Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:37018171-39948185

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330 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Polq 16 37011786 to 37095417 83631 + protein coding gene polymerase (DNA directed), theta
Tssr138306 16 37037875 to 37037889 14 + TSS region transcription start site region 138306
Tssr141037 16 37112568 to 37112583 15 - TSS region transcription start site region 141037
Stxbp5l 16 37114942 to 37384962 270020 - protein coding gene syntaxin binding protein 5-like
D16Mit226 16 37160319 to 37160426 107 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-226
Gm15665 16 37212916 to 37213735 819 - pseudogene predicted gene 15665
Gm49567 16 37352752 to 37352991 239 + pseudogene predicted gene, 49567
Cpgi8246 16 37384291 to 37385283 992 CpG island CpG island 8246
Tssr138307 16 37384495 to 37384500 5 + TSS region transcription start site region 138307
Tssr141038 16 37384915 to 37384931 16 - TSS region transcription start site region 141038
Tssr141039 16 37384940 to 37384978 38 - TSS region transcription start site region 141039
Gtf2e1 16 37509795 to 37539773 29978 - protein coding gene general transcription factor II E, polypeptide 1 (alpha subunit)
Cpgi8247 16 37539305 to 37540182 877 CpG island CpG island 8247
Tssr141040 16 37539693 to 37539710 17 - TSS region transcription start site region 141040
Tssr141041 16 37539727 to 37539730 3 - TSS region transcription start site region 141041
Tssr141042 16 37539737 to 37539751 14 - TSS region transcription start site region 141042
Tssr141043 16 37539752 to 37539780 28 - TSS region transcription start site region 141043
Tssr141044 16 37539781 to 37539796 15 - TSS region transcription start site region 141044
Tssr138308 16 37539883 to 37539918 35 + TSS region transcription start site region 138308
Rabl3 16 37539885 to 37572385 32500 + protein coding gene RAB, member RAS oncogene family-like 3
Gm49569 16 37549169 to 37549449 280 + unclassified gene predicted gene, 49569
Tssr138309 16 37580137 to 37580151 14 + TSS region transcription start site region 138309
Hgd 16 37580153 to 37632020 51867 + protein coding gene homogentisate 1, 2-dioxygenase
Tssr138310 16 37580212 to 37580224 12 + TSS region transcription start site region 138310
Tssr138311 16 37580228 to 37580258 30 + TSS region transcription start site region 138311
Tssr138312 16 37580274 to 37580289 15 + TSS region transcription start site region 138312
Gm46559 16 37591927 to 37596190 4263 - antisense lncRNA gene predicted gene, 46559
Tssr138313 16 37592081 to 37592085 4 + TSS region transcription start site region 138313
Tssr138314 16 37616790 to 37616801 11 + TSS region transcription start site region 138314
Tssr141045 16 37621909 to 37621936 27 - TSS region transcription start site region 141045
Tssr141046 16 37621938 to 37621947 9 - TSS region transcription start site region 141046
Tssr138315 16 37624345 to 37624351 6 + TSS region transcription start site region 138315
Ndufb4 16 37647602 to 37654368 6766 - protein coding gene NADH:ubiquinone oxidoreductase subunit B4
Cpgi8248 16 37653854 to 37654691 837 CpG island CpG island 8248
Tssr141047 16 37654393 to 37654406 13 - TSS region transcription start site region 141047
Tssr141048 16 37654408 to 37654450 42 - TSS region transcription start site region 141048
Gm35833 16 37680756 to 37685298 4542 + lncRNA gene predicted gene, 35833
Gm4600 16 37696770 to 37697340 570 - pseudogene predicted gene 4600
Tssr141049 16 37697368 to 37697369 1 - TSS region transcription start site region 141049
Gm46547 16 37714971 to 37715493 522 - lncRNA gene predicted gene, 46547
Cpgi8249 16 37776638 to 37777494 856 CpG island CpG island 8249
Tssr138316 16 37777045 to 37777065 20 + TSS region transcription start site region 138316
Fstl1 16 37777055 to 37836516 59461 + protein coding gene follistatin-like 1
Tssr138317 16 37777068 to 37777079 11 + TSS region transcription start site region 138317
Tssr138318 16 37777092 to 37777106 14 + TSS region transcription start site region 138318
Gm41452 16 37824341 to 37849601 25260 - lncRNA gene predicted gene, 41452
Tssr138319 16 37829124 to 37829136 12 + TSS region transcription start site region 138319
Tssr138320 16 37831567 to 37831582 15 + TSS region transcription start site region 138320
Tssr141050 16 37833912 to 37833945 33 - TSS region transcription start site region 141050
