Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35543885-36333908

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Tssr4863 16 35568161 to 35568164 3 + TSS region transcription start site region 4863
Gm5963 16 35573321 to 35573556 235 - pseudogene predicted pseudogene 5963
Tssr140899 16 35573593 to 35573604 11 - TSS region transcription start site region 140899
Tssr138218 16 35580835 to 35580839 4 + TSS region transcription start site region 138218
Tssr138219 16 35585338 to 35585343 5 + TSS region transcription start site region 138219
Tssr138220 16 35612380 to 35612382 2 + TSS region transcription start site region 138220
D16Mit211 16 35626273 to 35626396 123 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 211
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
Cpgi8225 16 35645400 to 35645765 365 CpG island CpG island 8225
Cpgi8226 16 35651157 to 35651821 664 CpG island CpG island 8226
Tssr140900 16 35652266 to 35652270 4 - TSS region transcription start site region 140900
Cpgi8227 16 35659549 to 35660734 1185 CpG island CpG island 8227
Tssr138221 16 35661110 to 35661112 2 + TSS region transcription start site region 138221
Mdq6 16 35694403 to 35694403 0 QTL mammary ductal QTL 6
Slc49a4 16 35694903 to 35769356 74453 - protein coding gene solute carrier family 49 member 4
Gm25967 16 35722087 to 35722233 146 - snoRNA gene predicted gene, 25967
Cpgi8228 16 35768697 to 35769636 939 CpG island CpG island 8228
Tssr140901 16 35769308 to 35769327 19 - TSS region transcription start site region 140901
Tssr140902 16 35769328 to 35769348 20 - TSS region transcription start site region 140902
Tssr140903 16 35769361 to 35769384 23 - TSS region transcription start site region 140903
Tssr140904 16 35769496 to 35769534 38 - TSS region transcription start site region 140904
Tssr140905 16 35769547 to 35769563 16 - TSS region transcription start site region 140905
Cpgi8229 16 35770072 to 35770774 702 CpG island CpG island 8229
Tssr140906 16 35770230 to 35770255 25 - TSS region transcription start site region 140906
Hspbap1 16 35770375 to 35828477 58102 + protein coding gene Hspb associated protein 1
Tssr138222 16 35770382 to 35770396 14 + TSS region transcription start site region 138222
Tssr138223 16 35770398 to 35770427 29 + TSS region transcription start site region 138223
Tssr140907 16 35771370 to 35771374 4 - TSS region transcription start site region 140907
Tssr138224 16 35775791 to 35775795 4 + TSS region transcription start site region 138224
C530005L23Rik 16 35785217 to 35787037 1820 unclassified gene RIKEN cDNA C530005L23 gene
Gm26838 16 35805947 to 35808946 2999 - antisense lncRNA gene predicted gene, 26838
Tssr138225 16 35809069 to 35809083 14 + TSS region transcription start site region 138225
Gm49728 16 35832030 to 35832261 231 - pseudogene predicted gene, 49728
Tssr140908 16 35832842 to 35832846 4 - TSS region transcription start site region 140908
Parp14 16 35832874 to 35871544 38670 - protein coding gene poly (ADP-ribose) polymerase family, member 14
Tssr140909 16 35837927 to 35837936 9 - TSS region transcription start site region 140909
Tssr140910 16 35841111 to 35841122 11 - TSS region transcription start site region 140910
Tssr140911 16 35841158 to 35841173 15 - TSS region transcription start site region 140911
Tssr140912 16 35841178 to 35841198 20 - TSS region transcription start site region 140912
Tssr140913 16 35841446 to 35841478 32 - TSS region transcription start site region 140913
Tssr140914 16 35841485 to 35841496 11 - TSS region transcription start site region 140914
Tssr140915 16 35841517 to 35841552 35 - TSS region transcription start site region 140915
Tssr140916 16 35841556 to 35841567 11 - TSS region transcription start site region 140916
Tssr140917 16 35841607 to 35841638 31 - TSS region transcription start site region 140917
Tssr140918 16 35843766 to 35843793 27 - TSS region transcription start site region 140918
Tssr140919 16 35843813 to 35843829 16 - TSS region transcription start site region 140919
