Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:34539857-35769869

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kalrn 16 33969073 to 34573291 604218 - protein coding gene kalirin, RhoGEF kinase
Tssr140882 16 34542162 to 34542166 4 - TSS region transcription start site region 140882
Tssr140883 16 34566507 to 34566510 3 - TSS region transcription start site region 140883
Cpgi8217 16 34572186 to 34574328 2142 CpG island CpG island 8217
Tssr140884 16 34573526 to 34573554 28 - TSS region transcription start site region 140884
Tssr140885 16 34573921 to 34573936 15 - TSS region transcription start site region 140885
Tssr138148 16 34649893 to 34649917 24 + TSS region transcription start site region 138148
Tssr138149 16 34649920 to 34649944 24 + TSS region transcription start site region 138149
Ropn1 16 34649921 to 34678618 28697 + protein coding gene ropporin, rhophilin associated protein 1
Tssr138150 16 34649948 to 34649957 9 + TSS region transcription start site region 138150
Tssr138151 16 34651202 to 34651219 17 + TSS region transcription start site region 138151
Tssr138152 16 34651226 to 34651235 9 + TSS region transcription start site region 138152
Tssr138153 16 34660752 to 34660758 6 + TSS region transcription start site region 138153
Gm35150 16 34683046 to 34690706 7660 - lncRNA gene predicted gene, 35150
Tssr138154 16 34690548 to 34690559 11 + TSS region transcription start site region 138154
Cpgi8218 16 34690551 to 34691043 492 CpG island CpG island 8218
Ccdc14 16 34690616 to 34725202 34586 + protein coding gene coiled-coil domain containing 14
Tssr138155 16 34690703 to 34690720 17 + TSS region transcription start site region 138155
Tssr138156 16 34690748 to 34690774 26 + TSS region transcription start site region 138156
Cpgi8219 16 34744906 to 34745657 751 CpG island CpG island 8219
Tssr138157 16 34745201 to 34745216 15 + TSS region transcription start site region 138157
Mylk 16 34745210 to 35002420 257210 + protein coding gene myosin, light polypeptide kinase
Tssr138158 16 34784779 to 34784793 14 + TSS region transcription start site region 138158
Tssr138159 16 34784876 to 34784886 10 + TSS region transcription start site region 138159
Tssr138160 16 34784896 to 34784909 13 + TSS region transcription start site region 138160
Tssr138161 16 34784917 to 34784935 18 + TSS region transcription start site region 138161
Tssr138162 16 34807199 to 34807217 18 + TSS region transcription start site region 138162
Tssr138163 16 34807225 to 34807309 84 + TSS region transcription start site region 138163
Tssr138164 16 34807321 to 34807344 23 + TSS region transcription start site region 138164
Tssr138165 16 34819607 to 34819608 1 + TSS region transcription start site region 138165
Tssr138166 16 34883432 to 34883441 9 + TSS region transcription start site region 138166
Tssr138167 16 34883526 to 34883545 19 + TSS region transcription start site region 138167
Tssr138168 16 34887611 to 34887615 4 + TSS region transcription start site region 138168
Tssr138169 16 34900231 to 34900248 17 + TSS region transcription start site region 138169
Tssr4859 16 34921063 to 34921075 12 + TSS region transcription start site region 4859
Tssr138170 16 34921400 to 34921405 5 + TSS region transcription start site region 138170
Tssr138171 16 34921480 to 34921491 11 + TSS region transcription start site region 138171
Tssr138172 16 34921504 to 34921517 13 + TSS region transcription start site region 138172
Tssr138173 16 34921518 to 34921594 76 + TSS region transcription start site region 138173
Tssr138174 16 34921614 to 34921636 22 + TSS region transcription start site region 138174
Tssr138175 16 34921838 to 34921847 9 + TSS region transcription start site region 138175
Tssr138176 16 34922094 to 34922103 9 + TSS region transcription start site region 138176
Tssr138177 16 34926188 to 34926194 6 + TSS region transcription start site region 138177
Tssr138178 16 34929278 to 34929281 3 + TSS region transcription start site region 138178
Tssr138179 16 34930333 to 34930350 17 + TSS region transcription start site region 138179
1700119H24Rik 16 34935855 to 34939329 3474 - antisense lncRNA gene RIKEN cDNA 1700119H24 gene
E130310I04Rik 16 34943175 to 34958994 15819 - antisense lncRNA gene RIKEN cDNA E130310I04 gene
