Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:34978329-35749198

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mylk 16 34745210 to 35002420 257210 + protein coding gene myosin, light polypeptide kinase
Tssr138181 16 34994847 to 34994869 22 + TSS region transcription start site region 138181
Tssr138182 16 34994878 to 34994944 66 + TSS region transcription start site region 138182
Tssr138183 16 34994945 to 34994959 14 + TSS region transcription start site region 138183
Tssr4860 16 34994970 to 34994975 5 + TSS region transcription start site region 4860
Tssr138184 16 34995003 to 34995018 15 + TSS region transcription start site region 138184
Tssr138185 16 35000514 to 35000540 26 + TSS region transcription start site region 138185
Tssr138186 16 35000572 to 35000579 7 + TSS region transcription start site region 138186
Tssr140891 16 35000586 to 35000595 9 - TSS region transcription start site region 140891
Tssr138187 16 35000636 to 35000656 20 + TSS region transcription start site region 138187
Tssr138188 16 35000720 to 35000731 11 + TSS region transcription start site region 138188
Tssr138189 16 35000917 to 35000940 23 + TSS region transcription start site region 138189
Tssr138190 16 35000972 to 35001002 30 + TSS region transcription start site region 138190
Tssr138191 16 35001108 to 35001130 22 + TSS region transcription start site region 138191
Tssr138192 16 35001205 to 35001221 16 + TSS region transcription start site region 138192
Tssr138193 16 35001268 to 35001283 15 + TSS region transcription start site region 138193
Tssr138194 16 35001324 to 35001340 16 + TSS region transcription start site region 138194
Tssr138195 16 35001395 to 35001408 13 + TSS region transcription start site region 138195
Tssr138196 16 35001428 to 35001444 16 + TSS region transcription start site region 138196
Tssr138197 16 35001453 to 35001465 12 + TSS region transcription start site region 138197
Tssr138198 16 35001667 to 35001731 64 + TSS region transcription start site region 138198
Tssr138199 16 35001760 to 35001800 40 + TSS region transcription start site region 138199
Tssr138200 16 35001817 to 35001828 11 + TSS region transcription start site region 138200
Gm21691 16 35003853 to 35022250 18397 - antisense lncRNA gene predicted gene, 21691
D16Mit104 16 35018218 to 35018357 139 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 104
Cpgi8220 16 35022085 to 35023304 1219 CpG island CpG island 8220
Tssr138201 16 35022394 to 35022440 46 + TSS region transcription start site region 138201
Hacd2 16 35022428 to 35109177 86749 + protein coding gene 3-hydroxyacyl-CoA dehydratase 2
Tssr138202 16 35022450 to 35022479 29 + TSS region transcription start site region 138202
Tssr138203 16 35023459 to 35023461 2 + TSS region transcription start site region 138203
Tssr138204 16 35025608 to 35025643 35 + TSS region transcription start site region 138204
Tssr138205 16 35025646 to 35025667 21 + TSS region transcription start site region 138205
Tssr138206 16 35063021 to 35063026 5 + TSS region transcription start site region 138206
Tssr138207 16 35068521 to 35068526 5 + TSS region transcription start site region 138207
Tssr138208 16 35068535 to 35068549 14 + TSS region transcription start site region 138208
Tssr138209 16 35068557 to 35068581 24 + TSS region transcription start site region 138209
Tssr138210 16 35068583 to 35068602 19 + TSS region transcription start site region 138210
Tssr138211 16 35093769 to 35093773 4 + TSS region transcription start site region 138211
D16Mit112 16 35128338 to 35128485 147 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 112
Cpgi8221 16 35154011 to 35157187 3176 CpG island CpG island 8221
Tssr4861 16 35154857 to 35154869 12 + TSS region transcription start site region 4861
Tssr138212 16 35154870 to 35154929 59 + TSS region transcription start site region 138212
