Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:32820775-34063903

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rubcn 16 32821702 to 32877587 55885 - protein coding gene RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
Tssr138059 16 32822087 to 32822088 1 + TSS region transcription start site region 138059
Tssr140826 16 32866346 to 32866361 15 - TSS region transcription start site region 140826
Tssr140827 16 32867510 to 32867517 7 - TSS region transcription start site region 140827
Cpgi8198 16 32867886 to 32868411 525 CpG island CpG island 8198
Tssr140828 16 32868271 to 32868280 9 - TSS region transcription start site region 140828
Tssr140829 16 32868286 to 32868318 32 - TSS region transcription start site region 140829
Tssr140830 16 32868325 to 32868368 43 - TSS region transcription start site region 140830
Tssr140831 16 32869958 to 32869962 4 - TSS region transcription start site region 140831
Cpgi8199 16 32877346 to 32878575 1229 CpG island CpG island 8199
Fyttd1 16 32877500 to 32908875 31375 + protein coding gene forty-two-three domain containing 1
Tssr140832 16 32877609 to 32877635 26 - TSS region transcription start site region 140832
Tssr140833 16 32877637 to 32877674 37 - TSS region transcription start site region 140833
Tssr140834 16 32877687 to 32877715 28 - TSS region transcription start site region 140834
Tssr140835 16 32877723 to 32877742 19 - TSS region transcription start site region 140835
Tssr138060 16 32877775 to 32877831 56 + TSS region transcription start site region 138060
Tssr138061 16 32877833 to 32877863 30 + TSS region transcription start site region 138061
Tssr138062 16 32877885 to 32877894 9 + TSS region transcription start site region 138062
Tssr138063 16 32878085 to 32878095 10 + TSS region transcription start site region 138063
Tssr138064 16 32878101 to 32878121 20 + TSS region transcription start site region 138064
D16Mit134 16 32896138 to 32896286 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 134
D16Mit134.2 16 32896272 to 32896388 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 134.2
Tssr138065 16 32904839 to 32904844 5 + TSS region transcription start site region 138065
Tssr138066 16 32906445 to 32906459 14 + TSS region transcription start site region 138066
Cpgi8200 16 32913892 to 32914909 1017 CpG island CpG island 8200
Tssr138067 16 32914094 to 32914138 44 + TSS region transcription start site region 138067
Lrch3 16 32914100 to 33015647 101547 + protein coding gene leucine-rich repeats and calponin homology (CH) domain containing 3
Tssr138068 16 32916290 to 32916295 5 + TSS region transcription start site region 138068
Gm6611 16 32923218 to 32924489 1271 + pseudogene predicted gene 6611
Tssr138069 16 32930093 to 32930106 13 + TSS region transcription start site region 138069
Tssr138070 16 32930941 to 32930950 9 + TSS region transcription start site region 138070
Tssr138071 16 32973895 to 32973907 12 + TSS region transcription start site region 138071
Tssr138072 16 32975791 to 32975810 19 + TSS region transcription start site region 138072
Gm17106 16 32985854 to 33108601 122747 - unclassified non-coding RNA gene predicted gene 17106
n-R5s33 16 33001903 to 33002021 118 + rRNA gene nuclear encoded rRNA 5S 33
Iqcg 16 33014270 to 33056418 42148 - protein coding gene IQ motif containing G
Tssr140836 16 33023911 to 33023948 37 - TSS region transcription start site region 140836
Tssr140837 16 33056174 to 33056211 37 - TSS region transcription start site region 140837
Cpgi8201 16 33056260 to 33057189 929 CpG island CpG island 8201
Tssr140838 16 33056389 to 33056429 40 - TSS region transcription start site region 140838
Rpl35a 16 33056453 to 33060189 3736 + protein coding gene ribosomal protein L35A
Tssr138073 16 33056456 to 33056495 39 + TSS region transcription start site region 138073
Tssr138074 16 33056499 to 33056510 11 + TSS region transcription start site region 138074
Tssr138075 16 33056515 to 33056531 16 + TSS region transcription start site region 138075
Tssr138076 16 33056544 to 33056570 26 + TSS region transcription start site region 138076
Tssr138077 16 33057012 to 33057038 26 + TSS region transcription start site region 138077
Tssr138078 16 33057041 to 33057068 27 + TSS region transcription start site region 138078
