Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:33916802-34877498

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itgb5 16 33829665 to 33949338 119673 + protein coding gene integrin beta 5
Umps 16 33954784 to 33967003 12219 - protein coding gene uridine monophosphate synthetase
Tssr4856 16 33959838 to 33959842 4 + TSS region transcription start site region 4856
Gm15829 16 33966239 to 33967312 1073 + antisense lncRNA gene predicted gene 15829
Cpgi8213 16 33966596 to 33967096 500 CpG island CpG island 8213
Tssr140851 16 33966995 to 33967010 15 - TSS region transcription start site region 140851
Tssr140852 16 33967032 to 33967043 11 - TSS region transcription start site region 140852
Kalrn 16 33969073 to 34573291 604218 - protein coding gene kalirin, RhoGEF kinase
Tssr138144 16 33985034 to 33985036 2 + TSS region transcription start site region 138144
Gm46566 16 34000644 to 34006637 5993 - lncRNA gene predicted gene, 46566
Gm49594 16 34006843 to 34007457 614 - pseudogene predicted gene, 49594
Tssr140853 16 34013440 to 34013444 4 - TSS region transcription start site region 140853
Tssr4857 16 34034451 to 34034457 6 - TSS region transcription start site region 4857
Tssr140854 16 34040284 to 34040296 12 - TSS region transcription start site region 140854
Tssr140855 16 34081798 to 34081821 23 - TSS region transcription start site region 140855
Tssr140856 16 34081893 to 34081938 45 - TSS region transcription start site region 140856
Cpgi8214 16 34094258 to 34094543 285 CpG island CpG island 8214
Cpgi8215 16 34095519 to 34096137 618 CpG island CpG island 8215
Tssr140857 16 34095983 to 34096060 77 - TSS region transcription start site region 140857
Gm41448 16 34119812 to 34139809 19997 + lncRNA gene predicted gene, 41448
Tssr138145 16 34120081 to 34120093 12 + TSS region transcription start site region 138145
Tssr138146 16 34120129 to 34120178 49 + TSS region transcription start site region 138146
Tssr138147 16 34175796 to 34175806 10 + TSS region transcription start site region 138147
Tssr140858 16 34175812 to 34175830 18 - TSS region transcription start site region 140858
Tssr140859 16 34191783 to 34191787 4 - TSS region transcription start site region 140859
Tssr140860 16 34199427 to 34199458 31 - TSS region transcription start site region 140860
Tssr140861 16 34204831 to 34204833 2 - TSS region transcription start site region 140861
Tssr140862 16 34223189 to 34223198 9 - TSS region transcription start site region 140862
Tssr140863 16 34239164 to 34239172 8 - TSS region transcription start site region 140863
Tssr140864 16 34255429 to 34255440 11 - TSS region transcription start site region 140864
Tssr140865 16 34255662 to 34255668 6 - TSS region transcription start site region 140865
Tssr140866 16 34262830 to 34262841 11 - TSS region transcription start site region 140866
Tssr140867 16 34262878 to 34262888 10 - TSS region transcription start site region 140867
Tssr140868 16 34262894 to 34262920 26 - TSS region transcription start site region 140868
Tssr4858 16 34262935 to 34262942 7 - TSS region transcription start site region 4858
Tssr140869 16 34262945 to 34262972 27 - TSS region transcription start site region 140869
Tssr140870 16 34263002 to 34263013 11 - TSS region transcription start site region 140870
Tssr140871 16 34263026 to 34263038 12 - TSS region transcription start site region 140871
Tssr140872 16 34263049 to 34263065 16 - TSS region transcription start site region 140872
Tssr140873 16 34263076 to 34263099 23 - TSS region transcription start site region 140873
Tssr140874 16 34263179 to 34263208 29 - TSS region transcription start site region 140874
Tssr140875 16 34263211 to 34263249 38 - TSS region transcription start site region 140875
Cpgi8216 16 34356916 to 34357193 277 CpG island CpG island 8216
Cet1 16 34396802 to 34397498 696 unclassified gene cerebellum expressed transcript 1
Tssr140876 16 34514044 to 34514056 12 - TSS region transcription start site region 140876
Tssr140877 16 34514063 to 34514079 16 - TSS region transcription start site region 140877
Tssr140878 16 34514084 to 34514128 44 - TSS region transcription start site region 140878
Tssr140879 16 34514175 to 34514184 9 - TSS region transcription start site region 140879
Tssr140880 16 34514205 to 34514211 6 - TSS region transcription start site region 140880
Tssr140881 16 34518188 to 34518200 12 - TSS region transcription start site region 140881
Tssr140882 16 34542162 to 34542166 4 - TSS region transcription start site region 140882
Tssr140883 16 34566507 to 34566510 3 - TSS region transcription start site region 140883
Cpgi8217 16 34572186 to 34574328 2142 CpG island CpG island 8217
Tssr140884 16 34573526 to 34573554 28 - TSS region transcription start site region 140884
Tssr140885 16 34573921 to 34573936 15 - TSS region transcription start site region 140885
Tssr138148 16 34649893 to 34649917 24 + TSS region transcription start site region 138148
Tssr138149 16 34649920 to 34649944 24 + TSS region transcription start site region 138149
Ropn1 16 34649921 to 34678618 28697 + protein coding gene ropporin, rhophilin associated protein 1
Tssr138150 16 34649948 to 34649957 9 + TSS region transcription start site region 138150
Tssr138151 16 34651202 to 34651219 17 + TSS region transcription start site region 138151
Tssr138152 16 34651226 to 34651235 9 + TSS region transcription start site region 138152
Tssr138153 16 34660752 to 34660758 6 + TSS region transcription start site region 138153
Gm35150 16 34683046 to 34690706 7660 - lncRNA gene predicted gene, 35150
Tssr138154 16 34690548 to 34690559 11 + TSS region transcription start site region 138154
Cpgi8218 16 34690551 to 34691043 492 CpG island CpG island 8218
Ccdc14 16 34690616 to 34725202 34586 + protein coding gene coiled-coil domain containing 14
Tssr138155 16 34690703 to 34690720 17 + TSS region transcription start site region 138155
Tssr138156 16 34690748 to 34690774 26 + TSS region transcription start site region 138156
Cpgi8219 16 34744906 to 34745657 751 CpG island CpG island 8219
Tssr138157 16 34745201 to 34745216 15 + TSS region transcription start site region 138157
Mylk 16 34745210 to 35002420 257210 + protein coding gene myosin, light polypeptide kinase
Tssr138158 16 34784779 to 34784793 14 + TSS region transcription start site region 138158
Tssr138159 16 34784876 to 34784886 10 + TSS region transcription start site region 138159
Tssr138160 16 34784896 to 34784909 13 + TSS region transcription start site region 138160
Tssr138161 16 34784917 to 34784935 18 + TSS region transcription start site region 138161
Tssr138162 16 34807199 to 34807217 18 + TSS region transcription start site region 138162
Tssr138163 16 34807225 to 34807309 84 + TSS region transcription start site region 138163
Tssr138164 16 34807321 to 34807344 23 + TSS region transcription start site region 138164
Tssr138165 16 34819607 to 34819608 1 + TSS region transcription start site region 138165