Tssr138213 16 35155530 to 35155545 15 + TSS region transcription start site region 138213
Adcy5 16 35155636 to 35304549 148913 + protein coding gene adenylate cyclase 5
Tssr138214 16 35156506 to 35156548 42 + TSS region transcription start site region 138214
D16Mit167 16 35200724 to 35200846 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 167
Bbq1 16 35200846 to 6659145 -28541701 QTL brain and behavior QTL 1
Tssr138215 16 35211394 to 35211397 3 + TSS region transcription start site region 138215
Gm46550 16 35229172 to 35235944 6772 + lncRNA gene predicted gene, 46550
Gm25179 16 35234796 to 35234923 127 - snRNA gene predicted gene, 25179
Tssr140892 16 35234920 to 35234926 6 - TSS region transcription start site region 140892
Tssr4862 16 35281473 to 35281477 4 - TSS region transcription start site region 4862
Gm49702 16 35284754 to 35286550 1796 + unclassified gene predicted gene, 49702
Sec22a 16 35311131 to 35363918 52787 - protein coding gene SEC22 homolog A, vesicle trafficking protein
Gm49706 16 35320712 to 35323066 2354 - unclassified gene predicted gene, 49706
Cpgi8222 16 35363329 to 35364198 869 CpG island CpG island 8222
Tssr140893 16 35363721 to 35363731 10 - TSS region transcription start site region 140893
Tssr140894 16 35363842 to 35363891 49 - TSS region transcription start site region 140894
Gm25079 16 35382045 to 35382247 202 + snoRNA gene predicted gene, 25079
Gm23518 16 35387933 to 35388085 152 - snRNA gene predicted gene, 23518
Pdia5 16 35397312 to 35490873 93561 - protein coding gene protein disulfide isomerase associated 5
Tssr140895 16 35413180 to 35413192 12 - TSS region transcription start site region 140895
Gm25548 16 35440254 to 35440363 109 - miRNA gene predicted gene, 25548
Tssr138216 16 35451040 to 35451043 3 + TSS region transcription start site region 138216
Cpgi8223 16 35490108 to 35491072 964 CpG island CpG island 8223
Tssr140896 16 35490779 to 35490792 13 - TSS region transcription start site region 140896
Tssr140897 16 35490802 to 35490858 56 - TSS region transcription start site region 140897
Tssr140898 16 35490873 to 35490891 18 - TSS region transcription start site region 140898
Gm18105 16 35501310 to 35502575 1265 + pseudogene predicted gene, 18105
1600019K03Rik 16 35503170 to 35509419 6249 - lincRNA gene RIKEN cDNA 1600019K03 gene
Cpgi8224 16 35540989 to 35542968 1979 CpG island CpG island 8224
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Tssr138217 16 35541275 to 35541339 64 + TSS region transcription start site region 138217
Tssr4863 16 35568161 to 35568164 3 + TSS region transcription start site region 4863
Gm5963 16 35573321 to 35573556 235 - pseudogene predicted pseudogene 5963
Tssr140899 16 35573593 to 35573604 11 - TSS region transcription start site region 140899
Tssr138218 16 35580835 to 35580839 4 + TSS region transcription start site region 138218
Tssr138219 16 35585338 to 35585343 5 + TSS region transcription start site region 138219
Tssr138220 16 35612380 to 35612382 2 + TSS region transcription start site region 138220
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
D16Mit211 16 35626273 to 35626396 123 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 211
Cpgi8225 16 35645400 to 35645765 365 CpG island CpG island 8225
Cpgi8226 16 35651157 to 35651821 664 CpG island CpG island 8226
Tssr140900 16 35652266 to 35652270 4 - TSS region transcription start site region 140900
Cpgi8227 16 35659549 to 35660734 1185 CpG island CpG island 8227
Tssr138221 16 35661110 to 35661112 2 + TSS region transcription start site region 138221
Mdq6 16 35694403 to 35694403 0 QTL mammary ductal QTL 6
Slc49a4 16 35694903 to 35769356 74453 - protein coding gene solute carrier family 49 member 4
Gm25967 16 35722087 to 35722233 146 - snoRNA gene predicted gene, 25967