Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35125802-35855858

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Mit112 16 35128338 to 35128485 147 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 112
Cpgi8221 16 35154011 to 35157187 3176 CpG island CpG island 8221
Tssr4861 16 35154857 to 35154869 12 + TSS region transcription start site region 4861
Tssr138212 16 35154870 to 35154929 59 + TSS region transcription start site region 138212
Tssr138213 16 35155530 to 35155545 15 + TSS region transcription start site region 138213
Adcy5 16 35155636 to 35304549 148913 + protein coding gene adenylate cyclase 5
Tssr138214 16 35156506 to 35156548 42 + TSS region transcription start site region 138214
D16Mit167 16 35200724 to 35200846 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 167
Bbq1 16 35200846 to 6659145 -28541701 QTL brain and behavior QTL 1
Tssr138215 16 35211394 to 35211397 3 + TSS region transcription start site region 138215
Gm46550 16 35229172 to 35235944 6772 + lncRNA gene predicted gene, 46550
Gm25179 16 35234796 to 35234923 127 - snRNA gene predicted gene, 25179
Tssr140892 16 35234920 to 35234926 6 - TSS region transcription start site region 140892
Tssr4862 16 35281473 to 35281477 4 - TSS region transcription start site region 4862
Gm49702 16 35284754 to 35286550 1796 + unclassified gene predicted gene, 49702
Sec22a 16 35311131 to 35363918 52787 - protein coding gene SEC22 homolog A, vesicle trafficking protein
Gm49706 16 35320712 to 35323066 2354 - unclassified gene predicted gene, 49706
Cpgi8222 16 35363329 to 35364198 869 CpG island CpG island 8222
Tssr140893 16 35363721 to 35363731 10 - TSS region transcription start site region 140893
Tssr140894 16 35363842 to 35363891 49 - TSS region transcription start site region 140894
Gm25079 16 35382045 to 35382247 202 + snoRNA gene predicted gene, 25079
Gm23518 16 35387933 to 35388085 152 - snRNA gene predicted gene, 23518
Pdia5 16 35397312 to 35490873 93561 - protein coding gene protein disulfide isomerase associated 5
Tssr140895 16 35413180 to 35413192 12 - TSS region transcription start site region 140895
Gm25548 16 35440254 to 35440363 109 - miRNA gene predicted gene, 25548
Tssr138216 16 35451040 to 35451043 3 + TSS region transcription start site region 138216
Cpgi8223 16 35490108 to 35491072 964 CpG island CpG island 8223
Tssr140896 16 35490779 to 35490792 13 - TSS region transcription start site region 140896
Tssr140897 16 35490802 to 35490858 56 - TSS region transcription start site region 140897
Tssr140898 16 35490873 to 35490891 18 - TSS region transcription start site region 140898
Gm18105 16 35501310 to 35502575 1265 + pseudogene predicted gene, 18105
1600019K03Rik 16 35503170 to 35509419 6249 - lincRNA gene RIKEN cDNA 1600019K03 gene
Cpgi8224 16 35540989 to 35542968 1979 CpG island CpG island 8224
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Tssr138217 16 35541275 to 35541339 64 + TSS region transcription start site region 138217
Tssr4863 16 35568161 to 35568164 3 + TSS region transcription start site region 4863
Gm5963 16 35573321 to 35573556 235 - pseudogene predicted pseudogene 5963
Tssr140899 16 35573593 to 35573604 11 - TSS region transcription start site region 140899
Tssr138218 16 35580835 to 35580839 4 + TSS region transcription start site region 138218
Tssr138219 16 35585338 to 35585343 5 + TSS region transcription start site region 138219
Tssr138220 16 35612380 to 35612382 2 + TSS region transcription start site region 138220
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
D16Mit211 16 35626273 to 35626396 123 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 211
Cpgi8225 16 35645400 to 35645765 365 CpG island CpG island 8225
Cpgi8226 16 35651157 to 35651821 664 CpG island CpG island 8226
Tssr140900 16 35652266 to 35652270 4 - TSS region transcription start site region 140900
Cpgi8227 16 35659549 to 35660734 1185 CpG island CpG island 8227
Tssr138221 16 35661110 to 35661112 2 + TSS region transcription start site region 138221
Mdq6 16 35694403 to 35694403 0 QTL mammary ductal QTL 6
Slc49a4 16 35694903 to 35769356 74453 - protein coding gene solute carrier family 49 member 4
