit194 16 40578772 to 40578894 122 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 194
D16Mit136 16 40656188 to 40656316 128 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 136
Tssr138439 16 40908184 to 40908190 6 + TSS region transcription start site region 138439
Tssr138440 16 41020136 to 41020142 6 + TSS region transcription start site region 138440
Gm27717 16 41066426 to 41066576 150 - unclassified non-coding RNA gene predicted gene, 27717
A330053N03Rik 16 41111015 to 41115880 4865 unclassified gene RIKEN cDNA A330053N03 gene
D930030D11Rik 16 41206969 to 41209394 2425 unclassified gene RIKEN cDNA D930030D11 gene
Gm26381 16 41217745 to 41217836 91 + rRNA gene predicted gene, 26381
Gm47276 16 41217777 to 41217836 59 + miRNA gene predicted gene, 47276
2900006G07Rik 16 41222159 to 41222631 472 unclassified gene RIKEN cDNA 2900006G07 gene