Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:36709380-37189385

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ildr1 16 36693978 to 36726804 32826 + protein coding gene immunoglobulin-like domain containing receptor 1
Cpgi8241 16 36709424 to 36709724 300 CpG island CpG island 8241
Tssr138269 16 36709783 to 36709797 14 + TSS region transcription start site region 138269
Tssr138270 16 36712035 to 36712044 9 + TSS region transcription start site region 138270
Tssr138271 16 36717724 to 36717756 32 + TSS region transcription start site region 138271
Cpgi8242 16 36722111 to 36722636 525 CpG island CpG island 8242
Tssr138272 16 36722540 to 36722568 28 + TSS region transcription start site region 138272
Gm8538 16 36735587 to 36737110 1523 + pseudogene predicted gene 8538
Slc15a2 16 36750177 to 36784962 34785 - protein coding gene solute carrier family 15 (H+/peptide transporter), member 2
Tssr141014 16 36770095 to 36770098 3 - TSS region transcription start site region 141014
Tssr141015 16 36778761 to 36778765 4 - TSS region transcription start site region 141015
Gm8425 16 36778834 to 36779602 768 + pseudogene predicted gene 8425
Tssr141016 16 36784699 to 36784728 29 - TSS region transcription start site region 141016
Tssr141017 16 36784746 to 36784758 12 - TSS region transcription start site region 141017
Tssr141018 16 36784784 to 36784825 41 - TSS region transcription start site region 141018
Tssr141019 16 36784826 to 36784848 22 - TSS region transcription start site region 141019
Tssr138273 16 36784892 to 36784923 31 + TSS region transcription start site region 138273
Tssr141020 16 36784932 to 36784971 39 - TSS region transcription start site region 141020
Tssr141021 16 36784974 to 36785001 27 - TSS region transcription start site region 141021
Gm22617 16 36789738 to 36789807 69 + miRNA gene predicted gene, 22617
Eaf2 16 36792884 to 36874826 81942 - protein coding gene ELL associated factor 2
Cpgi8243 16 36827794 to 36828778 984 CpG island CpG island 8243
Tssr141022 16 36828224 to 36828269 45 - TSS region transcription start site region 141022
Tssr138274 16 36828364 to 36828434 70 + TSS region transcription start site region 138274
Iqcb1 16 36828385 to 36872721 44336 + protein coding gene IQ calmodulin-binding motif containing 1
2600002D14Rik 16 36862450 to 36862741 291 + sense intronic lncRNA gene RIKEN cDNA 2600002D14 gene
Tssr141023 16 36873428 to 36873435 7 - TSS region transcription start site region 141023
Tssr141024 16 36874806 to 36874862 56 - TSS region transcription start site region 141024
Cpgi8244 16 36874856 to 36875833 977 CpG island CpG island 8244
Tssr138275 16 36875119 to 36875205 86 + TSS region transcription start site region 138275
Gm49599 16 36875140 to 36880234 5094 + unclassified gene predicted gene, 49599
Golgb1 16 36875173 to 36933085 57912 + protein coding gene golgi autoantigen, golgin subfamily b, macrogolgin 1
Tssr138276 16 36875227 to 36875242 15 + TSS region transcription start site region 138276
Tssr138277 16 36880058 to 36880073 15 + TSS region transcription start site region 138277
4930565N06Rik 16 36880519 to 36897189 16670 - antisense lncRNA gene RIKEN cDNA 4930565N06 gene
D16Mit99 16 36880869 to 36881011 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 99
Tssr138278 16 36887338 to 36887357 19 + TSS region transcription start site region 138278
Gm49600 16 36894394 to 36895683 1289 + unclassified gene predicted gene, 49600
Tssr141025 16 36895859 to 36895871 12 - TSS region transcription start site region 141025
Tssr141026 16 36897134 to 36897141 7 - TSS region transcription start site region 141026
Tssr138279 16 36913711 to 36913750 39 + TSS region transcription start site region 138279
Tssr138280 16 36914588 to 36914602 14 + TSS region transcription start site region 138280
Tssr138281 16 36916412 to 36916437 25 + TSS region transcription start site region 138281