Tssr138321 16 37834471 to 37834521 50 + TSS region transcription start site region 138321
Tssr138322 16 37834554 to 37834571 17 + TSS region transcription start site region 138322
Tssr138323 16 37834596 to 37834607 11 + TSS region transcription start site region 138323
Tssr138324 16 37835447 to 37835460 13 + TSS region transcription start site region 138324
Tssr141051 16 37835741 to 37835746 5 - TSS region transcription start site region 141051
Tssr141052 16 37835797 to 37835821 24 - TSS region transcription start site region 141052
Tssr4870 16 37836463 to 37836473 10 + TSS region transcription start site region 4870
Tssr141053 16 37843529 to 37843550 21 - TSS region transcription start site region 141053
Gm36028 16 37850913 to 37861146 10233 - protein coding gene predicted gene, 36028
n-R5s34 16 37854782 to 37854897 115 + rRNA gene nuclear encoded rRNA 5S 34
Tssr141054 16 37856426 to 37856429 3 - TSS region transcription start site region 141054
Tssr141055 16 37861175 to 37861191 16 - TSS region transcription start site region 141055
Cpgi8250 16 37867759 to 37869488 1729 CpG island CpG island 8250
Tssr138325 16 37868119 to 37868170 51 + TSS region transcription start site region 138325
Tssr138326 16 37868184 to 37868203 19 + TSS region transcription start site region 138326
Tssr138327 16 37868337 to 37868375 38 + TSS region transcription start site region 138327
Tssr138328 16 37868383 to 37868481 98 + TSS region transcription start site region 138328
Lrrc58 16 37868400 to 37888857 20457 + protein coding gene leucine rich repeat containing 58
Tssr138329 16 37868488 to 37868497 9 + TSS region transcription start site region 138329
Tssr138330 16 37868565 to 37868733 168 + TSS region transcription start site region 138330
Tssr138331 16 37868735 to 37868763 28 + TSS region transcription start site region 138331
Tssr138332 16 37868819 to 37868845 26 + TSS region transcription start site region 138332
Tssr138333 16 37878363 to 37878375 12 + TSS region transcription start site region 138333
Tssr138334 16 37881301 to 37881326 25 + TSS region transcription start site region 138334
Tssr138335 16 37881345 to 37881361 16 + TSS region transcription start site region 138335
Tssr138336 16 37882504 to 37882533 29 + TSS region transcription start site region 138336
Gm15725 16 37882542 to 37883631 1089 + pseudogene predicted gene 15725
Tssr138337 16 37882595 to 37882647 52 + TSS region transcription start site region 138337
Tssr138338 16 37882854 to 37882871 17 + TSS region transcription start site region 138338
Tssr138339 16 37883011 to 37883014 3 + TSS region transcription start site region 138339
Tssr138340 16 37883094 to 37883119 25 + TSS region transcription start site region 138340
Tssr138341 16 37883331 to 37883346 15 + TSS region transcription start site region 138341
Tssr138342 16 37883378 to 37883392 14 + TSS region transcription start site region 138342
Tssr138343 16 37883450 to 37883492 42 + TSS region transcription start site region 138343
Tssr138344 16 37883599 to 37883628 29 + TSS region transcription start site region 138344
Tssr138345 16 37883630 to 37883641 11 + TSS region transcription start site region 138345
Tssr138346 16 37883734 to 37883761 27 + TSS region transcription start site region 138346
Tssr138347 16 37883871 to 37883902 31 + TSS region transcription start site region 138347
Tssr138348 16 37884063 to 37884078 15 + TSS region transcription start site region 138348
Tssr138349 16 37884461 to 37884479 18 + TSS region transcription start site region 138349
Cpgi8251 16 37916154 to 37917054 900 CpG island CpG island 8251
Tssr138350 16 37916440 to 37916474 34 + TSS region transcription start site region 138350
Gpr156 16 37916496 to 38007530 91034 + protein coding gene G protein-coupled receptor 156
Tssr141056 16 37956780 to 37956783 3 - TSS region transcription start site region 141056
Tssr138351 16 37963379 to 37963387 8 + TSS region transcription start site region 138351
Gm36225 16 37968078 to 37988510 20432 - lncRNA gene predicted gene, 36225
Gm25140 16 37980087 to 37980226 139 + snRNA gene predicted gene, 25140
4930542C21Rik 16 38017323 to 38054526 37203 + lncRNA gene RIKEN cDNA 4930542C21 gene
Gm46549 16 38037651 to 38081936 44285 - lncRNA gene predicted gene, 46549
BC031361 16 38085064 to 38089260 4196 - lncRNA gene cDNA sequence BC031361