Tssr140886 16 34943269 to 34943287 18 - TSS region transcription start site region 140886
Tssr138180 16 34952539 to 34952561 22 + TSS region transcription start site region 138180
Tssr140887 16 34958802 to 34958813 11 - TSS region transcription start site region 140887
Tssr140888 16 34958816 to 34958835 19 - TSS region transcription start site region 140888
Tssr140889 16 34958844 to 34958863 19 - TSS region transcription start site region 140889
Tssr140890 16 34958868 to 34958882 14 - TSS region transcription start site region 140890
Tssr138181 16 34994847 to 34994869 22 + TSS region transcription start site region 138181
Tssr138182 16 34994878 to 34994944 66 + TSS region transcription start site region 138182
Tssr138183 16 34994945 to 34994959 14 + TSS region transcription start site region 138183
Tssr4860 16 34994970 to 34994975 5 + TSS region transcription start site region 4860
Tssr138184 16 34995003 to 34995018 15 + TSS region transcription start site region 138184
Tssr138185 16 35000514 to 35000540 26 + TSS region transcription start site region 138185
Tssr138186 16 35000572 to 35000579 7 + TSS region transcription start site region 138186
Tssr140891 16 35000586 to 35000595 9 - TSS region transcription start site region 140891
Tssr138187 16 35000636 to 35000656 20 + TSS region transcription start site region 138187
Tssr138188 16 35000720 to 35000731 11 + TSS region transcription start site region 138188
Tssr138189 16 35000917 to 35000940 23 + TSS region transcription start site region 138189
Tssr138190 16 35000972 to 35001002 30 + TSS region transcription start site region 138190
Tssr138191 16 35001108 to 35001130 22 + TSS region transcription start site region 138191
Tssr138192 16 35001205 to 35001221 16 + TSS region transcription start site region 138192
Tssr138193 16 35001268 to 35001283 15 + TSS region transcription start site region 138193
Tssr138194 16 35001324 to 35001340 16 + TSS region transcription start site region 138194
Tssr138195 16 35001395 to 35001408 13 + TSS region transcription start site region 138195
Tssr138196 16 35001428 to 35001444 16 + TSS region transcription start site region 138196
Tssr138197 16 35001453 to 35001465 12 + TSS region transcription start site region 138197
Tssr138198 16 35001667 to 35001731 64 + TSS region transcription start site region 138198
Tssr138199 16 35001760 to 35001800 40 + TSS region transcription start site region 138199
Tssr138200 16 35001817 to 35001828 11 + TSS region transcription start site region 138200
Gm21691 16 35003853 to 35022250 18397 - antisense lncRNA gene predicted gene, 21691
D16Mit104 16 35018218 to 35018357 139 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 104
Cpgi8220 16 35022085 to 35023304 1219 CpG island CpG island 8220
Tssr138201 16 35022394 to 35022440 46 + TSS region transcription start site region 138201
Hacd2 16 35022428 to 35109177 86749 + protein coding gene 3-hydroxyacyl-CoA dehydratase 2
Tssr138202 16 35022450 to 35022479 29 + TSS region transcription start site region 138202
Tssr138203 16 35023459 to 35023461 2 + TSS region transcription start site region 138203
Tssr138204 16 35025608 to 35025643 35 + TSS region transcription start site region 138204
Tssr138205 16 35025646 to 35025667 21 + TSS region transcription start site region 138205
Tssr138206 16 35063021 to 35063026 5 + TSS region transcription start site region 138206
Tssr138207 16 35068521 to 35068526 5 + TSS region transcription start site region 138207
Tssr138208 16 35068535 to 35068549 14 + TSS region transcription start site region 138208
Tssr138209 16 35068557 to 35068581 24 + TSS region transcription start site region 138209
Tssr138210 16 35068583 to 35068602 19 + TSS region transcription start site region 138210
Tssr138211 16 35093769 to 35093773 4 + TSS region transcription start site region 138211
D16Mit112 16 35128338 to 35128485 147 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 112
Cpgi8221 16 35154011 to 35157187 3176 CpG island CpG island 8221
Tssr4861 16 35154857 to 35154869 12 + TSS region transcription start site region 4861
Tssr138212 16 35154870 to 35154929 59 + TSS region transcription start site region 138212
Tssr138213 16 35155530 to 35155545 15 + TSS region transcription start site region 138213
