Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:36949693-38129710

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcls1 16 36934983 to 36963212 28229 + protein coding gene hematopoietic cell specific Lyn substrate 1
Tssr138294 16 36951136 to 36951154 18 + TSS region transcription start site region 138294
Tssr138295 16 36951183 to 36951194 11 + TSS region transcription start site region 138295
Tssr138296 16 36952527 to 36952541 14 + TSS region transcription start site region 138296
Tssr138297 16 36954681 to 36954704 23 + TSS region transcription start site region 138297
Tssr138298 16 36955267 to 36955317 50 + TSS region transcription start site region 138298
Tssr138299 16 36955321 to 36955332 11 + TSS region transcription start site region 138299
Tssr138300 16 36955975 to 36955977 2 + TSS region transcription start site region 138300
Tssr141028 16 36957318 to 36957336 18 - TSS region transcription start site region 141028
Tssr141029 16 36957338 to 36957362 24 - TSS region transcription start site region 141029
Tssr138301 16 36962012 to 36962024 12 + TSS region transcription start site region 138301
Tssr138302 16 36962141 to 36962154 13 + TSS region transcription start site region 138302
Tssr138303 16 36962684 to 36962712 28 + TSS region transcription start site region 138303
Fbxo40 16 36963460 to 36990467 27007 - protein coding gene F-box protein 40
Tssr141030 16 36990145 to 36990150 5 - TSS region transcription start site region 141030
Tssr141031 16 36990162 to 36990173 11 - TSS region transcription start site region 141031
Tssr141032 16 36990175 to 36990185 10 - TSS region transcription start site region 141032
Tssr141033 16 36990207 to 36990264 57 - TSS region transcription start site region 141033
Tssr141034 16 36990272 to 36990283 11 - TSS region transcription start site region 141034
Tssr141035 16 36990449 to 36990467 18 - TSS region transcription start site region 141035
Tssr141036 16 36990509 to 36990540 31 - TSS region transcription start site region 141036
Gm49605 16 36996627 to 36997041 414 + pseudogene predicted gene, 49605
Tssr138304 16 37011294 to 37011297 3 + TSS region transcription start site region 138304
Cpgi8245 16 37011611 to 37012201 590 CpG island CpG island 8245
Tssr138305 16 37011758 to 37011791 33 + TSS region transcription start site region 138305
Polq 16 37011786 to 37095417 83631 + protein coding gene polymerase (DNA directed), theta
Tssr138306 16 37037875 to 37037889 14 + TSS region transcription start site region 138306
Tssr141037 16 37112568 to 37112583 15 - TSS region transcription start site region 141037
Stxbp5l 16 37114942 to 37384962 270020 - protein coding gene syntaxin binding protein 5-like
D16Mit226 16 37160319 to 37160426 107 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-226
Gm15665 16 37212916 to 37213735 819 - pseudogene predicted gene 15665
Gm49567 16 37352752 to 37352991 239 + pseudogene predicted gene, 49567
Cpgi8246 16 37384291 to 37385283 992 CpG island CpG island 8246
Tssr138307 16 37384495 to 37384500 5 + TSS region transcription start site region 138307
Tssr141038 16 37384915 to 37384931 16 - TSS region transcription start site region 141038
Tssr141039 16 37384940 to 37384978 38 - TSS region transcription start site region 141039
Gtf2e1 16 37509795 to 37539773 29978 - protein coding gene general transcription factor II E, polypeptide 1 (alpha subunit)
Cpgi8247 16 37539305 to 37540182 877 CpG island CpG island 8247
Tssr141040 16 37539693 to 37539710 17 - TSS region transcription start site region 141040
Tssr141041 16 37539727 to 37539730 3 - TSS region transcription start site region 141041
Tssr141042 16 37539737 to 37539751 14 - TSS region transcription start site region 141042
Tssr141043 16 37539752 to 37539780 28 - TSS region transcription start site region 141043
Tssr141044 16 37539781 to 37539796 15 - TSS region transcription start site region 141044
Tssr138308 16 37539883 to 37539918 35 + TSS region transcription start site region 138308