Cpgi8252 16 38088080 to 38090161 2081 CpG island CpG island 8252
Tssr141057 16 38088671 to 38088705 34 - TSS region transcription start site region 141057
Gsk3b 16 38089001 to 38246080 157079 + protein coding gene glycogen synthase kinase 3 beta
Tssr138352 16 38089041 to 38089064 23 + TSS region transcription start site region 138352
Tssr138353 16 38089071 to 38089103 32 + TSS region transcription start site region 138353
Tssr138354 16 38089114 to 38089128 14 + TSS region transcription start site region 138354
Tssr138355 16 38089325 to 38089355 30 + TSS region transcription start site region 138355
Tssr138356 16 38089361 to 38089395 34 + TSS region transcription start site region 138356
Tssr138357 16 38089481 to 38089536 55 + TSS region transcription start site region 138357
Tssr138358 16 38089792 to 38089808 16 + TSS region transcription start site region 138358
Tssr138359 16 38089961 to 38089982 21 + TSS region transcription start site region 138359
Tssr138360 16 38104532 to 38104537 5 + TSS region transcription start site region 138360
Tssr138361 16 38109734 to 38109738 4 + TSS region transcription start site region 138361
Tssr138362 16 38128540 to 38128548 8 + TSS region transcription start site region 138362
Tssr138363 16 38131999 to 38132036 37 + TSS region transcription start site region 138363
Tssr138364 16 38132050 to 38132061 11 + TSS region transcription start site region 138364
Tssr138365 16 38143296 to 38143312 16 + TSS region transcription start site region 138365
Tssr138366 16 38143313 to 38143358 45 + TSS region transcription start site region 138366
Gm25617 16 38158008 to 38158139 131 + snoRNA gene predicted gene, 25617
Tssr138367 16 38177704 to 38177708 4 + TSS region transcription start site region 138367
Gm27931 16 38207463 to 38207591 128 - snoRNA gene predicted gene, 27931
Tssr138368 16 38220116 to 38220127 11 + TSS region transcription start site region 138368
Tssr138369 16 38240822 to 38240840 18 + TSS region transcription start site region 138369
Tssr138370 16 38244391 to 38244407 16 + TSS region transcription start site region 138370
Tssr138371 16 38244946 to 38244956 10 + TSS region transcription start site region 138371
Tssr138372 16 38244996 to 38245011 15 + TSS region transcription start site region 138372
Nr1i2 16 38248323 to 38294824 46501 - protein coding gene nuclear receptor subfamily 1, group I, member 2
Cpgi8253 16 38253794 to 38254370 576 CpG island CpG island 8253
Tssr141058 16 38294774 to 38294838 64 - TSS region transcription start site region 141058
Tssr141059 16 38294843 to 38294854 11 - TSS region transcription start site region 141059
Maats1 16 38297754 to 38341860 44106 - protein coding gene MYCBP-associated, testis expressed 1
Maats1os 16 38302616 to 38305020 2404 + antisense lncRNA gene MYCBP-associated, testis expressed 1, opposite strand
Cpgi8254 16 38304806 to 38304962 156 CpG island CpG island 8254
Cpgi8255 16 38306645 to 38306963 318 CpG island CpG island 8255
Cpgi8256 16 38341454 to 38341938 484 CpG island CpG island 8256
Tssr141060 16 38341813 to 38341859 46 - TSS region transcription start site region 141060
Tssr141061 16 38341864 to 38341871 7 - TSS region transcription start site region 141061
Cpgi8257 16 38346821 to 38347378 557 CpG island CpG island 8257
Tssr138373 16 38346986 to 38347050 64 + TSS region transcription start site region 138373
Cox17 16 38346991 to 38352763 5772 + protein coding gene cytochrome c oxidase assembly protein 17, copper chaperone
Gm21987 16 38347040 to 38362297 15257 + protein coding gene predicted gene 21987
Tssr138374 16 38347073 to 38347084 11 + TSS region transcription start site region 138374
Tssr138375 16 38347255 to 38347260 5 + TSS region transcription start site region 138375
Tssr138376 16 38353098 to 38353139 41 + TSS region transcription start site region 138376
Tssr138377 16 38362164 to 38362178 14 + TSS region transcription start site region 138377
Tssr138378 16 38362179 to 38362196 17 + TSS region transcription start site region 138378
Tssr138379 16 38362205 to 38362230 25 + TSS region transcription start site region 138379
Popdc2 16 38362209 to 38378216 16007 + protein coding gene popeye domain containing 2
Tssr138380 16 38362234 to 38362251 17 + TSS region transcription start site region 138380
Tssr138381 16 38371973 to 38372006 33 + TSS region transcription start site region 138381