Tssr140920 16 35843833 to 35843845 12 - TSS region transcription start site region 140920
Tssr140921 16 35843849 to 35843861 12 - TSS region transcription start site region 140921
Tssr140922 16 35843956 to 35843971 15 - TSS region transcription start site region 140922
Tssr140923 16 35843976 to 35843988 12 - TSS region transcription start site region 140923
Tssr140924 16 35843991 to 35844014 23 - TSS region transcription start site region 140924
Tssr140925 16 35844049 to 35844064 15 - TSS region transcription start site region 140925
Tssr140926 16 35844235 to 35844244 9 - TSS region transcription start site region 140926
Tssr140927 16 35844325 to 35844338 13 - TSS region transcription start site region 140927
Tssr140928 16 35844382 to 35844397 15 - TSS region transcription start site region 140928
Tssr140929 16 35845356 to 35845367 11 - TSS region transcription start site region 140929
Tssr140930 16 35845395 to 35845412 17 - TSS region transcription start site region 140930
Tssr140931 16 35848021 to 35848033 12 - TSS region transcription start site region 140931
Tssr140932 16 35852763 to 35852777 14 - TSS region transcription start site region 140932
Tssr140933 16 35853594 to 35853609 15 - TSS region transcription start site region 140933
Tssr140934 16 35853730 to 35853765 35 - TSS region transcription start site region 140934
Tssr140935 16 35854569 to 35854581 12 - TSS region transcription start site region 140935
Tssr140936 16 35855002 to 35855048 46 - TSS region transcription start site region 140936
Tssr140937 16 35856212 to 35856238 26 - TSS region transcription start site region 140937
Tssr140938 16 35856669 to 35856687 18 - TSS region transcription start site region 140938
Tssr138226 16 35857142 to 35857220 78 + TSS region transcription start site region 138226
Tssr140939 16 35857188 to 35857220 32 - TSS region transcription start site region 140939
Tssr140940 16 35857324 to 35857342 18 - TSS region transcription start site region 140940
Tssr140941 16 35857480 to 35857520 40 - TSS region transcription start site region 140941
Tssr140942 16 35857574 to 35857592 18 - TSS region transcription start site region 140942
Tssr140943 16 35857661 to 35857701 40 - TSS region transcription start site region 140943
Tssr140944 16 35857725 to 35857766 41 - TSS region transcription start site region 140944
Tssr140945 16 35857770 to 35857794 24 - TSS region transcription start site region 140945
Tssr140946 16 35857808 to 35857823 15 - TSS region transcription start site region 140946
Tssr140947 16 35857828 to 35857850 22 - TSS region transcription start site region 140947
Tssr140948 16 35857999 to 35858011 12 - TSS region transcription start site region 140948
Tssr140949 16 35858061 to 35858073 12 - TSS region transcription start site region 140949
Tssr140950 16 35858364 to 35858375 11 - TSS region transcription start site region 140950
Tssr140951 16 35858418 to 35858457 39 - TSS region transcription start site region 140951
Tssr140952 16 35858658 to 35858670 12 - TSS region transcription start site region 140952
Tssr140953 16 35859068 to 35859100 32 - TSS region transcription start site region 140953
Tssr140954 16 35860477 to 35860505 28 - TSS region transcription start site region 140954
Tssr140955 16 35866177 to 35866228 51 - TSS region transcription start site region 140955
Gm49730 16 35866179 to 35867951 1772 - unclassified gene predicted gene, 49730
Tssr140956 16 35866257 to 35866299 42 - TSS region transcription start site region 140956
Tssr140957 16 35869181 to 35869194 13 - TSS region transcription start site region 140957
Cpgi8230 16 35870899 to 35871396 497 CpG island CpG island 8230
Tssr140958 16 35871372 to 35871388 16 - TSS region transcription start site region 140958
Tssr138227 16 35871457 to 35871482 25 + TSS region transcription start site region 138227
Tssr138228 16 35871616 to 35871631 15 + TSS region transcription start site region 138228
Tssr140959 16 35872574 to 35872609 35 - TSS region transcription start site region 140959
Gm41467 16 35891417 to 35893173 1756 + pseudogene predicted gene, 41467
