Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38276813-38406859

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr1i2 16 38248323 to 38294824 46501 - protein coding gene nuclear receptor subfamily 1, group I, member 2
Tssr141058 16 38294774 to 38294838 64 - TSS region transcription start site region 141058
Tssr141059 16 38294843 to 38294854 11 - TSS region transcription start site region 141059
Maats1 16 38297754 to 38341860 44106 - protein coding gene MYCBP-associated, testis expressed 1
Maats1os 16 38302616 to 38305020 2404 + antisense lncRNA gene MYCBP-associated, testis expressed 1, opposite strand
Cpgi8254 16 38304806 to 38304962 156 CpG island CpG island 8254
Cpgi8255 16 38306645 to 38306963 318 CpG island CpG island 8255
Cpgi8256 16 38341454 to 38341938 484 CpG island CpG island 8256
Tssr141060 16 38341813 to 38341859 46 - TSS region transcription start site region 141060
Tssr141061 16 38341864 to 38341871 7 - TSS region transcription start site region 141061
Cpgi8257 16 38346821 to 38347378 557 CpG island CpG island 8257
Tssr138373 16 38346986 to 38347050 64 + TSS region transcription start site region 138373
Cox17 16 38346991 to 38352763 5772 + protein coding gene cytochrome c oxidase assembly protein 17, copper chaperone
Gm21987 16 38347040 to 38362297 15257 + protein coding gene predicted gene 21987
Tssr138374 16 38347073 to 38347084 11 + TSS region transcription start site region 138374
Tssr138375 16 38347255 to 38347260 5 + TSS region transcription start site region 138375
Tssr138376 16 38353098 to 38353139 41 + TSS region transcription start site region 138376
Tssr138377 16 38362164 to 38362178 14 + TSS region transcription start site region 138377
Tssr138378 16 38362179 to 38362196 17 + TSS region transcription start site region 138378
Tssr138379 16 38362205 to 38362230 25 + TSS region transcription start site region 138379
Popdc2 16 38362209 to 38378216 16007 + protein coding gene popeye domain containing 2
Tssr138380 16 38362234 to 38362251 17 + TSS region transcription start site region 138380
Tssr138381 16 38371973 to 38372006 33 + TSS region transcription start site region 138381
Cpgi8258 16 38373814 to 38374362 548 CpG island CpG island 8258
Tssr141062 16 38376847 to 38376853 6 - TSS region transcription start site region 141062
Tssr141063 16 38394297 to 38394332 35 - TSS region transcription start site region 141063
Tssr141064 16 38396048 to 38396055 7 - TSS region transcription start site region 141064
Pla1a 16 38396117 to 38433145 37028 - protein coding gene phospholipase A1 member A
Tssr141065 16 38396201 to 38396222 21 - TSS region transcription start site region 141065
Tssr4871 16 38396386 to 38396428 42 + TSS region transcription start site region 4871
Tssr4872 16 38396515 to 38396524 9 + TSS region transcription start site region 4872
Tssr4873 16 38399620 to 38399628 8 - TSS region transcription start site region 4873
Tssr141066 16 38400074 to 38400089 15 - TSS region transcription start site region 141066
Tssr4874 16 38403964 to 38403978 14 + TSS region transcription start site region 4874
Tssr141067 16 38406810 to 38406830 20 - TSS region transcription start site region 141067