Cpgi8258 16 38373814 to 38374362 548 CpG island CpG island 8258
Tssr141062 16 38376847 to 38376853 6 - TSS region transcription start site region 141062
Tssr141063 16 38394297 to 38394332 35 - TSS region transcription start site region 141063
Tssr141064 16 38396048 to 38396055 7 - TSS region transcription start site region 141064
Pla1a 16 38396117 to 38433145 37028 - protein coding gene phospholipase A1 member A
Tssr141065 16 38396201 to 38396222 21 - TSS region transcription start site region 141065
Tssr4871 16 38396386 to 38396428 42 + TSS region transcription start site region 4871
Tssr4872 16 38396515 to 38396524 9 + TSS region transcription start site region 4872
Tssr4873 16 38399620 to 38399628 8 - TSS region transcription start site region 4873
Tssr141066 16 38400074 to 38400089 15 - TSS region transcription start site region 141066
Tssr4874 16 38403964 to 38403978 14 + TSS region transcription start site region 4874
Tssr141067 16 38406810 to 38406830 20 - TSS region transcription start site region 141067
Tssr141068 16 38407678 to 38407696 18 - TSS region transcription start site region 141068
Tssr141069 16 38407703 to 38407738 35 - TSS region transcription start site region 141069
Tssr141070 16 38432879 to 38432919 40 - TSS region transcription start site region 141070
Tssr141071 16 38433153 to 38433175 22 - TSS region transcription start site region 141071
Gm36333 16 38433289 to 38440683 7394 + lncRNA gene predicted gene, 36333
D16Mit59 16 38433890 to 38434074 184 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 59
Tssr138382 16 38443399 to 38443450 51 + TSS region transcription start site region 138382
Tssr141072 16 38443922 to 38443929 7 - TSS region transcription start site region 141072
Tssr138383 16 38444278 to 38444304 26 + TSS region transcription start site region 138383
Tssr138384 16 38444305 to 38444319 14 + TSS region transcription start site region 138384
D16Mit1003 16 38444629 to 38444730 101 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1003
Tssr138385 16 38445346 to 38445355 9 + TSS region transcription start site region 138385
Adprh 16 38445399 to 38452689 7290 - protein coding gene ADP-ribosylarginine hydrolase
Tssr141073 16 38445940 to 38445969 29 - TSS region transcription start site region 141073
Tssr141074 16 38447446 to 38447490 44 - TSS region transcription start site region 141074
Tssr141075 16 38447520 to 38447568 48 - TSS region transcription start site region 141075
Tssr141076 16 38447572 to 38447600 28 - TSS region transcription start site region 141076
Tssr141077 16 38447602 to 38447630 28 - TSS region transcription start site region 141077
Tssr141078 16 38447670 to 38447681 11 - TSS region transcription start site region 141078
Tssr141079 16 38448429 to 38448436 7 - TSS region transcription start site region 141079
D930030I03Rik 16 38451982 to 38453494 1512 + antisense lncRNA gene RIKEN cDNA D930030I03 gene
Cpgi8259 16 38452344 to 38453269 925 CpG island CpG island 8259
Tssr141080 16 38452612 to 38452675 63 - TSS region transcription start site region 141080
Tssr141081 16 38452683 to 38452704 21 - TSS region transcription start site region 141081
Tssr138386 16 38452796 to 38452831 35 + TSS region transcription start site region 138386
Tssr138387 16 38452884 to 38452911 27 + TSS region transcription start site region 138387
Tssr138388 16 38457425 to 38457471 46 + TSS region transcription start site region 138388
Cd80 16 38457431 to 38495958 38527 + protein coding gene CD80 antigen
Tssr141082 16 38458671 to 38458684 13 - TSS region transcription start site region 141082
Tssr138389 16 38458797 to 38458825 28 + TSS region transcription start site region 138389
Tssr138390 16 38458887 to 38458911 24 + TSS region transcription start site region 138390
Tssr138391 16 38458927 to 38458980 53 + TSS region transcription start site region 138391
Gm8590 16 38476490 to 38477721 1231 + pseudogene predicted gene 8590
Cpgi8260 16 38476493 to 38476777 284 CpG island CpG island 8260
Gm41453 16 38479749 to 38482631 2882 - lncRNA gene predicted gene, 41453
Cpgi8261 16 38483136 to 38483810 674 CpG island CpG island 8261
Tssr138392 16 38483171 to 38483185 14 + TSS region transcription start site region 138392
Ck-ps3 16 38483182 to 38484596 1414 + pseudogene creatine kinase pseudogene 3
Cpgi8262 16 38484108 to 38484511 403 CpG island CpG island 8262