Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35143842-35583891

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8221 16 35154011 to 35157187 3176 CpG island CpG island 8221
Tssr4861 16 35154857 to 35154869 12 + TSS region transcription start site region 4861
Tssr138212 16 35154870 to 35154929 59 + TSS region transcription start site region 138212
Tssr138213 16 35155530 to 35155545 15 + TSS region transcription start site region 138213
Adcy5 16 35155636 to 35304549 148913 + protein coding gene adenylate cyclase 5
Tssr138214 16 35156506 to 35156548 42 + TSS region transcription start site region 138214
D16Mit167 16 35200724 to 35200846 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 167
Bbq1 16 35200846 to 6659145 -28541701 QTL brain and behavior QTL 1
Tssr138215 16 35211394 to 35211397 3 + TSS region transcription start site region 138215
Gm46550 16 35229172 to 35235944 6772 + lncRNA gene predicted gene, 46550
Gm25179 16 35234796 to 35234923 127 - snRNA gene predicted gene, 25179
Tssr140892 16 35234920 to 35234926 6 - TSS region transcription start site region 140892
Tssr4862 16 35281473 to 35281477 4 - TSS region transcription start site region 4862
Gm49702 16 35284754 to 35286550 1796 + unclassified gene predicted gene, 49702
Sec22a 16 35311131 to 35363918 52787 - protein coding gene SEC22 homolog A, vesicle trafficking protein
Gm49706 16 35320712 to 35323066 2354 - unclassified gene predicted gene, 49706
Cpgi8222 16 35363329 to 35364198 869 CpG island CpG island 8222
Tssr140893 16 35363721 to 35363731 10 - TSS region transcription start site region 140893
Tssr140894 16 35363842 to 35363891 49 - TSS region transcription start site region 140894
Gm25079 16 35382045 to 35382247 202 + snoRNA gene predicted gene, 25079
Gm23518 16 35387933 to 35388085 152 - snRNA gene predicted gene, 23518
Pdia5 16 35397312 to 35490873 93561 - protein coding gene protein disulfide isomerase associated 5
Tssr140895 16 35413180 to 35413192 12 - TSS region transcription start site region 140895
Gm25548 16 35440254 to 35440363 109 - miRNA gene predicted gene, 25548
Tssr138216 16 35451040 to 35451043 3 + TSS region transcription start site region 138216
Cpgi8223 16 35490108 to 35491072 964 CpG island CpG island 8223
Tssr140896 16 35490779 to 35490792 13 - TSS region transcription start site region 140896
Tssr140897 16 35490802 to 35490858 56 - TSS region transcription start site region 140897
Tssr140898 16 35490873 to 35490891 18 - TSS region transcription start site region 140898
Gm18105 16 35501310 to 35502575 1265 + pseudogene predicted gene, 18105
1600019K03Rik 16 35503170 to 35509419 6249 - lincRNA gene RIKEN cDNA 1600019K03 gene
Cpgi8224 16 35540989 to 35542968 1979 CpG island CpG island 8224
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Tssr138217 16 35541275 to 35541339 64 + TSS region transcription start site region 138217
Tssr4863 16 35568161 to 35568164 3 + TSS region transcription start site region 4863
Gm5963 16 35573321 to 35573556 235 - pseudogene predicted pseudogene 5963
Tssr140899 16 35573593 to 35573604 11 - TSS region transcription start site region 140899
Tssr138218 16 35580835 to 35580839 4 + TSS region transcription start site region 138218