Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35648102-36448106

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Cpgi8226 16 35651157 to 35651821 664 CpG island CpG island 8226
Tssr140900 16 35652266 to 35652270 4 - TSS region transcription start site region 140900
Cpgi8227 16 35659549 to 35660734 1185 CpG island CpG island 8227
Tssr138221 16 35661110 to 35661112 2 + TSS region transcription start site region 138221
Mdq6 16 35694403 to 35694403 0 QTL mammary ductal QTL 6
Slc49a4 16 35694903 to 35769356 74453 - protein coding gene solute carrier family 49 member 4
Gm25967 16 35722087 to 35722233 146 - snoRNA gene predicted gene, 25967
Cpgi8228 16 35768697 to 35769636 939 CpG island CpG island 8228
Tssr140901 16 35769308 to 35769327 19 - TSS region transcription start site region 140901
Tssr140902 16 35769328 to 35769348 20 - TSS region transcription start site region 140902
Tssr140903 16 35769361 to 35769384 23 - TSS region transcription start site region 140903
Tssr140904 16 35769496 to 35769534 38 - TSS region transcription start site region 140904
Tssr140905 16 35769547 to 35769563 16 - TSS region transcription start site region 140905
Cpgi8229 16 35770072 to 35770774 702 CpG island CpG island 8229
Tssr140906 16 35770230 to 35770255 25 - TSS region transcription start site region 140906
Hspbap1 16 35770375 to 35828477 58102 + protein coding gene Hspb associated protein 1
Tssr138222 16 35770382 to 35770396 14 + TSS region transcription start site region 138222
Tssr138223 16 35770398 to 35770427 29 + TSS region transcription start site region 138223
Tssr140907 16 35771370 to 35771374 4 - TSS region transcription start site region 140907
Tssr138224 16 35775791 to 35775795 4 + TSS region transcription start site region 138224
C530005L23Rik 16 35785217 to 35787037 1820 unclassified gene RIKEN cDNA C530005L23 gene
Gm26838 16 35805947 to 35808946 2999 - antisense lncRNA gene predicted gene, 26838
Tssr138225 16 35809069 to 35809083 14 + TSS region transcription start site region 138225
Gm49728 16 35832030 to 35832261 231 - pseudogene predicted gene, 49728
Tssr140908 16 35832842 to 35832846 4 - TSS region transcription start site region 140908
Parp14 16 35832874 to 35871544 38670 - protein coding gene poly (ADP-ribose) polymerase family, member 14
Tssr140909 16 35837927 to 35837936 9 - TSS region transcription start site region 140909
Tssr140910 16 35841111 to 35841122 11 - TSS region transcription start site region 140910
Tssr140911 16 35841158 to 35841173 15 - TSS region transcription start site region 140911
Tssr140912 16 35841178 to 35841198 20 - TSS region transcription start site region 140912
Tssr140913 16 35841446 to 35841478 32 - TSS region transcription start site region 140913
Tssr140914 16 35841485 to 35841496 11 - TSS region transcription start site region 140914
Tssr140915 16 35841517 to 35841552 35 - TSS region transcription start site region 140915
Tssr140916 16 35841556 to 35841567 11 - TSS region transcription start site region 140916
Tssr140917 16 35841607 to 35841638 31 - TSS region transcription start site region 140917
Tssr140918 16 35843766 to 35843793 27 - TSS region transcription start site region 140918
Tssr140919 16 35843813 to 35843829 16 - TSS region transcription start site region 140919
Tssr140920 16 35843833 to 35843845 12 - TSS region transcription start site region 140920
Tssr140921 16 35843849 to 35843861 12 - TSS region transcription start site region 140921
Tssr140922 16 35843956 to 35843971 15 - TSS region transcription start site region 140922
Tssr140923 16 35843976 to 35843988 12 - TSS region transcription start site region 140923
Tssr140924 16 35843991 to 35844014 23 - TSS region transcription start site region 140924
Tssr140925 16 35844049 to 35844064 15 - TSS region transcription start site region 140925
Tssr140926 16 35844235 to 35844244 9 - TSS region transcription start site region 140926
Tssr140927 16 35844325 to 35844338 13 - TSS region transcription start site region 140927
Tssr140928 16 35844382 to 35844397 15 - TSS region transcription start site region 140928
Tssr140929 16 35845356 to 35845367 11 - TSS region transcription start site region 140929
