Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38293968-41274087

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234 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr1i2 16 38248323 to 38294824 46501 - protein coding gene nuclear receptor subfamily 1, group I, member 2
Tssr141058 16 38294774 to 38294838 64 - TSS region transcription start site region 141058
Tssr141059 16 38294843 to 38294854 11 - TSS region transcription start site region 141059
Maats1 16 38297754 to 38341860 44106 - protein coding gene MYCBP-associated, testis expressed 1
Maats1os 16 38302616 to 38305020 2404 + antisense lncRNA gene MYCBP-associated, testis expressed 1, opposite strand
Cpgi8254 16 38304806 to 38304962 156 CpG island CpG island 8254
Cpgi8255 16 38306645 to 38306963 318 CpG island CpG island 8255
Cpgi8256 16 38341454 to 38341938 484 CpG island CpG island 8256
Tssr141060 16 38341813 to 38341859 46 - TSS region transcription start site region 141060
Tssr141061 16 38341864 to 38341871 7 - TSS region transcription start site region 141061
Cpgi8257 16 38346821 to 38347378 557 CpG island CpG island 8257
Tssr138373 16 38346986 to 38347050 64 + TSS region transcription start site region 138373
Cox17 16 38346991 to 38352763 5772 + protein coding gene cytochrome c oxidase assembly protein 17, copper chaperone
Gm21987 16 38347040 to 38362297 15257 + protein coding gene predicted gene 21987
Tssr138374 16 38347073 to 38347084 11 + TSS region transcription start site region 138374
Tssr138375 16 38347255 to 38347260 5 + TSS region transcription start site region 138375
Tssr138376 16 38353098 to 38353139 41 + TSS region transcription start site region 138376
Tssr138377 16 38362164 to 38362178 14 + TSS region transcription start site region 138377
Tssr138378 16 38362179 to 38362196 17 + TSS region transcription start site region 138378
Tssr138379 16 38362205 to 38362230 25 + TSS region transcription start site region 138379
Popdc2 16 38362209 to 38378216 16007 + protein coding gene popeye domain containing 2
Tssr138380 16 38362234 to 38362251 17 + TSS region transcription start site region 138380
Tssr138381 16 38371973 to 38372006 33 + TSS region transcription start site region 138381
Cpgi8258 16 38373814 to 38374362 548 CpG island CpG island 8258
Tssr141062 16 38376847 to 38376853 6 - TSS region transcription start site region 141062
Tssr141063 16 38394297 to 38394332 35 - TSS region transcription start site region 141063
Tssr141064 16 38396048 to 38396055 7 - TSS region transcription start site region 141064
Pla1a 16 38396117 to 38433145 37028 - protein coding gene phospholipase A1 member A
Tssr141065 16 38396201 to 38396222 21 - TSS region transcription start site region 141065
Tssr4871 16 38396386 to 38396428 42 + TSS region transcription start site region 4871
Tssr4872 16 38396515 to 38396524 9 + TSS region transcription start site region 4872
Tssr4873 16 38399620 to 38399628 8 - TSS region transcription start site region 4873
Tssr141066 16 38400074 to 38400089 15 - TSS region transcription start site region 141066
Tssr4874 16 38403964 to 38403978 14 + TSS region transcription start site region 4874
Tssr141067 16 38406810 to 38406830 20 - TSS region transcription start site region 141067
Tssr141068 16 38407678 to 38407696 18 - TSS region transcription start site region 141068
Tssr141069 16 38407703 to 38407738 35 - TSS region transcription start site region 141069
Tssr141070 16 38432879 to 38432919 40 - TSS region transcription start site region 141070
Tssr141071 16 38433153 to 38433175 22 - TSS region transcription start site region 141071
Gm36333 16 38433289 to 38440683 7394 + lncRNA gene predicted gene, 36333
D16Mit59 16 38433890 to 38434074 184 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 59
Tssr138382 16 38443399 to 38443450 51 + TSS region transcription start site region 138382
Tssr141072 16 38443922 to 38443929 7 - TSS region transcription start site region 141072
Tssr138383 16 38444278 to 38444304 26 + TSS region transcription start site region 138383
Tssr138384 16 38444305 to 38444319 14 + TSS region transcription start site region 138384
D16Mit1003 16 38444629 to 38444730 101 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1003
Tssr138385 16 38445346 to 38445355 9 + TSS region transcription start site region 138385
Adprh 16 38445399 to 38452689 7290 - protein coding gene ADP-ribosylarginine hydrolase