Adcy5 16 35155636 to 35304549 148913 + protein coding gene adenylate cyclase 5
Tssr138214 16 35156506 to 35156548 42 + TSS region transcription start site region 138214
D16Mit167 16 35200724 to 35200846 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 167
Bbq1 16 35200846 to 6659145 -28541701 QTL brain and behavior QTL 1
Tssr138215 16 35211394 to 35211397 3 + TSS region transcription start site region 138215
Gm46550 16 35229172 to 35235944 6772 + lncRNA gene predicted gene, 46550
Gm25179 16 35234796 to 35234923 127 - snRNA gene predicted gene, 25179
Tssr140892 16 35234920 to 35234926 6 - TSS region transcription start site region 140892
Tssr4862 16 35281473 to 35281477 4 - TSS region transcription start site region 4862
Gm49702 16 35284754 to 35286550 1796 + unclassified gene predicted gene, 49702
Sec22a 16 35311131 to 35363918 52787 - protein coding gene SEC22 homolog A, vesicle trafficking protein
Gm49706 16 35320712 to 35323066 2354 - unclassified gene predicted gene, 49706
Cpgi8222 16 35363329 to 35364198 869 CpG island CpG island 8222
Tssr140893 16 35363721 to 35363731 10 - TSS region transcription start site region 140893
Tssr140894 16 35363842 to 35363891 49 - TSS region transcription start site region 140894
Gm25079 16 35382045 to 35382247 202 + snoRNA gene predicted gene, 25079
Gm23518 16 35387933 to 35388085 152 - snRNA gene predicted gene, 23518
Pdia5 16 35397312 to 35490873 93561 - protein coding gene protein disulfide isomerase associated 5
Tssr140895 16 35413180 to 35413192 12 - TSS region transcription start site region 140895
Gm25548 16 35440254 to 35440363 109 - miRNA gene predicted gene, 25548
Tssr138216 16 35451040 to 35451043 3 + TSS region transcription start site region 138216
Cpgi8223 16 35490108 to 35491072 964 CpG island CpG island 8223
Tssr140896 16 35490779 to 35490792 13 - TSS region transcription start site region 140896
Tssr140897 16 35490802 to 35490858 56 - TSS region transcription start site region 140897
Tssr140898 16 35490873 to 35490891 18 - TSS region transcription start site region 140898
Gm18105 16 35501310 to 35502575 1265 + pseudogene predicted gene, 18105
1600019K03Rik 16 35503170 to 35509419 6249 - lincRNA gene RIKEN cDNA 1600019K03 gene
Cpgi8224 16 35540989 to 35542968 1979 CpG island CpG island 8224
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Tssr138217 16 35541275 to 35541339 64 + TSS region transcription start site region 138217
Tssr4863 16 35568161 to 35568164 3 + TSS region transcription start site region 4863
Gm5963 16 35573321 to 35573556 235 - pseudogene predicted pseudogene 5963
Tssr140899 16 35573593 to 35573604 11 - TSS region transcription start site region 140899
Tssr138218 16 35580835 to 35580839 4 + TSS region transcription start site region 138218
Tssr138219 16 35585338 to 35585343 5 + TSS region transcription start site region 138219
Tssr138220 16 35612380 to 35612382 2 + TSS region transcription start site region 138220
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
D16Mit211 16 35626273 to 35626396 123 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 211
Cpgi8225 16 35645400 to 35645765 365 CpG island CpG island 8225
Cpgi8226 16 35651157 to 35651821 664 CpG island CpG island 8226
Tssr140900 16 35652266 to 35652270 4 - TSS region transcription start site region 140900
Cpgi8227 16 35659549 to 35660734 1185 CpG island CpG island 8227
Tssr138221 16 35661110 to 35661112 2 + TSS region transcription start site region 138221
Mdq6 16 35694403 to 35694403 0 QTL mammary ductal QTL 6
Slc49a4 16 35694903 to 35769356 74453 - protein coding gene solute carrier family 49 member 4
Gm25967 16 35722087 to 35722233 146 - snoRNA gene predicted gene, 25967
Cpgi8228 16 35768697 to 35769636 939 CpG island CpG island 8228
Tssr140901 16 35769308 to 35769327 19 - TSS region transcription start site region 140901
Tssr140902 16 35769328 to 35769348 20 - TSS region transcription start site region 140902
Tssr140903 16 35769361 to 35769384 23 - TSS region transcription start site region 140903
Tssr140904 16 35769496 to 35769534 38 - TSS region transcription start site region 140904
Tssr140905 16 35769547 to 35769563 16 - TSS region transcription start site region 140905