Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38710789-39340804

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgap31 16 38598343 to 38713035 114692 - protein coding gene Rho GTPase activating protein 31
D16Mit90 16 38710883 to 38710979 96 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 90
Tssr138407 16 38712174 to 38712178 4 + TSS region transcription start site region 138407
Tssr138408 16 38712297 to 38712314 17 + TSS region transcription start site region 138408
Cpgi8268 16 38712337 to 38713623 1286 CpG island CpG island 8268
Tssr138409 16 38712451 to 38712454 3 + TSS region transcription start site region 138409
Tssr141098 16 38712734 to 38712745 11 - TSS region transcription start site region 141098
Tssr141099 16 38712828 to 38712839 11 - TSS region transcription start site region 141099
Tssr141100 16 38712842 to 38712860 18 - TSS region transcription start site region 141100
Tssr141101 16 38712862 to 38712903 41 - TSS region transcription start site region 141101
Tssr141102 16 38712924 to 38712937 13 - TSS region transcription start site region 141102
Tssr141103 16 38712947 to 38712978 31 - TSS region transcription start site region 141103
Tssr138410 16 38712958 to 38712962 4 + TSS region transcription start site region 138410
Tssr4875 16 38712995 to 38712997 2 - TSS region transcription start site region 4875
Tssr141104 16 38713005 to 38713016 11 - TSS region transcription start site region 141104
Tssr141105 16 38713068 to 38713083 15 - TSS region transcription start site region 141105
Tssr141106 16 38713207 to 38713218 11 - TSS region transcription start site region 141106
Tssr141107 16 38713235 to 38713304 69 - TSS region transcription start site region 141107
Tssr141108 16 38713323 to 38713342 19 - TSS region transcription start site region 141108
Tssr141109 16 38713354 to 38713363 9 - TSS region transcription start site region 141109
Tssr141110 16 38713391 to 38713407 16 - TSS region transcription start site region 141110
Tssr141111 16 38713428 to 38713439 11 - TSS region transcription start site region 141111
Tssr141112 16 38713461 to 38713492 31 - TSS region transcription start site region 141112
Cpgi8269 16 38742045 to 38742907 862 CpG island CpG island 8269
Tssr138411 16 38742254 to 38742279 25 + TSS region transcription start site region 138411
B4galt4 16 38742264 to 38769049 26785 + protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
Tssr138412 16 38742280 to 38742307 27 + TSS region transcription start site region 138412
Gm15575 16 38748729 to 38750309 1580 - pseudogene predicted gene 15575
Tssr138413 16 38761701 to 38761707 6 + TSS region transcription start site region 138413
Upk1b 16 38773182 to 38800203 27021 - protein coding gene uroplakin 1B
Tssr141113 16 38781169 to 38781180 11 - TSS region transcription start site region 141113
Tssr141114 16 38783513 to 38783525 12 - TSS region transcription start site region 141114
Tssr141115 16 38783602 to 38783613 11 - TSS region transcription start site region 141115
Tssr141116 16 38783720 to 38783736 16 - TSS region transcription start site region 141116
Tssr141117 16 38783860 to 38783866 6 - TSS region transcription start site region 141117
Tssr138414 16 38784218 to 38784243 25 + TSS region transcription start site region 138414
Tssr141118 16 38784262 to 38784283 21 - TSS region transcription start site region 141118
Tssr141119 16 38800193 to 38800209 16 - TSS region transcription start site region 141119
Tssr141120 16 38800217 to 38800228 11 - TSS region transcription start site region 141120
Tssr141121 16 38800235 to 38800246 11 - TSS region transcription start site region 141121
Tssr141122 16 38800277 to 38800286 9 - TSS region transcription start site region 141122
Tssr141123 16 38800326 to 38800337 11 - TSS region transcription start site region 141123
Tssr141124 16 38800343 to 38800358 15 - TSS region transcription start site region 141124
Tex55 16 38812206 to 38828749 16543 - protein coding gene testis expressed 55
Gm15803 16 38813990 to 38814383 393 + pseudogene predicted gene 15803
Tssr141125 16 38828725 to 38828736 11 - TSS region transcription start site region 141125
Tssr141126 16 38828745 to 38828754 9 - TSS region transcription start site region 141126
Tssr141127 16 38828756 to 38828770 14 - TSS region transcription start site region 141127
Tssr141128 16 38828780 to 38828783 3 - TSS region transcription start site region 141128
Gm15802 16 38828864 to 38875713 46849 + antisense lncRNA gene predicted gene 15802
Tssr138415 16 38828899 to 38828908 9 + TSS region transcription start site region 138415
Tssr138416 16 38828911 to 38828920 9 + TSS region transcription start site region 138416
Tssr138417 16 38892502 to 38892534 32 + TSS region transcription start site region 138417
Igsf11 16 38892671 to 39027159 134488 + protein coding gene immunoglobulin superfamily, member 11
Tssr138418 16 38901240 to 38901289 49 + TSS region transcription start site region 138418
Cpgi8270 16 38902094 to 38902825 731 CpG island CpG island 8270
Tssr138419 16 38902253 to 38902297 44 + TSS region transcription start site region 138419
Tssr138420 16 38902305 to 38902316 11 + TSS region transcription start site region 138420
Tssr138421 16 38902325 to 38902364 39 + TSS region transcription start site region 138421
Tssr138422 16 38902372 to 38902437 65 + TSS region transcription start site region 138422
Tssr138423 16 38902438 to 38902462 24 + TSS region transcription start site region 138423
Tssr138424 16 38910110 to 38910115 5 + TSS region transcription start site region 138424
Gm22500 16 38927209 to 38927307 98 + snRNA gene predicted gene, 22500
Tssr138425 16 38931890 to 38931895 5 + TSS region transcription start site region 138425
Gm34258 16 38987086 to 39000126 13040 + pseudogene predicted gene, 34258
Tssr138426 16 39025789 to 39025804 15 + TSS region transcription start site region 138426
Tssr138427 16 39026188 to 39026195 7 + TSS region transcription start site region 138427
Tssr138428 16 39026743 to 39026747 4 + TSS region transcription start site region 138428
D16Dcr5 16 39106775 to 39106870 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 5
Gm36585 16 39115990 to 39121079 5089 + lncRNA gene predicted gene, 36585
D16Mit13 16 39118018 to 39118162 144 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 13
Bmd15 16 39118021 to 39118212 191 QTL bone mineral density 15
D16Mit12 16 39118021 to 39118212 191 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12
D16Mit12.2 16 39118161 to 39118277 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12.2
Tssr138429 16 39119488 to 39119491 3 + TSS region transcription start site region 138429
Gm36742 16 39187463 to 39188906 1443 - lincRNA gene predicted gene, 36742
Gm36852 16 39276875 to 39278576 1701 - lncRNA gene predicted gene, 36852