Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:36297333-36727650

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cstdc3 16 36305357 to 36312717 7360 + protein coding gene cystatin domain containing 3
Tssr138259 16 36307992 to 36308005 13 + TSS region transcription start site region 138259
Gm25254 16 36312793 to 36312896 103 - snRNA gene predicted gene, 25254
Gm49647 16 36319142 to 36319605 463 + pseudogene predicted gene, 49647
Gm24437 16 36321481 to 36321584 103 + snRNA gene predicted gene, 24437
Cstdc6 16 36321665 to 36334332 12667 - protein coding gene cystatin domain containing 6
Tssr140983 16 36334330 to 36334347 17 - TSS region transcription start site region 140983
Gm25465 16 36359218 to 36359322 104 + snRNA gene predicted gene, 25465
Cstdc5 16 36359382 to 36367570 8188 - protein coding gene cystatin domain containing 5
Tssr140984 16 36359497 to 36359510 13 - TSS region transcription start site region 140984
Gm15845 16 36367070 to 36387406 20336 + antisense lncRNA gene predicted gene 15845
Tssr140985 16 36367534 to 36367551 17 - TSS region transcription start site region 140985
Tssr140986 16 36367623 to 36367637 14 - TSS region transcription start site region 140986
Tssr4867 16 36367724 to 36367766 42 - TSS region transcription start site region 4867
Gm24218 16 36386190 to 36386294 104 + snRNA gene predicted gene, 24218
Gm7260 16 36387978 to 36391122 3144 - protein coding gene predicted gene 7260
Gm22349 16 36403779 to 36403885 106 + snRNA gene predicted gene, 22349
Stfa2 16 36403992 to 36408457 4465 - protein coding gene stefin A2
Tssr140987 16 36408349 to 36408362 13 - TSS region transcription start site region 140987
Tssr140988 16 36408437 to 36408463 26 - TSS region transcription start site region 140988
Gm22263 16 36419087 to 36419190 103 + snRNA gene predicted gene, 22263
Gm49652 16 36419250 to 36420921 1671 - pseudogene predicted gene, 49652
Gm25903 16 36438644 to 36438746 102 + snRNA gene predicted gene, 25903
Stfa3 16 36450537 to 36455392 4855 - protein coding gene stefin A3
Tssr140989 16 36450565 to 36450581 16 - TSS region transcription start site region 140989
Tssr140990 16 36455312 to 36455331 19 - TSS region transcription start site region 140990
Tssr140991 16 36455378 to 36455400 22 - TSS region transcription start site region 140991
Gm49653 16 36472616 to 36473841 1225 - unclassified gene predicted gene, 49653
Casr 16 36493696 to 36562141 68445 - protein coding gene calcium-sensing receptor
Cpgi8236 16 36494908 to 36495880 972 CpG island CpG island 8236
Cpgi8237 16 36509687 to 36509894 207 CpG island CpG island 8237
Gm25902 16 36512333 to 36512650 317 - unclassified non-coding RNA gene predicted gene, 25902
Tssr140992 16 36532169 to 36532184 15 - TSS region transcription start site region 140992
Tssr140993 16 36532186 to 36532213 27 - TSS region transcription start site region 140993
Tssr140994 16 36532218 to 36532235 17 - TSS region transcription start site region 140994
Tssr140995 16 36532239 to 36532261 22 - TSS region transcription start site region 140995
Cpgi8238 16 36561343 to 36562026 683 CpG island CpG island 8238
Tssr140996 16 36561541 to 36561554 13 - TSS region transcription start site region 140996
Tssr140997 16 36561601 to 36561614 13 - TSS region transcription start site region 140997
Tssr140998 16 36561749 to 36561763 14 - TSS region transcription start site region 140998
Tssr140999 16 36561786 to 36561799 13 - TSS region transcription start site region 140999
Gm49662 16 36569145 to 36598497 29352 - lincRNA gene predicted gene, 49662
Gm49664 16 36577566 to 36577715 149 - pseudogene predicted gene, 49664
Tssr4868 16 36580173 to 36580184 11 + TSS region transcription start site region 4868
Gm49663 16 36580461 to 36580714 253 + pseudogene predicted gene, 49663
Tssr141000 16 36598351 to 36598373 22 - TSS region transcription start site region 141000
Cd86 16 36603869 to 36666081 62212 - protein coding gene CD86 antigen
Tssr141001 16 36610805 to 36610816 11 - TSS region transcription start site region 141001
Tssr141002 16 36610851 to 36610875 24 - TSS region transcription start site region 141002
Tssr141003 16 36611164 to 36611165 1 - TSS region transcription start site region 141003
Tssr141004 16 36618564 to 36618575 11 - TSS region transcription start site region 141004
Tssr141005 16 36621589 to 36621600 11 - TSS region transcription start site region 141005
Tssr141006 16 36626538 to 36626551 13 - TSS region transcription start site region 141006
Tssr138260 16 36633293 to 36633331 38 + TSS region transcription start site region 138260
D16Mit11 16 36633635 to 36633808 173 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 11
Cpgi8239 16 36635374 to 36635569 195 CpG island CpG island 8239
Tssr4869 16 36642722 to 36642731 9 - TSS region transcription start site region 4869
Tssr141007 16 36642742 to 36642753 11 - TSS region transcription start site region 141007
Tssr141008 16 36642787 to 36642806 19 - TSS region transcription start site region 141008
Tssr141009 16 36649005 to 36649012 7 - TSS region transcription start site region 141009
Tssr141010 16 36656748 to 36656757 9 - TSS region transcription start site region 141010
Tssr141011 16 36656818 to 36656829 11 - TSS region transcription start site region 141011
Tssr141012 16 36666044 to 36666055 11 - TSS region transcription start site region 141012
Tssr141013 16 36666067 to 36666086 19 - TSS region transcription start site region 141013
Gm41451 16 36686337 to 36688579 2242 - lncRNA gene predicted gene, 41451
Cpgi8240 16 36693737 to 36694373 636 CpG island CpG island 8240
Tssr138261 16 36693956 to 36693965 9 + TSS region transcription start site region 138261
Tssr138262 16 36693972 to 36694000 28 + TSS region transcription start site region 138262
Ildr1 16 36693978 to 36726804 32826 + protein coding gene immunoglobulin-like domain containing receptor 1
Tssr138263 16 36694024 to 36694037 13 + TSS region transcription start site region 138263
Tssr138264 16 36694043 to 36694062 19 + TSS region transcription start site region 138264
Tssr138265 16 36708230 to 36708239 9 + TSS region transcription start site region 138265
Tssr138266 16 36708289 to 36708304 15 + TSS region transcription start site region 138266
Tssr138267 16 36708316 to 36708338 22 + TSS region transcription start site region 138267
Tssr138268 16 36708667 to 36708676 9 + TSS region transcription start site region 138268
Cpgi8241 16 36709424 to 36709724 300 CpG island CpG island 8241
Tssr138269 16 36709783 to 36709797 14 + TSS region transcription start site region 138269
Tssr138270 16 36712035 to 36712044 9 + TSS region transcription start site region 138270
Tssr138271 16 36717724 to 36717756 32 + TSS region transcription start site region 138271
Cpgi8242 16 36722111 to 36722636 525 CpG island CpG island 8242
Tssr138272 16 36722540 to 36722568 28 + TSS region transcription start site region 138272