Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:33000420-33761706

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrch3 16 32914100 to 33015647 101547 + protein coding gene leucine-rich repeats and calponin homology (CH) domain containing 3
Gm17106 16 32985854 to 33108601 122747 - unclassified non-coding RNA gene predicted gene 17106
n-R5s33 16 33001903 to 33002021 118 + rRNA gene nuclear encoded rRNA 5S 33
Iqcg 16 33014270 to 33056418 42148 - protein coding gene IQ motif containing G
Tssr140836 16 33023911 to 33023948 37 - TSS region transcription start site region 140836
Tssr140837 16 33056174 to 33056211 37 - TSS region transcription start site region 140837
Cpgi8201 16 33056260 to 33057189 929 CpG island CpG island 8201
Tssr140838 16 33056389 to 33056429 40 - TSS region transcription start site region 140838
Rpl35a 16 33056453 to 33060189 3736 + protein coding gene ribosomal protein L35A
Tssr138073 16 33056456 to 33056495 39 + TSS region transcription start site region 138073
Tssr138074 16 33056499 to 33056510 11 + TSS region transcription start site region 138074
Tssr138075 16 33056515 to 33056531 16 + TSS region transcription start site region 138075
Tssr138076 16 33056544 to 33056570 26 + TSS region transcription start site region 138076
Tssr138077 16 33057012 to 33057038 26 + TSS region transcription start site region 138077
Tssr138078 16 33057041 to 33057068 27 + TSS region transcription start site region 138078
Cpgi8202 16 33062055 to 33063205 1150 CpG island CpG island 8202
Tssr138079 16 33062512 to 33062549 37 + TSS region transcription start site region 138079
Lmln 16 33062521 to 33127695 65174 + protein coding gene leishmanolysin-like (metallopeptidase M8 family)
Gm22231 16 33068110 to 33068182 72 + miRNA gene predicted gene, 22231
Mir1947 16 33105361 to 33105445 84 + miRNA gene microRNA 1947
Gm38540 16 33114402 to 33124023 9621 - lncRNA gene predicted gene, 38540
Tssr140839 16 33124049 to 33124064 15 - TSS region transcription start site region 140839
Gm41447 16 33136013 to 33137622 1609 - lncRNA gene predicted gene, 41447
Gm23916 16 33139850 to 33140248 398 - ribozyme gene predicted gene, 23916
D16Mit37 16 33152537 to 33152786 249 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 37
Tssr4849 16 33169757 to 33169788 31 + TSS region transcription start site region 4849
Tssr138080 16 33174947 to 33174950 3 + TSS region transcription start site region 138080
Tssr138081 16 33179126 to 33179143 17 + TSS region transcription start site region 138081
Cpgi8203 16 33184881 to 33185906 1025 CpG island CpG island 8203
Tssr138082 16 33185045 to 33185153 108 + TSS region transcription start site region 138082
Osbpl11 16 33185071 to 33243312 58241 + protein coding gene oxysterol binding protein-like 11
Tssr138083 16 33185156 to 33185168 12 + TSS region transcription start site region 138083
Tssr140840 16 33186231 to 33186256 25 - TSS region transcription start site region 140840
Tssr140841 16 33186257 to 33186268 11 - TSS region transcription start site region 140841
Tssr138084 16 33207025 to 33207029 4 + TSS region transcription start site region 138084
Cpgi8204 16 33251223 to 33252437 1214 CpG island CpG island 8204
Tssr140842 16 33251307 to 33251319 12 - TSS region transcription start site region 140842
Tssr140843 16 33251324 to 33251376 52 - TSS region transcription start site region 140843
Tssr138085 16 33251415 to 33251456 41 + TSS region transcription start site region 138085
Snx4 16 33251456 to 33299562 48106 + protein coding gene sorting nexin 4
1700007L15Rik 16 33379854 to 33380727 873 - bidirectional promoter lncRNA gene RIKEN cDNA 1700007L15 gene
Cpgi8205 16 33380420 to 33381706 1286 CpG island CpG island 8205