Rabl3 16 37539885 to 37572385 32500 + protein coding gene RAB, member RAS oncogene family-like 3
Gm49569 16 37549169 to 37549449 280 + unclassified gene predicted gene, 49569
Tssr138309 16 37580137 to 37580151 14 + TSS region transcription start site region 138309
Hgd 16 37580153 to 37632020 51867 + protein coding gene homogentisate 1, 2-dioxygenase
Tssr138310 16 37580212 to 37580224 12 + TSS region transcription start site region 138310
Tssr138311 16 37580228 to 37580258 30 + TSS region transcription start site region 138311
Tssr138312 16 37580274 to 37580289 15 + TSS region transcription start site region 138312
Gm46559 16 37591927 to 37596190 4263 - antisense lncRNA gene predicted gene, 46559
Tssr138313 16 37592081 to 37592085 4 + TSS region transcription start site region 138313
Tssr138314 16 37616790 to 37616801 11 + TSS region transcription start site region 138314
Tssr141045 16 37621909 to 37621936 27 - TSS region transcription start site region 141045
Tssr141046 16 37621938 to 37621947 9 - TSS region transcription start site region 141046
Tssr138315 16 37624345 to 37624351 6 + TSS region transcription start site region 138315
Ndufb4 16 37647602 to 37654368 6766 - protein coding gene NADH:ubiquinone oxidoreductase subunit B4
Cpgi8248 16 37653854 to 37654691 837 CpG island CpG island 8248
Tssr141047 16 37654393 to 37654406 13 - TSS region transcription start site region 141047
Tssr141048 16 37654408 to 37654450 42 - TSS region transcription start site region 141048
Gm35833 16 37680756 to 37685298 4542 + lncRNA gene predicted gene, 35833
Gm4600 16 37696770 to 37697340 570 - pseudogene predicted gene 4600
Tssr141049 16 37697368 to 37697369 1 - TSS region transcription start site region 141049
Gm46547 16 37714971 to 37715493 522 - lncRNA gene predicted gene, 46547
Cpgi8249 16 37776638 to 37777494 856 CpG island CpG island 8249
Tssr138316 16 37777045 to 37777065 20 + TSS region transcription start site region 138316
Fstl1 16 37777055 to 37836516 59461 + protein coding gene follistatin-like 1
Tssr138317 16 37777068 to 37777079 11 + TSS region transcription start site region 138317
Tssr138318 16 37777092 to 37777106 14 + TSS region transcription start site region 138318
Gm41452 16 37824341 to 37849601 25260 - lncRNA gene predicted gene, 41452
Tssr138319 16 37829124 to 37829136 12 + TSS region transcription start site region 138319
Tssr138320 16 37831567 to 37831582 15 + TSS region transcription start site region 138320
Tssr141050 16 37833912 to 37833945 33 - TSS region transcription start site region 141050
Tssr138321 16 37834471 to 37834521 50 + TSS region transcription start site region 138321
Tssr138322 16 37834554 to 37834571 17 + TSS region transcription start site region 138322
Tssr138323 16 37834596 to 37834607 11 + TSS region transcription start site region 138323
Tssr138324 16 37835447 to 37835460 13 + TSS region transcription start site region 138324
Tssr141051 16 37835741 to 37835746 5 - TSS region transcription start site region 141051
Tssr141052 16 37835797 to 37835821 24 - TSS region transcription start site region 141052
Tssr4870 16 37836463 to 37836473 10 + TSS region transcription start site region 4870
Tssr141053 16 37843529 to 37843550 21 - TSS region transcription start site region 141053
Gm36028 16 37850913 to 37861146 10233 - protein coding gene predicted gene, 36028
n-R5s34 16 37854782 to 37854897 115 + rRNA gene nuclear encoded rRNA 5S 34
Tssr141054 16 37856426 to 37856429 3 - TSS region transcription start site region 141054
Tssr141055 16 37861175 to 37861191 16 - TSS region transcription start site region 141055
Cpgi8250 16 37867759 to 37869488 1729 CpG island CpG island 8250
Tssr138325 16 37868119 to 37868170 51 + TSS region transcription start site region 138325
Tssr138326 16 37868184 to 37868203 19 + TSS region transcription start site region 138326
Tssr138327 16 37868337 to 37868375 38 + TSS region transcription start site region 138327
Tssr138328 16 37868383 to 37868481 98 + TSS region transcription start site region 138328
Lrrc58 16 37868400 to 37888857 20457 + protein coding gene leucine rich repeat containing 58