Tssr141073 16 38445940 to 38445969 29 - TSS region transcription start site region 141073
Tssr141074 16 38447446 to 38447490 44 - TSS region transcription start site region 141074
Tssr141075 16 38447520 to 38447568 48 - TSS region transcription start site region 141075
Tssr141076 16 38447572 to 38447600 28 - TSS region transcription start site region 141076
Tssr141077 16 38447602 to 38447630 28 - TSS region transcription start site region 141077
Tssr141078 16 38447670 to 38447681 11 - TSS region transcription start site region 141078
Tssr141079 16 38448429 to 38448436 7 - TSS region transcription start site region 141079
D930030I03Rik 16 38451982 to 38453494 1512 + antisense lncRNA gene RIKEN cDNA D930030I03 gene
Cpgi8259 16 38452344 to 38453269 925 CpG island CpG island 8259
Tssr141080 16 38452612 to 38452675 63 - TSS region transcription start site region 141080
Tssr141081 16 38452683 to 38452704 21 - TSS region transcription start site region 141081
Tssr138386 16 38452796 to 38452831 35 + TSS region transcription start site region 138386
Tssr138387 16 38452884 to 38452911 27 + TSS region transcription start site region 138387
Tssr138388 16 38457425 to 38457471 46 + TSS region transcription start site region 138388
Cd80 16 38457431 to 38495958 38527 + protein coding gene CD80 antigen
Tssr141082 16 38458671 to 38458684 13 - TSS region transcription start site region 141082
Tssr138389 16 38458797 to 38458825 28 + TSS region transcription start site region 138389
Tssr138390 16 38458887 to 38458911 24 + TSS region transcription start site region 138390
Tssr138391 16 38458927 to 38458980 53 + TSS region transcription start site region 138391
Gm8590 16 38476490 to 38477721 1231 + pseudogene predicted gene 8590
Cpgi8260 16 38476493 to 38476777 284 CpG island CpG island 8260
Gm41453 16 38479749 to 38482631 2882 - lncRNA gene predicted gene, 41453
Cpgi8261 16 38483136 to 38483810 674 CpG island CpG island 8261
Tssr138392 16 38483171 to 38483185 14 + TSS region transcription start site region 138392
Ck-ps3 16 38483182 to 38484596 1414 + pseudogene creatine kinase pseudogene 3
Cpgi8262 16 38484108 to 38484511 403 CpG island CpG island 8262
Timmdc1 16 38498347 to 38522663 24316 - protein coding gene translocase of inner mitochondrial membrane domain containing 1
Gm15953 16 38512567 to 38514294 1727 + pseudogene predicted gene 15953
Cpgi8263 16 38522157 to 38523091 934 CpG island CpG island 8263
Tssr141083 16 38522587 to 38522652 65 - TSS region transcription start site region 141083
Tssr141084 16 38522662 to 38522683 21 - TSS region transcription start site region 141084
Tssr138393 16 38522779 to 38522801 22 + TSS region transcription start site region 138393
Poglut1 16 38525137 to 38550258 25121 - protein coding gene protein O-glucosyltransferase 1
9430076D03Rik 16 38527731 to 38528708 977 unclassified gene RIKEN cDNA 9430076D03 gene
Tssr141085 16 38528049 to 38528050 1 - TSS region transcription start site region 141085
C030024C20Rik 16 38533115 to 38533650 535 unclassified gene RIKEN cDNA C030024C20 gene
Cpgi8264 16 38549705 to 38550391 686 CpG island CpG island 8264
Tssr141086 16 38550142 to 38550168 26 - TSS region transcription start site region 141086
Tssr141087 16 38550173 to 38550235 62 - TSS region transcription start site region 141087
Tssr138394 16 38555744 to 38555759 15 + TSS region transcription start site region 138394
Tssr138395 16 38558664 to 38558684 20 + TSS region transcription start site region 138395
Tssr138396 16 38558690 to 38558737 47 + TSS region transcription start site region 138396
Tmem39a 16 38558698 to 38592162 33464 + protein coding gene transmembrane protein 39a
Cpgi8265 16 38562644 to 38563333 689 CpG island CpG island 8265
Tssr141088 16 38562714 to 38562753 39 - TSS region transcription start site region 141088
Tssr138397 16 38562806 to 38562819 13 + TSS region transcription start site region 138397
Tssr138398 16 38562821 to 38562861 40 + TSS region transcription start site region 138398
Tssr138399 16 38562870 to 38562875 5 + TSS region transcription start site region 138399
Tssr138400 16 38562876 to 38562886 10 + TSS region transcription start site region 138400
Tssr138401 16 38562902 to 38562913 11 + TSS region transcription start site region 138401
Tssr138402 16 38564219 to 38564257 38 + TSS region transcription start site region 138402