Tssr140844 16 33380696 to 33380713 17 - TSS region transcription start site region 140844
Tssr140845 16 33380717 to 33380755 38 - TSS region transcription start site region 140845
Tssr138086 16 33380765 to 33380787 22 + TSS region transcription start site region 138086
Zfp148 16 33380775 to 33503903 123128 + protein coding gene zinc finger protein 148
Tssr138087 16 33380795 to 33380823 28 + TSS region transcription start site region 138087
Tssr138088 16 33380864 to 33380902 38 + TSS region transcription start site region 138088
Tssr138089 16 33381096 to 33381135 39 + TSS region transcription start site region 138089
Tssr138090 16 33381148 to 33381159 11 + TSS region transcription start site region 138090
Cpgi8206 16 33400224 to 33400566 342 CpG island CpG island 8206
Tssr138091 16 33497905 to 33497927 22 + TSS region transcription start site region 138091
Cpgi8207 16 33517193 to 33517570 377 CpG island CpG island 8207
Slc12a8 16 33517333 to 33664135 146802 + protein coding gene solute carrier family 12 (potassium/chloride transporters), member 8
Tssr138092 16 33518189 to 33518207 18 + TSS region transcription start site region 138092
Tssr138093 16 33518303 to 33518340 37 + TSS region transcription start site region 138093
Tssr138094 16 33518528 to 33518542 14 + TSS region transcription start site region 138094
Tssr138095 16 33518549 to 33518559 10 + TSS region transcription start site region 138095
Tssr138096 16 33523676 to 33523695 19 + TSS region transcription start site region 138096
Tssr138097 16 33523699 to 33523730 31 + TSS region transcription start site region 138097
Cpgi8208 16 33576529 to 33577092 563 CpG island CpG island 8208
Tssr138098 16 33594391 to 33594400 9 + TSS region transcription start site region 138098
D16Mit111 16 33664953 to 33665090 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 111
Cpgi8209 16 33684186 to 33685090 904 CpG island CpG island 8209
Heg1 16 33684430 to 33771576 87146 + protein coding gene heart development protein with EGF-like domains 1
Tssr138099 16 33684444 to 33684456 12 + TSS region transcription start site region 138099
Tssr138100 16 33684460 to 33684472 12 + TSS region transcription start site region 138100
Tssr138101 16 33684480 to 33684498 18 + TSS region transcription start site region 138101
Tssr138102 16 33684504 to 33684532 28 + TSS region transcription start site region 138102
Tssr138103 16 33684538 to 33684554 16 + TSS region transcription start site region 138103
Tssr138104 16 33700710 to 33700713 3 + TSS region transcription start site region 138104
Tssr138105 16 33720837 to 33720851 14 + TSS region transcription start site region 138105
Tssr138106 16 33725481 to 33725485 4 + TSS region transcription start site region 138106
Tssr4850 16 33725586 to 33725609 23 + TSS region transcription start site region 4850
Tssr138107 16 33726395 to 33726419 24 + TSS region transcription start site region 138107
Tssr138108 16 33726671 to 33726688 17 + TSS region transcription start site region 138108
Tssr138109 16 33726739 to 33726779 40 + TSS region transcription start site region 138109
Tssr4851 16 33746994 to 33747014 20 + TSS region transcription start site region 4851
Cpgi8210 16 33751692 to 33751914 222 CpG island CpG island 8210
Tssr138110 16 33752632 to 33752637 5 + TSS region transcription start site region 138110
Tssr4852 16 33753330 to 33753336 6 + TSS region transcription start site region 4852
Tssr138111 16 33754775 to 33754779 4 + TSS region transcription start site region 138111
Tssr138112 16 33755571 to 33755589 18 + TSS region transcription start site region 138112
D16Mit10 16 33757460 to 33757668 208 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 10