Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38352520-38542568

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cox17 16 38346991 to 38352763 5772 + protein coding gene cytochrome c oxidase assembly protein 17, copper chaperone
Gm21987 16 38347040 to 38362297 15257 + protein coding gene predicted gene 21987
Tssr138376 16 38353098 to 38353139 41 + TSS region transcription start site region 138376
Tssr138377 16 38362164 to 38362178 14 + TSS region transcription start site region 138377
Tssr138378 16 38362179 to 38362196 17 + TSS region transcription start site region 138378
Tssr138379 16 38362205 to 38362230 25 + TSS region transcription start site region 138379
Popdc2 16 38362209 to 38378216 16007 + protein coding gene popeye domain containing 2
Tssr138380 16 38362234 to 38362251 17 + TSS region transcription start site region 138380
Tssr138381 16 38371973 to 38372006 33 + TSS region transcription start site region 138381
Cpgi8258 16 38373814 to 38374362 548 CpG island CpG island 8258
Tssr141062 16 38376847 to 38376853 6 - TSS region transcription start site region 141062
Tssr141063 16 38394297 to 38394332 35 - TSS region transcription start site region 141063
Tssr141064 16 38396048 to 38396055 7 - TSS region transcription start site region 141064
Pla1a 16 38396117 to 38433145 37028 - protein coding gene phospholipase A1 member A
Tssr141065 16 38396201 to 38396222 21 - TSS region transcription start site region 141065
Tssr4871 16 38396386 to 38396428 42 + TSS region transcription start site region 4871
Tssr4872 16 38396515 to 38396524 9 + TSS region transcription start site region 4872
Tssr4873 16 38399620 to 38399628 8 - TSS region transcription start site region 4873
Tssr141066 16 38400074 to 38400089 15 - TSS region transcription start site region 141066
Tssr4874 16 38403964 to 38403978 14 + TSS region transcription start site region 4874
Tssr141067 16 38406810 to 38406830 20 - TSS region transcription start site region 141067
Tssr141068 16 38407678 to 38407696 18 - TSS region transcription start site region 141068
Tssr141069 16 38407703 to 38407738 35 - TSS region transcription start site region 141069
Tssr141070 16 38432879 to 38432919 40 - TSS region transcription start site region 141070
Tssr141071 16 38433153 to 38433175 22 - TSS region transcription start site region 141071
Gm36333 16 38433289 to 38440683 7394 + lncRNA gene predicted gene, 36333
D16Mit59 16 38433890 to 38434074 184 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 59
Tssr138382 16 38443399 to 38443450 51 + TSS region transcription start site region 138382
Tssr141072 16 38443922 to 38443929 7 - TSS region transcription start site region 141072
Tssr138383 16 38444278 to 38444304 26 + TSS region transcription start site region 138383
Tssr138384 16 38444305 to 38444319 14 + TSS region transcription start site region 138384
D16Mit1003 16 38444629 to 38444730 101 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1003
Tssr138385 16 38445346 to 38445355 9 + TSS region transcription start site region 138385
Adprh 16 38445399 to 38452689 7290 - protein coding gene ADP-ribosylarginine hydrolase
Tssr141073 16 38445940 to 38445969 29 - TSS region transcription start site region 141073
Tssr141074 16 38447446 to 38447490 44 - TSS region transcription start site region 141074
Tssr141075 16 38447520 to 38447568 48 - TSS region transcription start site region 141075
Tssr141076 16 38447572 to 38447600 28 - TSS region transcription start site region 141076
Tssr141077 16 38447602 to 38447630 28 - TSS region transcription start site region 141077
Tssr141078 16 38447670 to 38447681 11 - TSS region transcription start site region 141078
Tssr141079 16 38448429 to 38448436 7 - TSS region transcription start site region 141079
D930030I03Rik 16 38451982 to 38453494 1512 + antisense lncRNA gene RIKEN cDNA D930030I03 gene
Cpgi8259 16 38452344 to 38453269 925 CpG island CpG island 8259
Tssr141080 16 38452612 to 38452675 63 - TSS region transcription start site region 141080
Tssr141081 16 38452683 to 38452704 21 - TSS region transcription start site region 141081
Tssr138386 16 38452796 to 38452831 35 + TSS region transcription start site region 138386
Tssr138387 16 38452884 to 38452911 27 + TSS region transcription start site region 138387
Tssr138388 16 38457425 to 38457471 46 + TSS region transcription start site region 138388
Cd80 16 38457431 to 38495958 38527 + protein coding gene CD80 antigen
Tssr141082 16 38458671 to 38458684 13 - TSS region transcription start site region 141082
Tssr138389 16 38458797 to 38458825 28 + TSS region transcription start site region 138389
Tssr138390 16 38458887 to 38458911 24 + TSS region transcription start site region 138390
Tssr138391 16 38458927 to 38458980 53 + TSS region transcription start site region 138391
Gm8590 16 38476490 to 38477721 1231 + pseudogene predicted gene 8590
Cpgi8260 16 38476493 to 38476777 284 CpG island CpG island 8260
Gm41453 16 38479749 to 38482631 2882 - lncRNA gene predicted gene, 41453
Cpgi8261 16 38483136 to 38483810 674 CpG island CpG island 8261
Tssr138392 16 38483171 to 38483185 14 + TSS region transcription start site region 138392
Ck-ps3 16 38483182 to 38484596 1414 + pseudogene creatine kinase pseudogene 3
Cpgi8262 16 38484108 to 38484511 403 CpG island CpG island 8262
Timmdc1 16 38498347 to 38522663 24316 - protein coding gene translocase of inner mitochondrial membrane domain containing 1
Gm15953 16 38512567 to 38514294 1727 + pseudogene predicted gene 15953
Cpgi8263 16 38522157 to 38523091 934 CpG island CpG island 8263
Tssr141083 16 38522587 to 38522652 65 - TSS region transcription start site region 141083
Tssr141084 16 38522662 to 38522683 21 - TSS region transcription start site region 141084
Tssr138393 16 38522779 to 38522801 22 + TSS region transcription start site region 138393
Poglut1 16 38525137 to 38550258 25121 - protein coding gene protein O-glucosyltransferase 1
9430076D03Rik 16 38527731 to 38528708 977 unclassified gene RIKEN cDNA 9430076D03 gene
Tssr141085 16 38528049 to 38528050 1 - TSS region transcription start site region 141085
C030024C20Rik 16 38533115 to 38533650 535 unclassified gene RIKEN cDNA C030024C20 gene