Tssr138329 16 37868488 to 37868497 9 + TSS region transcription start site region 138329
Tssr138330 16 37868565 to 37868733 168 + TSS region transcription start site region 138330
Tssr138331 16 37868735 to 37868763 28 + TSS region transcription start site region 138331
Tssr138332 16 37868819 to 37868845 26 + TSS region transcription start site region 138332
Tssr138333 16 37878363 to 37878375 12 + TSS region transcription start site region 138333
Tssr138334 16 37881301 to 37881326 25 + TSS region transcription start site region 138334
Tssr138335 16 37881345 to 37881361 16 + TSS region transcription start site region 138335
Tssr138336 16 37882504 to 37882533 29 + TSS region transcription start site region 138336
Gm15725 16 37882542 to 37883631 1089 + pseudogene predicted gene 15725
Tssr138337 16 37882595 to 37882647 52 + TSS region transcription start site region 138337
Tssr138338 16 37882854 to 37882871 17 + TSS region transcription start site region 138338
Tssr138339 16 37883011 to 37883014 3 + TSS region transcription start site region 138339
Tssr138340 16 37883094 to 37883119 25 + TSS region transcription start site region 138340
Tssr138341 16 37883331 to 37883346 15 + TSS region transcription start site region 138341
Tssr138342 16 37883378 to 37883392 14 + TSS region transcription start site region 138342
Tssr138343 16 37883450 to 37883492 42 + TSS region transcription start site region 138343
Tssr138344 16 37883599 to 37883628 29 + TSS region transcription start site region 138344
Tssr138345 16 37883630 to 37883641 11 + TSS region transcription start site region 138345
Tssr138346 16 37883734 to 37883761 27 + TSS region transcription start site region 138346
Tssr138347 16 37883871 to 37883902 31 + TSS region transcription start site region 138347
Tssr138348 16 37884063 to 37884078 15 + TSS region transcription start site region 138348
Tssr138349 16 37884461 to 37884479 18 + TSS region transcription start site region 138349
Cpgi8251 16 37916154 to 37917054 900 CpG island CpG island 8251
Tssr138350 16 37916440 to 37916474 34 + TSS region transcription start site region 138350
Gpr156 16 37916496 to 38007530 91034 + protein coding gene G protein-coupled receptor 156
Tssr141056 16 37956780 to 37956783 3 - TSS region transcription start site region 141056
Tssr138351 16 37963379 to 37963387 8 + TSS region transcription start site region 138351
Gm36225 16 37968078 to 37988510 20432 - lncRNA gene predicted gene, 36225
Gm25140 16 37980087 to 37980226 139 + snRNA gene predicted gene, 25140
4930542C21Rik 16 38017323 to 38054526 37203 + lncRNA gene RIKEN cDNA 4930542C21 gene
Gm46549 16 38037651 to 38081936 44285 - lncRNA gene predicted gene, 46549
BC031361 16 38085064 to 38089260 4196 - lncRNA gene cDNA sequence BC031361
Cpgi8252 16 38088080 to 38090161 2081 CpG island CpG island 8252
Tssr141057 16 38088671 to 38088705 34 - TSS region transcription start site region 141057
Gsk3b 16 38089001 to 38246080 157079 + protein coding gene glycogen synthase kinase 3 beta
Tssr138352 16 38089041 to 38089064 23 + TSS region transcription start site region 138352
Tssr138353 16 38089071 to 38089103 32 + TSS region transcription start site region 138353
Tssr138354 16 38089114 to 38089128 14 + TSS region transcription start site region 138354
Tssr138355 16 38089325 to 38089355 30 + TSS region transcription start site region 138355
Tssr138356 16 38089361 to 38089395 34 + TSS region transcription start site region 138356
Tssr138357 16 38089481 to 38089536 55 + TSS region transcription start site region 138357
Tssr138358 16 38089792 to 38089808 16 + TSS region transcription start site region 138358
Tssr138359 16 38089961 to 38089982 21 + TSS region transcription start site region 138359
Tssr138360 16 38104532 to 38104537 5 + TSS region transcription start site region 138360
Tssr138361 16 38109734 to 38109738 4 + TSS region transcription start site region 138361
Tssr138362 16 38128540 to 38128548 8 + TSS region transcription start site region 138362