Gm17103 16 38569323 to 38573300 3977 - antisense lncRNA gene predicted gene 17103
Tssr138403 16 38585358 to 38585375 17 + TSS region transcription start site region 138403
Tssr138404 16 38585380 to 38585391 11 + TSS region transcription start site region 138404
Arhgap31 16 38598343 to 38713035 114692 - protein coding gene Rho GTPase activating protein 31
Tssr141089 16 38600049 to 38600061 12 - TSS region transcription start site region 141089
Tssr141090 16 38602656 to 38602698 42 - TSS region transcription start site region 141090
Cpgi8266 16 38608971 to 38609311 340 CpG island CpG island 8266
D16Ium68 16 38612538 to 38612708 170 DNA segment DNA segment, Chr 16, Indiana University Medical 68
Gm36482 16 38614651 to 38653040 38389 + lncRNA gene predicted gene, 36482
Tssr141091 16 38622347 to 38622363 16 - TSS region transcription start site region 141091
Tssr141092 16 38622366 to 38622384 18 - TSS region transcription start site region 141092
Tssr141093 16 38636920 to 38636954 34 - TSS region transcription start site region 141093
Tssr138405 16 38651329 to 38651332 3 + TSS region transcription start site region 138405
Tssr138406 16 38661710 to 38661715 5 + TSS region transcription start site region 138406
Cpgi8267 16 38673578 to 38673772 194 CpG island CpG island 8267
Tssr141094 16 38678407 to 38678418 11 - TSS region transcription start site region 141094
Gm15530 16 38685315 to 38685869 554 - pseudogene predicted gene 15530
Tssr141095 16 38703684 to 38703693 9 - TSS region transcription start site region 141095
Tssr141096 16 38705820 to 38705824 4 - TSS region transcription start site region 141096
Tssr141097 16 38709708 to 38709718 10 - TSS region transcription start site region 141097
D16Mit90 16 38710883 to 38710979 96 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 90
Tssr138407 16 38712174 to 38712178 4 + TSS region transcription start site region 138407
Tssr138408 16 38712297 to 38712314 17 + TSS region transcription start site region 138408
Cpgi8268 16 38712337 to 38713623 1286 CpG island CpG island 8268
Tssr138409 16 38712451 to 38712454 3 + TSS region transcription start site region 138409
Tssr141098 16 38712734 to 38712745 11 - TSS region transcription start site region 141098
Tssr141099 16 38712828 to 38712839 11 - TSS region transcription start site region 141099
Tssr141100 16 38712842 to 38712860 18 - TSS region transcription start site region 141100
Tssr141101 16 38712862 to 38712903 41 - TSS region transcription start site region 141101
Tssr141102 16 38712924 to 38712937 13 - TSS region transcription start site region 141102
Tssr141103 16 38712947 to 38712978 31 - TSS region transcription start site region 141103
Tssr138410 16 38712958 to 38712962 4 + TSS region transcription start site region 138410
Tssr4875 16 38712995 to 38712997 2 - TSS region transcription start site region 4875
Tssr141104 16 38713005 to 38713016 11 - TSS region transcription start site region 141104
Tssr141105 16 38713068 to 38713083 15 - TSS region transcription start site region 141105
Tssr141106 16 38713207 to 38713218 11 - TSS region transcription start site region 141106
Tssr141107 16 38713235 to 38713304 69 - TSS region transcription start site region 141107
Tssr141108 16 38713323 to 38713342 19 - TSS region transcription start site region 141108
Tssr141109 16 38713354 to 38713363 9 - TSS region transcription start site region 141109
Tssr141110 16 38713391 to 38713407 16 - TSS region transcription start site region 141110
Tssr141111 16 38713428 to 38713439 11 - TSS region transcription start site region 141111
Tssr141112 16 38713461 to 38713492 31 - TSS region transcription start site region 141112
Cpgi8269 16 38742045 to 38742907 862 CpG island CpG island 8269
Tssr138411 16 38742254 to 38742279 25 + TSS region transcription start site region 138411
B4galt4 16 38742264 to 38769049 26785 + protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
Tssr138412 16 38742280 to 38742307 27 + TSS region transcription start site region 138412
Gm15575 16 38748729 to 38750309 1580 - pseudogene predicted gene 15575
Tssr138413 16 38761701 to 38761707 6 + TSS region transcription start site region 138413
Upk1b 16 38773182 to 38800203 27021 - protein coding gene uroplakin 1B
Tssr141113 16 38781169 to 38781180 11 - TSS region transcription start site region 141113