Tssr138229 16 35919396 to 35919409 13 + TSS region transcription start site region 138229
Gm10237 16 35920464 to 35920799 335 + pseudogene predicted gene 10237
Tssr138230 16 35923768 to 35923773 5 + TSS region transcription start site region 138230
Dtx3l 16 35926515 to 35939027 12512 - protein coding gene deltex 3-like, E3 ubiquitin ligase
Tssr140960 16 35926951 to 35926955 4 - TSS region transcription start site region 140960
Tssr138231 16 35928669 to 35928699 30 + TSS region transcription start site region 138231
Tssr140961 16 35928844 to 35928865 21 - TSS region transcription start site region 140961
Tssr140962 16 35928883 to 35928903 20 - TSS region transcription start site region 140962
Tssr140963 16 35931021 to 35931036 15 - TSS region transcription start site region 140963
Tssr140964 16 35932528 to 35932548 20 - TSS region transcription start site region 140964
Tssr140965 16 35932729 to 35932740 11 - TSS region transcription start site region 140965
Tssr140966 16 35932767 to 35932778 11 - TSS region transcription start site region 140966
Cpgi8231 16 35938387 to 35939222 835 CpG island CpG island 8231
Parp9 16 35938470 to 35972605 34135 + protein coding gene poly (ADP-ribose) polymerase family, member 9
Tssr138232 16 35938470 to 35938489 19 + TSS region transcription start site region 138232
Tssr138233 16 35938512 to 35938526 14 + TSS region transcription start site region 138233
Tssr140967 16 35938885 to 35938908 23 - TSS region transcription start site region 140967
Tssr140968 16 35938912 to 35938938 26 - TSS region transcription start site region 140968
Tssr140969 16 35938941 to 35938979 38 - TSS region transcription start site region 140969
Tssr138234 16 35938972 to 35939072 100 + TSS region transcription start site region 138234
Tssr140970 16 35939052 to 35939074 22 - TSS region transcription start site region 140970
Tssr140971 16 35939082 to 35939109 27 - TSS region transcription start site region 140971
Tssr140972 16 35939708 to 35939731 23 - TSS region transcription start site region 140972
Tssr140973 16 35939737 to 35939762 25 - TSS region transcription start site region 140973
Tssr138235 16 35939861 to 35939872 11 + TSS region transcription start site region 138235
Tssr138236 16 35948306 to 35948320 14 + TSS region transcription start site region 138236
Tssr138237 16 35957023 to 35957063 40 + TSS region transcription start site region 138237
Gm15564 16 35966752 to 35983230 16478 - antisense lncRNA gene predicted gene 15564
Tssr138238 16 35972185 to 35972219 34 + TSS region transcription start site region 138238
Tssr140974 16 35981353 to 35981372 19 - TSS region transcription start site region 140974
Tssr138239 16 35981593 to 35981631 38 + TSS region transcription start site region 138239
Cpgi8232 16 35981606 to 35981761 155 CpG island CpG island 8232
Tssr140975 16 35981738 to 35981769 31 - TSS region transcription start site region 140975
Cpgi8233 16 35982846 to 35984201 1355 CpG island CpG island 8233
Tssr138240 16 35983089 to 35983106 17 + TSS region transcription start site region 138240
Tssr140976 16 35983234 to 35983269 35 - TSS region transcription start site region 140976
Tssr138241 16 35983307 to 35983395 88 + TSS region transcription start site region 138241
Kpna1 16 35983363 to 36037136 53773 + protein coding gene karyopherin (importin) alpha 1
Tssr138242 16 35983424 to 35983435 11 + TSS region transcription start site region 138242
Tssr140977 16 35983910 to 35983920 10 - TSS region transcription start site region 140977
Tssr138243 16 36026826 to 36026867 41 + TSS region transcription start site region 138243
Tssr138244 16 36034937 to 36034959 22 + TSS region transcription start site region 138244
Tssr138245 16 36035364 to 36035373 9 + TSS region transcription start site region 138245
Cpgi8234 16 36040972 to 36041672 700 CpG island CpG island 8234
Tssr138246 16 36041184 to 36041197 13 + TSS region transcription start site region 138246
Wdr5b 16 36041190 to 36042974 1784 + protein coding gene WD repeat domain 5B
