Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:32840071-33588312

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rubcn 16 32821702 to 32877587 55885 - protein coding gene RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
Tssr140826 16 32866346 to 32866361 15 - TSS region transcription start site region 140826
Tssr140827 16 32867510 to 32867517 7 - TSS region transcription start site region 140827
Cpgi8198 16 32867886 to 32868411 525 CpG island CpG island 8198
Tssr140828 16 32868271 to 32868280 9 - TSS region transcription start site region 140828
Tssr140829 16 32868286 to 32868318 32 - TSS region transcription start site region 140829
Tssr140830 16 32868325 to 32868368 43 - TSS region transcription start site region 140830
Tssr140831 16 32869958 to 32869962 4 - TSS region transcription start site region 140831
Cpgi8199 16 32877346 to 32878575 1229 CpG island CpG island 8199
Fyttd1 16 32877500 to 32908875 31375 + protein coding gene forty-two-three domain containing 1
Tssr140832 16 32877609 to 32877635 26 - TSS region transcription start site region 140832
Tssr140833 16 32877637 to 32877674 37 - TSS region transcription start site region 140833
Tssr140834 16 32877687 to 32877715 28 - TSS region transcription start site region 140834
Tssr140835 16 32877723 to 32877742 19 - TSS region transcription start site region 140835
Tssr138060 16 32877775 to 32877831 56 + TSS region transcription start site region 138060
Tssr138061 16 32877833 to 32877863 30 + TSS region transcription start site region 138061
Tssr138062 16 32877885 to 32877894 9 + TSS region transcription start site region 138062
Tssr138063 16 32878085 to 32878095 10 + TSS region transcription start site region 138063
Tssr138064 16 32878101 to 32878121 20 + TSS region transcription start site region 138064
D16Mit134 16 32896138 to 32896286 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 134
D16Mit134.2 16 32896272 to 32896388 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 134.2
Tssr138065 16 32904839 to 32904844 5 + TSS region transcription start site region 138065
Tssr138066 16 32906445 to 32906459 14 + TSS region transcription start site region 138066
Cpgi8200 16 32913892 to 32914909 1017 CpG island CpG island 8200
Tssr138067 16 32914094 to 32914138 44 + TSS region transcription start site region 138067
Lrch3 16 32914100 to 33015647 101547 + protein coding gene leucine-rich repeats and calponin homology (CH) domain containing 3
Tssr138068 16 32916290 to 32916295 5 + TSS region transcription start site region 138068
Gm6611 16 32923218 to 32924489 1271 + pseudogene predicted gene 6611
Tssr138069 16 32930093 to 32930106 13 + TSS region transcription start site region 138069
Tssr138070 16 32930941 to 32930950 9 + TSS region transcription start site region 138070
Tssr138071 16 32973895 to 32973907 12 + TSS region transcription start site region 138071
Tssr138072 16 32975791 to 32975810 19 + TSS region transcription start site region 138072
Gm17106 16 32985854 to 33108601 122747 - unclassified non-coding RNA gene predicted gene 17106
n-R5s33 16 33001903 to 33002021 118 + rRNA gene nuclear encoded rRNA 5S 33
Iqcg 16 33014270 to 33056418 42148 - protein coding gene IQ motif containing G
Tssr140836 16 33023911 to 33023948 37 - TSS region transcription start site region 140836
Tssr140837 16 33056174 to 33056211 37 - TSS region transcription start site region 140837
Cpgi8201 16 33056260 to 33057189 929 CpG island CpG island 8201
Tssr140838 16 33056389 to 33056429 40 - TSS region transcription start site region 140838
Rpl35a 16 33056453 to 33060189 3736 + protein coding gene ribosomal protein L35A
Tssr138073 16 33056456 to 33056495 39 + TSS region transcription start site region 138073
Tssr138074 16 33056499 to 33056510 11 + TSS region transcription start site region 138074
Tssr138075 16 33056515 to 33056531 16 + TSS region transcription start site region 138075
Tssr138076 16 33056544 to 33056570 26 + TSS region transcription start site region 138076
Tssr138077 16 33057012 to 33057038 26 + TSS region transcription start site region 138077