Tssr140930 16 35845395 to 35845412 17 - TSS region transcription start site region 140930
Tssr140931 16 35848021 to 35848033 12 - TSS region transcription start site region 140931
Tssr140932 16 35852763 to 35852777 14 - TSS region transcription start site region 140932
Tssr140933 16 35853594 to 35853609 15 - TSS region transcription start site region 140933
Tssr140934 16 35853730 to 35853765 35 - TSS region transcription start site region 140934
Tssr140935 16 35854569 to 35854581 12 - TSS region transcription start site region 140935
Tssr140936 16 35855002 to 35855048 46 - TSS region transcription start site region 140936
Tssr140937 16 35856212 to 35856238 26 - TSS region transcription start site region 140937
Tssr140938 16 35856669 to 35856687 18 - TSS region transcription start site region 140938
Tssr138226 16 35857142 to 35857220 78 + TSS region transcription start site region 138226
Tssr140939 16 35857188 to 35857220 32 - TSS region transcription start site region 140939
Tssr140940 16 35857324 to 35857342 18 - TSS region transcription start site region 140940
Tssr140941 16 35857480 to 35857520 40 - TSS region transcription start site region 140941
Tssr140942 16 35857574 to 35857592 18 - TSS region transcription start site region 140942
Tssr140943 16 35857661 to 35857701 40 - TSS region transcription start site region 140943
Tssr140944 16 35857725 to 35857766 41 - TSS region transcription start site region 140944
Tssr140945 16 35857770 to 35857794 24 - TSS region transcription start site region 140945
Tssr140946 16 35857808 to 35857823 15 - TSS region transcription start site region 140946
Tssr140947 16 35857828 to 35857850 22 - TSS region transcription start site region 140947
Tssr140948 16 35857999 to 35858011 12 - TSS region transcription start site region 140948
Tssr140949 16 35858061 to 35858073 12 - TSS region transcription start site region 140949
Tssr140950 16 35858364 to 35858375 11 - TSS region transcription start site region 140950
Tssr140951 16 35858418 to 35858457 39 - TSS region transcription start site region 140951
Tssr140952 16 35858658 to 35858670 12 - TSS region transcription start site region 140952
Tssr140953 16 35859068 to 35859100 32 - TSS region transcription start site region 140953
Tssr140954 16 35860477 to 35860505 28 - TSS region transcription start site region 140954
Tssr140955 16 35866177 to 35866228 51 - TSS region transcription start site region 140955
Gm49730 16 35866179 to 35867951 1772 - unclassified gene predicted gene, 49730
Tssr140956 16 35866257 to 35866299 42 - TSS region transcription start site region 140956
Tssr140957 16 35869181 to 35869194 13 - TSS region transcription start site region 140957
Cpgi8230 16 35870899 to 35871396 497 CpG island CpG island 8230
Tssr140958 16 35871372 to 35871388 16 - TSS region transcription start site region 140958
Tssr138227 16 35871457 to 35871482 25 + TSS region transcription start site region 138227
Tssr138228 16 35871616 to 35871631 15 + TSS region transcription start site region 138228
Tssr140959 16 35872574 to 35872609 35 - TSS region transcription start site region 140959
Gm41467 16 35891417 to 35893173 1756 + pseudogene predicted gene, 41467
Tssr138229 16 35919396 to 35919409 13 + TSS region transcription start site region 138229
Gm10237 16 35920464 to 35920799 335 + pseudogene predicted gene 10237
Tssr138230 16 35923768 to 35923773 5 + TSS region transcription start site region 138230
Dtx3l 16 35926515 to 35939027 12512 - protein coding gene deltex 3-like, E3 ubiquitin ligase
Tssr140960 16 35926951 to 35926955 4 - TSS region transcription start site region 140960
Tssr138231 16 35928669 to 35928699 30 + TSS region transcription start site region 138231
Tssr140961 16 35928844 to 35928865 21 - TSS region transcription start site region 140961
Tssr140962 16 35928883 to 35928903 20 - TSS region transcription start site region 140962
Tssr140963 16 35931021 to 35931036 15 - TSS region transcription start site region 140963
Tssr140964 16 35932528 to 35932548 20 - TSS region transcription start site region 140964
Tssr140965 16 35932729 to 35932740 11 - TSS region transcription start site region 140965
Tssr140966 16 35932767 to 35932778 11 - TSS region transcription start site region 140966