Tssr138282 16 36924652 to 36924668 16 + TSS region transcription start site region 138282
Tssr138283 16 36931142 to 36931178 36 + TSS region transcription start site region 138283
Tssr138284 16 36931363 to 36931390 27 + TSS region transcription start site region 138284
Tssr138285 16 36934591 to 36934594 3 + TSS region transcription start site region 138285
Tssr138286 16 36934976 to 36935013 37 + TSS region transcription start site region 138286
Hcls1 16 36934983 to 36963212 28229 + protein coding gene hematopoietic cell specific Lyn substrate 1
Tssr138287 16 36935032 to 36935050 18 + TSS region transcription start site region 138287
Tssr141027 16 36935951 to 36935962 11 - TSS region transcription start site region 141027
Tssr138288 16 36936046 to 36936085 39 + TSS region transcription start site region 138288
Tssr138289 16 36941404 to 36941445 41 + TSS region transcription start site region 138289
Tssr138290 16 36946658 to 36946671 13 + TSS region transcription start site region 138290
Tssr138291 16 36948028 to 36948031 3 + TSS region transcription start site region 138291
Tssr138292 16 36948616 to 36948636 20 + TSS region transcription start site region 138292
Tssr138293 16 36949380 to 36949385 5 + TSS region transcription start site region 138293
Tssr138294 16 36951136 to 36951154 18 + TSS region transcription start site region 138294
Tssr138295 16 36951183 to 36951194 11 + TSS region transcription start site region 138295
Tssr138296 16 36952527 to 36952541 14 + TSS region transcription start site region 138296
Tssr138297 16 36954681 to 36954704 23 + TSS region transcription start site region 138297
Tssr138298 16 36955267 to 36955317 50 + TSS region transcription start site region 138298
Tssr138299 16 36955321 to 36955332 11 + TSS region transcription start site region 138299
Tssr138300 16 36955975 to 36955977 2 + TSS region transcription start site region 138300
Tssr141028 16 36957318 to 36957336 18 - TSS region transcription start site region 141028
Tssr141029 16 36957338 to 36957362 24 - TSS region transcription start site region 141029
Tssr138301 16 36962012 to 36962024 12 + TSS region transcription start site region 138301
Tssr138302 16 36962141 to 36962154 13 + TSS region transcription start site region 138302
Tssr138303 16 36962684 to 36962712 28 + TSS region transcription start site region 138303
Fbxo40 16 36963460 to 36990467 27007 - protein coding gene F-box protein 40
Tssr141030 16 36990145 to 36990150 5 - TSS region transcription start site region 141030
Tssr141031 16 36990162 to 36990173 11 - TSS region transcription start site region 141031
Tssr141032 16 36990175 to 36990185 10 - TSS region transcription start site region 141032
Tssr141033 16 36990207 to 36990264 57 - TSS region transcription start site region 141033
Tssr141034 16 36990272 to 36990283 11 - TSS region transcription start site region 141034
Tssr141035 16 36990449 to 36990467 18 - TSS region transcription start site region 141035
Tssr141036 16 36990509 to 36990540 31 - TSS region transcription start site region 141036
Gm49605 16 36996627 to 36997041 414 + pseudogene predicted gene, 49605
Tssr138304 16 37011294 to 37011297 3 + TSS region transcription start site region 138304
Cpgi8245 16 37011611 to 37012201 590 CpG island CpG island 8245
Tssr138305 16 37011758 to 37011791 33 + TSS region transcription start site region 138305
Polq 16 37011786 to 37095417 83631 + protein coding gene polymerase (DNA directed), theta
Tssr138306 16 37037875 to 37037889 14 + TSS region transcription start site region 138306
Tssr141037 16 37112568 to 37112583 15 - TSS region transcription start site region 141037
Stxbp5l 16 37114942 to 37384962 270020 - protein coding gene syntaxin binding protein 5-like
D16Mit226 16 37160319 to 37160426 107 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-226