Tssr138247 16 36041198 to 36041234 36 + TSS region transcription start site region 138247
Tssr138248 16 36041266 to 36041300 34 + TSS region transcription start site region 138248
Fam162a 16 36043844 to 36071515 27671 - protein coding gene family with sequence similarity 162, member A
Del(16Fam162a-Stfa2l1)1Gusa 16 36043844 to 36161948 118104 chromosomal deletion deletion, Chr 16, Guy Sauvageau 1
Tssr4864 16 36048102 to 36048106 4 - TSS region transcription start site region 4864
Cpgi8235 16 36071133 to 36072434 1301 CpG island CpG island 8235
Tssr140978 16 36071522 to 36071604 82 - TSS region transcription start site region 140978
Tssr138249 16 36071624 to 36071688 64 + TSS region transcription start site region 138249
Ccdc58 16 36071685 to 36092120 20435 + protein coding gene coiled-coil domain containing 58
Tssr140979 16 36071734 to 36071759 25 - TSS region transcription start site region 140979
Tssr138250 16 36072068 to 36072090 22 + TSS region transcription start site region 138250
Tssr140980 16 36072231 to 36072234 3 - TSS region transcription start site region 140980
Tssr4865 16 36098032 to 36098037 5 - TSS region transcription start site region 4865
Gm41450 16 36102717 to 36111131 8414 + lncRNA gene predicted gene, 41450
Tssr138251 16 36103703 to 36103710 7 + TSS region transcription start site region 138251
Csta1 16 36119946 to 36131189 11243 - protein coding gene cystatin A1
Tssr140981 16 36131089 to 36131102 13 - TSS region transcription start site region 140981
Tssr140982 16 36131156 to 36131191 35 - TSS region transcription start site region 140982
Gm10092 16 36135939 to 36137731 1792 + pseudogene predicted gene 10092
Gm23080 16 36137872 to 36137974 102 - snRNA gene predicted gene, 23080
Tssr138252 16 36156801 to 36156813 12 + TSS region transcription start site region 138252
Stfa2l1 16 36156811 to 36161948 5137 + protein coding gene stefin A2 like 1
Tssr138253 16 36160046 to 36160052 6 + TSS region transcription start site region 138253
Tssr138254 16 36160943 to 36160945 2 + TSS region transcription start site region 138254
Gm22885 16 36162015 to 36162121 106 - snRNA gene predicted gene, 22885
Tssr138255 16 36184082 to 36184095 13 + TSS region transcription start site region 138255
Cstdc4 16 36184212 to 36188111 3899 + protein coding gene cystatin domain containing 4
Gm25024 16 36188174 to 36188277 103 - snRNA gene predicted gene, 25024
Gm6815 16 36194849 to 36198129 3280 - pseudogene predicted gene 6815
Tssr138256 16 36206395 to 36206398 3 + TSS region transcription start site region 138256
Gm10913 16 36209277 to 36209739 462 + pseudogene predicted pseudogene 10913
Csta3 16 36210403 to 36217788 7385 + protein coding gene cystatin A family member 3
Gm24801 16 36217922 to 36218026 104 - snRNA gene predicted gene, 24801
Csta2 16 36221562 to 36257450 35888 + protein coding gene cystatin A family member 2
Gm10813 16 36235604 to 36235697 93 - pseudogene predicted gene 10813
D16Mit4 16 36240487 to 36240618 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 4
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Tssr138257 16 36252872 to 36252877 5 + TSS region transcription start site region 138257
Gm24569 16 36257510 to 36257613 103 - snRNA gene predicted gene, 24569
Tssr4866 16 36277071 to 36277073 2 + TSS region transcription start site region 4866
Tssr138258 16 36277145 to 36277182 37 + TSS region transcription start site region 138258
Stfa1 16 36277148 to 36285371 8223 + protein coding gene stefin A1
Gm23306 16 36285433 to 36285537 104 - snRNA gene predicted gene, 23306
Cstdc3 16 36305357 to 36312717 7360 + protein coding gene cystatin domain containing 3
Tssr138259 16 36307992 to 36308005 13 + TSS region transcription start site region 138259
Gm25254 16 36312793 to 36312896 103 - snRNA gene predicted gene, 25254
Gm49647 16 36319142 to 36319605 463 + pseudogene predicted gene, 49647
Gm24437 16 36321481 to 36321584 103 + snRNA gene predicted gene, 24437
Cstdc6 16 36321665 to 36334332 12667 - protein coding gene cystatin domain containing 6