Cpgi8231 16 35938387 to 35939222 835 CpG island CpG island 8231
Parp9 16 35938470 to 35972605 34135 + protein coding gene poly (ADP-ribose) polymerase family, member 9
Tssr138232 16 35938470 to 35938489 19 + TSS region transcription start site region 138232
Tssr138233 16 35938512 to 35938526 14 + TSS region transcription start site region 138233
Tssr140967 16 35938885 to 35938908 23 - TSS region transcription start site region 140967
Tssr140968 16 35938912 to 35938938 26 - TSS region transcription start site region 140968
Tssr140969 16 35938941 to 35938979 38 - TSS region transcription start site region 140969
Tssr138234 16 35938972 to 35939072 100 + TSS region transcription start site region 138234
Tssr140970 16 35939052 to 35939074 22 - TSS region transcription start site region 140970
Tssr140971 16 35939082 to 35939109 27 - TSS region transcription start site region 140971
Tssr140972 16 35939708 to 35939731 23 - TSS region transcription start site region 140972
Tssr140973 16 35939737 to 35939762 25 - TSS region transcription start site region 140973
Tssr138235 16 35939861 to 35939872 11 + TSS region transcription start site region 138235
Tssr138236 16 35948306 to 35948320 14 + TSS region transcription start site region 138236
Tssr138237 16 35957023 to 35957063 40 + TSS region transcription start site region 138237
Gm15564 16 35966752 to 35983230 16478 - antisense lncRNA gene predicted gene 15564
Tssr138238 16 35972185 to 35972219 34 + TSS region transcription start site region 138238
Tssr140974 16 35981353 to 35981372 19 - TSS region transcription start site region 140974
Tssr138239 16 35981593 to 35981631 38 + TSS region transcription start site region 138239
Cpgi8232 16 35981606 to 35981761 155 CpG island CpG island 8232
Tssr140975 16 35981738 to 35981769 31 - TSS region transcription start site region 140975
Cpgi8233 16 35982846 to 35984201 1355 CpG island CpG island 8233
Tssr138240 16 35983089 to 35983106 17 + TSS region transcription start site region 138240
Tssr140976 16 35983234 to 35983269 35 - TSS region transcription start site region 140976
Tssr138241 16 35983307 to 35983395 88 + TSS region transcription start site region 138241
Kpna1 16 35983363 to 36037136 53773 + protein coding gene karyopherin (importin) alpha 1
Tssr138242 16 35983424 to 35983435 11 + TSS region transcription start site region 138242
Tssr140977 16 35983910 to 35983920 10 - TSS region transcription start site region 140977
Tssr138243 16 36026826 to 36026867 41 + TSS region transcription start site region 138243
Tssr138244 16 36034937 to 36034959 22 + TSS region transcription start site region 138244
Tssr138245 16 36035364 to 36035373 9 + TSS region transcription start site region 138245
Cpgi8234 16 36040972 to 36041672 700 CpG island CpG island 8234
Tssr138246 16 36041184 to 36041197 13 + TSS region transcription start site region 138246
Wdr5b 16 36041190 to 36042974 1784 + protein coding gene WD repeat domain 5B
Tssr138247 16 36041198 to 36041234 36 + TSS region transcription start site region 138247
Tssr138248 16 36041266 to 36041300 34 + TSS region transcription start site region 138248
Fam162a 16 36043844 to 36071515 27671 - protein coding gene family with sequence similarity 162, member A
Del(16Fam162a-Stfa2l1)1Gusa 16 36043844 to 36161948 118104 chromosomal deletion deletion, Chr 16, Guy Sauvageau 1
Tssr4864 16 36048102 to 36048106 4 - TSS region transcription start site region 4864
Cpgi8235 16 36071133 to 36072434 1301 CpG island CpG island 8235
Tssr140978 16 36071522 to 36071604 82 - TSS region transcription start site region 140978
Tssr138249 16 36071624 to 36071688 64 + TSS region transcription start site region 138249
Ccdc58 16 36071685 to 36092120 20435 + protein coding gene coiled-coil domain containing 58
Tssr140979 16 36071734 to 36071759 25 - TSS region transcription start site region 140979
Tssr138250 16 36072068 to 36072090 22 + TSS region transcription start site region 138250
Tssr140980 16 36072231 to 36072234 3 - TSS region transcription start site region 140980
Tssr4865 16 36098032 to 36098037 5 - TSS region transcription start site region 4865