Tssr141114 16 38783513 to 38783525 12 - TSS region transcription start site region 141114
Tssr141115 16 38783602 to 38783613 11 - TSS region transcription start site region 141115
Tssr141116 16 38783720 to 38783736 16 - TSS region transcription start site region 141116
Tssr141117 16 38783860 to 38783866 6 - TSS region transcription start site region 141117
Tssr138414 16 38784218 to 38784243 25 + TSS region transcription start site region 138414
Tssr141118 16 38784262 to 38784283 21 - TSS region transcription start site region 141118
Tssr141119 16 38800193 to 38800209 16 - TSS region transcription start site region 141119
Tssr141120 16 38800217 to 38800228 11 - TSS region transcription start site region 141120
Tssr141121 16 38800235 to 38800246 11 - TSS region transcription start site region 141121
Tssr141122 16 38800277 to 38800286 9 - TSS region transcription start site region 141122
Tssr141123 16 38800326 to 38800337 11 - TSS region transcription start site region 141123
Tssr141124 16 38800343 to 38800358 15 - TSS region transcription start site region 141124
Tex55 16 38812206 to 38828749 16543 - protein coding gene testis expressed 55
Gm15803 16 38813990 to 38814383 393 + pseudogene predicted gene 15803
Tssr141125 16 38828725 to 38828736 11 - TSS region transcription start site region 141125
Tssr141126 16 38828745 to 38828754 9 - TSS region transcription start site region 141126
Tssr141127 16 38828756 to 38828770 14 - TSS region transcription start site region 141127
Tssr141128 16 38828780 to 38828783 3 - TSS region transcription start site region 141128
Gm15802 16 38828864 to 38875713 46849 + antisense lncRNA gene predicted gene 15802
Tssr138415 16 38828899 to 38828908 9 + TSS region transcription start site region 138415
Tssr138416 16 38828911 to 38828920 9 + TSS region transcription start site region 138416
Tssr138417 16 38892502 to 38892534 32 + TSS region transcription start site region 138417
Igsf11 16 38892671 to 39027159 134488 + protein coding gene immunoglobulin superfamily, member 11
Tssr138418 16 38901240 to 38901289 49 + TSS region transcription start site region 138418
Cpgi8270 16 38902094 to 38902825 731 CpG island CpG island 8270
Tssr138419 16 38902253 to 38902297 44 + TSS region transcription start site region 138419
Tssr138420 16 38902305 to 38902316 11 + TSS region transcription start site region 138420
Tssr138421 16 38902325 to 38902364 39 + TSS region transcription start site region 138421
Tssr138422 16 38902372 to 38902437 65 + TSS region transcription start site region 138422
Tssr138423 16 38902438 to 38902462 24 + TSS region transcription start site region 138423
Tssr138424 16 38910110 to 38910115 5 + TSS region transcription start site region 138424
Gm22500 16 38927209 to 38927307 98 + snRNA gene predicted gene, 22500
Tssr138425 16 38931890 to 38931895 5 + TSS region transcription start site region 138425
Gm34258 16 38987086 to 39000126 13040 + pseudogene predicted gene, 34258
Tssr138426 16 39025789 to 39025804 15 + TSS region transcription start site region 138426
Tssr138427 16 39026188 to 39026195 7 + TSS region transcription start site region 138427
Tssr138428 16 39026743 to 39026747 4 + TSS region transcription start site region 138428
D16Dcr5 16 39106775 to 39106870 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 5
Gm36585 16 39115990 to 39121079 5089 + lncRNA gene predicted gene, 36585
D16Mit13 16 39118018 to 39118162 144 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 13
D16Mit12 16 39118021 to 39118212 191 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12
Bmd15 16 39118021 to 39118212 191 QTL bone mineral density 15
D16Mit12.2 16 39118161 to 39118277 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 12.2
Tssr138429 16 39119488 to 39119491 3 + TSS region transcription start site region 138429
Gm36742 16 39187463 to 39188906 1443 - lincRNA gene predicted gene, 36742
Gm36852 16 39276875 to 39278576 1701 - lncRNA gene predicted gene, 36852
Gm41454 16 39363932 to 39391440 27508 + lncRNA gene predicted gene, 41454
Gm29855 16 39401834 to 39453569 51735 - lncRNA gene predicted gene, 29855
Gm36903 16 39446749 to 39488234 41485 + lincRNA gene predicted gene, 36903
Gm24795 16 39455015 to 39455135 120 + miRNA gene predicted gene, 24795
D16Mit135 16 39619313 to 39619462 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 135