Tssr138078 16 33057041 to 33057068 27 + TSS region transcription start site region 138078
Cpgi8202 16 33062055 to 33063205 1150 CpG island CpG island 8202
Tssr138079 16 33062512 to 33062549 37 + TSS region transcription start site region 138079
Lmln 16 33062521 to 33127695 65174 + protein coding gene leishmanolysin-like (metallopeptidase M8 family)
Gm22231 16 33068110 to 33068182 72 + miRNA gene predicted gene, 22231
Mir1947 16 33105361 to 33105445 84 + miRNA gene microRNA 1947
Gm38540 16 33114402 to 33124023 9621 - lncRNA gene predicted gene, 38540
Tssr140839 16 33124049 to 33124064 15 - TSS region transcription start site region 140839
Gm41447 16 33136013 to 33137622 1609 - lncRNA gene predicted gene, 41447
Gm23916 16 33139850 to 33140248 398 - ribozyme gene predicted gene, 23916
D16Mit37 16 33152537 to 33152786 249 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 37
Tssr4849 16 33169757 to 33169788 31 + TSS region transcription start site region 4849
Tssr138080 16 33174947 to 33174950 3 + TSS region transcription start site region 138080
Tssr138081 16 33179126 to 33179143 17 + TSS region transcription start site region 138081
Cpgi8203 16 33184881 to 33185906 1025 CpG island CpG island 8203
Tssr138082 16 33185045 to 33185153 108 + TSS region transcription start site region 138082
Osbpl11 16 33185071 to 33243312 58241 + protein coding gene oxysterol binding protein-like 11
Tssr138083 16 33185156 to 33185168 12 + TSS region transcription start site region 138083
Tssr140840 16 33186231 to 33186256 25 - TSS region transcription start site region 140840
Tssr140841 16 33186257 to 33186268 11 - TSS region transcription start site region 140841
Tssr138084 16 33207025 to 33207029 4 + TSS region transcription start site region 138084
Cpgi8204 16 33251223 to 33252437 1214 CpG island CpG island 8204
Tssr140842 16 33251307 to 33251319 12 - TSS region transcription start site region 140842
Tssr140843 16 33251324 to 33251376 52 - TSS region transcription start site region 140843
Tssr138085 16 33251415 to 33251456 41 + TSS region transcription start site region 138085
Snx4 16 33251456 to 33299562 48106 + protein coding gene sorting nexin 4
1700007L15Rik 16 33379854 to 33380727 873 - bidirectional promoter lncRNA gene RIKEN cDNA 1700007L15 gene
Cpgi8205 16 33380420 to 33381706 1286 CpG island CpG island 8205
Tssr140844 16 33380696 to 33380713 17 - TSS region transcription start site region 140844
Tssr140845 16 33380717 to 33380755 38 - TSS region transcription start site region 140845
Tssr138086 16 33380765 to 33380787 22 + TSS region transcription start site region 138086
Zfp148 16 33380775 to 33503903 123128 + protein coding gene zinc finger protein 148
Tssr138087 16 33380795 to 33380823 28 + TSS region transcription start site region 138087
Tssr138088 16 33380864 to 33380902 38 + TSS region transcription start site region 138088
Tssr138089 16 33381096 to 33381135 39 + TSS region transcription start site region 138089
Tssr138090 16 33381148 to 33381159 11 + TSS region transcription start site region 138090
Cpgi8206 16 33400224 to 33400566 342 CpG island CpG island 8206
Tssr138091 16 33497905 to 33497927 22 + TSS region transcription start site region 138091
Cpgi8207 16 33517193 to 33517570 377 CpG island CpG island 8207
Slc12a8 16 33517333 to 33664135 146802 + protein coding gene solute carrier family 12 (potassium/chloride transporters), member 8
Tssr138092 16 33518189 to 33518207 18 + TSS region transcription start site region 138092
Tssr138093 16 33518303 to 33518340 37 + TSS region transcription start site region 138093
Tssr138094 16 33518528 to 33518542 14 + TSS region transcription start site region 138094
Tssr138095 16 33518549 to 33518559 10 + TSS region transcription start site region 138095
Tssr138096 16 33523676 to 33523695 19 + TSS region transcription start site region 138096
Tssr138097 16 33523699 to 33523730 31 + TSS region transcription start site region 138097
Cpgi8208 16 33576529 to 33577092 563 CpG island CpG island 8208