Gm41450 16 36102717 to 36111131 8414 + lncRNA gene predicted gene, 41450
Tssr138251 16 36103703 to 36103710 7 + TSS region transcription start site region 138251
Csta1 16 36119946 to 36131189 11243 - protein coding gene cystatin A1
Tssr140981 16 36131089 to 36131102 13 - TSS region transcription start site region 140981
Tssr140982 16 36131156 to 36131191 35 - TSS region transcription start site region 140982
Gm10092 16 36135939 to 36137731 1792 + pseudogene predicted gene 10092
Gm23080 16 36137872 to 36137974 102 - snRNA gene predicted gene, 23080
Tssr138252 16 36156801 to 36156813 12 + TSS region transcription start site region 138252
Stfa2l1 16 36156811 to 36161948 5137 + protein coding gene stefin A2 like 1
Tssr138253 16 36160046 to 36160052 6 + TSS region transcription start site region 138253
Tssr138254 16 36160943 to 36160945 2 + TSS region transcription start site region 138254
Gm22885 16 36162015 to 36162121 106 - snRNA gene predicted gene, 22885
Tssr138255 16 36184082 to 36184095 13 + TSS region transcription start site region 138255
Cstdc4 16 36184212 to 36188111 3899 + protein coding gene cystatin domain containing 4
Gm25024 16 36188174 to 36188277 103 - snRNA gene predicted gene, 25024
Gm6815 16 36194849 to 36198129 3280 - pseudogene predicted gene 6815
Tssr138256 16 36206395 to 36206398 3 + TSS region transcription start site region 138256
Gm10913 16 36209277 to 36209739 462 + pseudogene predicted pseudogene 10913
Csta3 16 36210403 to 36217788 7385 + protein coding gene cystatin A family member 3
Gm24801 16 36217922 to 36218026 104 - snRNA gene predicted gene, 24801
Csta2 16 36221562 to 36257450 35888 + protein coding gene cystatin A family member 2
Gm10813 16 36235604 to 36235697 93 - pseudogene predicted gene 10813
D16Mit4 16 36240487 to 36240618 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 4
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Tssr138257 16 36252872 to 36252877 5 + TSS region transcription start site region 138257
Gm24569 16 36257510 to 36257613 103 - snRNA gene predicted gene, 24569
Tssr4866 16 36277071 to 36277073 2 + TSS region transcription start site region 4866
Tssr138258 16 36277145 to 36277182 37 + TSS region transcription start site region 138258
Stfa1 16 36277148 to 36285371 8223 + protein coding gene stefin A1
Gm23306 16 36285433 to 36285537 104 - snRNA gene predicted gene, 23306
Cstdc3 16 36305357 to 36312717 7360 + protein coding gene cystatin domain containing 3
Tssr138259 16 36307992 to 36308005 13 + TSS region transcription start site region 138259
Gm25254 16 36312793 to 36312896 103 - snRNA gene predicted gene, 25254
Gm49647 16 36319142 to 36319605 463 + pseudogene predicted gene, 49647
Gm24437 16 36321481 to 36321584 103 + snRNA gene predicted gene, 24437
Cstdc6 16 36321665 to 36334332 12667 - protein coding gene cystatin domain containing 6
Tssr140983 16 36334330 to 36334347 17 - TSS region transcription start site region 140983
Gm25465 16 36359218 to 36359322 104 + snRNA gene predicted gene, 25465
Cstdc5 16 36359382 to 36367570 8188 - protein coding gene cystatin domain containing 5
Tssr140984 16 36359497 to 36359510 13 - TSS region transcription start site region 140984
Gm15845 16 36367070 to 36387406 20336 + antisense lncRNA gene predicted gene 15845
Tssr140985 16 36367534 to 36367551 17 - TSS region transcription start site region 140985
Tssr140986 16 36367623 to 36367637 14 - TSS region transcription start site region 140986
Tssr4867 16 36367724 to 36367766 42 - TSS region transcription start site region 4867
Gm24218 16 36386190 to 36386294 104 + snRNA gene predicted gene, 24218
Gm7260 16 36387978 to 36391122 3144 - protein coding gene predicted gene 7260
Gm22349 16 36403779 to 36403885 106 + snRNA gene predicted gene, 22349
Stfa2 16 36403992 to 36408457 4465 - protein coding gene stefin A2
Tssr140987 16 36408349 to 36408362 13 - TSS region transcription start site region 140987
Tssr140988 16 36408437 to 36408463 26 - TSS region transcription start site region 140988
Gm22263 16 36419087 to 36419190 103 + snRNA gene predicted gene, 22263
Gm49652 16 36419250 to 36420921 1671 - pseudogene predicted gene, 49652
Gm25903 16 36438644 to 36438746 102 + snRNA gene predicted gene, 25903