Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35471110-35851112

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdia5 16 35397312 to 35490873 93561 - protein coding gene protein disulfide isomerase associated 5
Cpgi8223 16 35490108 to 35491072 964 CpG island CpG island 8223
Tssr140896 16 35490779 to 35490792 13 - TSS region transcription start site region 140896
Tssr140897 16 35490802 to 35490858 56 - TSS region transcription start site region 140897
Tssr140898 16 35490873 to 35490891 18 - TSS region transcription start site region 140898
Gm18105 16 35501310 to 35502575 1265 + pseudogene predicted gene, 18105
1600019K03Rik 16 35503170 to 35509419 6249 - lincRNA gene RIKEN cDNA 1600019K03 gene
Cpgi8224 16 35540989 to 35542968 1979 CpG island CpG island 8224
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Tssr138217 16 35541275 to 35541339 64 + TSS region transcription start site region 138217
Tssr4863 16 35568161 to 35568164 3 + TSS region transcription start site region 4863
Gm5963 16 35573321 to 35573556 235 - pseudogene predicted pseudogene 5963
Tssr140899 16 35573593 to 35573604 11 - TSS region transcription start site region 140899
Tssr138218 16 35580835 to 35580839 4 + TSS region transcription start site region 138218
Tssr138219 16 35585338 to 35585343 5 + TSS region transcription start site region 138219
Tssr138220 16 35612380 to 35612382 2 + TSS region transcription start site region 138220
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
D16Mit211 16 35626273 to 35626396 123 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 211
Cpgi8225 16 35645400 to 35645765 365 CpG island CpG island 8225
Cpgi8226 16 35651157 to 35651821 664 CpG island CpG island 8226
Tssr140900 16 35652266 to 35652270 4 - TSS region transcription start site region 140900
Cpgi8227 16 35659549 to 35660734 1185 CpG island CpG island 8227
Tssr138221 16 35661110 to 35661112 2 + TSS region transcription start site region 138221
Mdq6 16 35694403 to 35694403 0 QTL mammary ductal QTL 6
Slc49a4 16 35694903 to 35769356 74453 - protein coding gene solute carrier family 49 member 4
Gm25967 16 35722087 to 35722233 146 - snoRNA gene predicted gene, 25967
Cpgi8228 16 35768697 to 35769636 939 CpG island CpG island 8228
Tssr140901 16 35769308 to 35769327 19 - TSS region transcription start site region 140901
Tssr140902 16 35769328 to 35769348 20 - TSS region transcription start site region 140902
Tssr140903 16 35769361 to 35769384 23 - TSS region transcription start site region 140903
Tssr140904 16 35769496 to 35769534 38 - TSS region transcription start site region 140904
Tssr140905 16 35769547 to 35769563 16 - TSS region transcription start site region 140905
Cpgi8229 16 35770072 to 35770774 702 CpG island CpG island 8229
Tssr140906 16 35770230 to 35770255 25 - TSS region transcription start site region 140906
Hspbap1 16 35770375 to 35828477 58102 + protein coding gene Hspb associated protein 1
Tssr138222 16 35770382 to 35770396 14 + TSS region transcription start site region 138222
Tssr138223 16 35770398 to 35770427 29 + TSS region transcription start site region 138223
Tssr140907 16 35771370 to 35771374 4 - TSS region transcription start site region 140907
Tssr138224 16 35775791 to 35775795 4 + TSS region transcription start site region 138224
C530005L23Rik 16 35785217 to 35787037 1820 unclassified gene RIKEN cDNA C530005L23 gene
Gm26838 16 35805947 to 35808946 2999 - antisense lncRNA gene predicted gene, 26838
Tssr138225 16 35809069 to 35809083 14 + TSS region transcription start site region 138225
Gm49728 16 35832030 to 35832261 231 - pseudogene predicted gene, 49728
Tssr140908 16 35832842 to 35832846 4 - TSS region transcription start site region 140908
Parp14 16 35832874 to 35871544 38670 - protein coding gene poly (ADP-ribose) polymerase family, member 14
Tssr140909 16 35837927 to 35837936 9 - TSS region transcription start site region 140909
Tssr140910 16 35841111 to 35841122 11 - TSS region transcription start site region 140910
Tssr140911 16 35841158 to 35841173 15 - TSS region transcription start site region 140911
Tssr140912 16 35841178 to 35841198 20 - TSS region transcription start site region 140912
Tssr140913 16 35841446 to 35841478 32 - TSS region transcription start site region 140913
Tssr140914 16 35841485 to 35841496 11 - TSS region transcription start site region 140914
Tssr140915 16 35841517 to 35841552 35 - TSS region transcription start site region 140915
Tssr140916 16 35841556 to 35841567 11 - TSS region transcription start site region 140916
Tssr140917 16 35841607 to 35841638 31 - TSS region transcription start site region 140917
Tssr140918 16 35843766 to 35843793 27 - TSS region transcription start site region 140918
Tssr140919 16 35843813 to 35843829 16 - TSS region transcription start site region 140919
Tssr140920 16 35843833 to 35843845 12 - TSS region transcription start site region 140920
Tssr140921 16 35843849 to 35843861 12 - TSS region transcription start site region 140921
Tssr140922 16 35843956 to 35843971 15 - TSS region transcription start site region 140922
Tssr140923 16 35843976 to 35843988 12 - TSS region transcription start site region 140923
Tssr140924 16 35843991 to 35844014 23 - TSS region transcription start site region 140924
Tssr140925 16 35844049 to 35844064 15 - TSS region transcription start site region 140925
Tssr140926 16 35844235 to 35844244 9 - TSS region transcription start site region 140926
Tssr140927 16 35844325 to 35844338 13 - TSS region transcription start site region 140927
Tssr140928 16 35844382 to 35844397 15 - TSS region transcription start site region 140928
Tssr140929 16 35845356 to 35845367 11 - TSS region transcription start site region 140929
Tssr140930 16 35845395 to 35845412 17 - TSS region transcription start site region 140930
Tssr140931 16 35848021 to 35848033 12 - TSS region transcription start site region 140931