Gm25967 16 35722087 to 35722233 146 - snoRNA gene predicted gene, 25967
Cpgi8228 16 35768697 to 35769636 939 CpG island CpG island 8228
Tssr140901 16 35769308 to 35769327 19 - TSS region transcription start site region 140901
Tssr140902 16 35769328 to 35769348 20 - TSS region transcription start site region 140902
Tssr140903 16 35769361 to 35769384 23 - TSS region transcription start site region 140903
Tssr140904 16 35769496 to 35769534 38 - TSS region transcription start site region 140904
Tssr140905 16 35769547 to 35769563 16 - TSS region transcription start site region 140905
Cpgi8229 16 35770072 to 35770774 702 CpG island CpG island 8229
Tssr140906 16 35770230 to 35770255 25 - TSS region transcription start site region 140906
Hspbap1 16 35770375 to 35828477 58102 + protein coding gene Hspb associated protein 1
Tssr138222 16 35770382 to 35770396 14 + TSS region transcription start site region 138222
Tssr138223 16 35770398 to 35770427 29 + TSS region transcription start site region 138223
Tssr140907 16 35771370 to 35771374 4 - TSS region transcription start site region 140907
Tssr138224 16 35775791 to 35775795 4 + TSS region transcription start site region 138224
C530005L23Rik 16 35785217 to 35787037 1820 unclassified gene RIKEN cDNA C530005L23 gene
Gm26838 16 35805947 to 35808946 2999 - antisense lncRNA gene predicted gene, 26838
Tssr138225 16 35809069 to 35809083 14 + TSS region transcription start site region 138225
Gm49728 16 35832030 to 35832261 231 - pseudogene predicted gene, 49728
Tssr140908 16 35832842 to 35832846 4 - TSS region transcription start site region 140908
Parp14 16 35832874 to 35871544 38670 - protein coding gene poly (ADP-ribose) polymerase family, member 14
Tssr140909 16 35837927 to 35837936 9 - TSS region transcription start site region 140909
Tssr140910 16 35841111 to 35841122 11 - TSS region transcription start site region 140910
Tssr140911 16 35841158 to 35841173 15 - TSS region transcription start site region 140911
Tssr140912 16 35841178 to 35841198 20 - TSS region transcription start site region 140912
Tssr140913 16 35841446 to 35841478 32 - TSS region transcription start site region 140913
Tssr140914 16 35841485 to 35841496 11 - TSS region transcription start site region 140914
Tssr140915 16 35841517 to 35841552 35 - TSS region transcription start site region 140915
Tssr140916 16 35841556 to 35841567 11 - TSS region transcription start site region 140916
Tssr140917 16 35841607 to 35841638 31 - TSS region transcription start site region 140917
Tssr140918 16 35843766 to 35843793 27 - TSS region transcription start site region 140918
Tssr140919 16 35843813 to 35843829 16 - TSS region transcription start site region 140919
Tssr140920 16 35843833 to 35843845 12 - TSS region transcription start site region 140920
Tssr140921 16 35843849 to 35843861 12 - TSS region transcription start site region 140921
Tssr140922 16 35843956 to 35843971 15 - TSS region transcription start site region 140922
Tssr140923 16 35843976 to 35843988 12 - TSS region transcription start site region 140923
Tssr140924 16 35843991 to 35844014 23 - TSS region transcription start site region 140924
Tssr140925 16 35844049 to 35844064 15 - TSS region transcription start site region 140925
Tssr140926 16 35844235 to 35844244 9 - TSS region transcription start site region 140926
Tssr140927 16 35844325 to 35844338 13 - TSS region transcription start site region 140927
Tssr140928 16 35844382 to 35844397 15 - TSS region transcription start site region 140928
Tssr140929 16 35845356 to 35845367 11 - TSS region transcription start site region 140929
Tssr140930 16 35845395 to 35845412 17 - TSS region transcription start site region 140930
Tssr140931 16 35848021 to 35848033 12 - TSS region transcription start site region 140931
Tssr140932 16 35852763 to 35852777 14 - TSS region transcription start site region 140932
Tssr140933 16 35853594 to 35853609 15 - TSS region transcription start site region 140933
Tssr140934 16 35853730 to 35853765 35 - TSS region transcription start site region 140934
Tssr140935 16 35854569 to 35854581 12 - TSS region transcription start site region 140935
Tssr140936 16 35855002 to 35855048 46 - TSS region transcription start site region 140936