Cpgi8202 16 33062055 to 33063205 1150 CpG island CpG island 8202
Tssr138079 16 33062512 to 33062549 37 + TSS region transcription start site region 138079
Lmln 16 33062521 to 33127695 65174 + protein coding gene leishmanolysin-like (metallopeptidase M8 family)
Gm22231 16 33068110 to 33068182 72 + miRNA gene predicted gene, 22231
Mir1947 16 33105361 to 33105445 84 + miRNA gene microRNA 1947
Gm38540 16 33114402 to 33124023 9621 - lncRNA gene predicted gene, 38540
Tssr140839 16 33124049 to 33124064 15 - TSS region transcription start site region 140839
Gm41447 16 33136013 to 33137622 1609 - lncRNA gene predicted gene, 41447
Gm23916 16 33139850 to 33140248 398 - ribozyme gene predicted gene, 23916
D16Mit37 16 33152537 to 33152786 249 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 37
Tssr4849 16 33169757 to 33169788 31 + TSS region transcription start site region 4849
Tssr138080 16 33174947 to 33174950 3 + TSS region transcription start site region 138080
Tssr138081 16 33179126 to 33179143 17 + TSS region transcription start site region 138081
Cpgi8203 16 33184881 to 33185906 1025 CpG island CpG island 8203
Tssr138082 16 33185045 to 33185153 108 + TSS region transcription start site region 138082
Osbpl11 16 33185071 to 33243312 58241 + protein coding gene oxysterol binding protein-like 11
Tssr138083 16 33185156 to 33185168 12 + TSS region transcription start site region 138083
Tssr140840 16 33186231 to 33186256 25 - TSS region transcription start site region 140840
Tssr140841 16 33186257 to 33186268 11 - TSS region transcription start site region 140841
Tssr138084 16 33207025 to 33207029 4 + TSS region transcription start site region 138084
Cpgi8204 16 33251223 to 33252437 1214 CpG island CpG island 8204
Tssr140842 16 33251307 to 33251319 12 - TSS region transcription start site region 140842
Tssr140843 16 33251324 to 33251376 52 - TSS region transcription start site region 140843
Tssr138085 16 33251415 to 33251456 41 + TSS region transcription start site region 138085
Snx4 16 33251456 to 33299562 48106 + protein coding gene sorting nexin 4
1700007L15Rik 16 33379854 to 33380727 873 - bidirectional promoter lncRNA gene RIKEN cDNA 1700007L15 gene
Cpgi8205 16 33380420 to 33381706 1286 CpG island CpG island 8205
Tssr140844 16 33380696 to 33380713 17 - TSS region transcription start site region 140844
Tssr140845 16 33380717 to 33380755 38 - TSS region transcription start site region 140845
Tssr138086 16 33380765 to 33380787 22 + TSS region transcription start site region 138086
Zfp148 16 33380775 to 33503903 123128 + protein coding gene zinc finger protein 148
Tssr138087 16 33380795 to 33380823 28 + TSS region transcription start site region 138087
Tssr138088 16 33380864 to 33380902 38 + TSS region transcription start site region 138088
Tssr138089 16 33381096 to 33381135 39 + TSS region transcription start site region 138089
Tssr138090 16 33381148 to 33381159 11 + TSS region transcription start site region 138090
Cpgi8206 16 33400224 to 33400566 342 CpG island CpG island 8206
Tssr138091 16 33497905 to 33497927 22 + TSS region transcription start site region 138091
Cpgi8207 16 33517193 to 33517570 377 CpG island CpG island 8207
Slc12a8 16 33517333 to 33664135 146802 + protein coding gene solute carrier family 12 (potassium/chloride transporters), member 8
Tssr138092 16 33518189 to 33518207 18 + TSS region transcription start site region 138092
Tssr138093 16 33518303 to 33518340 37 + TSS region transcription start site region 138093
Tssr138094 16 33518528 to 33518542 14 + TSS region transcription start site region 138094
Tssr138095 16 33518549 to 33518559 10 + TSS region transcription start site region 138095
Tssr138096 16 33523676 to 33523695 19 + TSS region transcription start site region 138096
Tssr138097 16 33523699 to 33523730 31 + TSS region transcription start site region 138097
Cpgi8208 16 33576529 to 33577092 563 CpG island CpG island 8208
Tssr138098 16 33594391 to 33594400 9 + TSS region transcription start site region 138098
D16Mit111 16 33664953 to 33665090 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 111
Cpgi8209 16 33684186 to 33685090 904 CpG island CpG island 8209
Heg1 16 33684430 to 33771576 87146 + protein coding gene heart development protein with EGF-like domains 1
Tssr138099 16 33684444 to 33684456 12 + TSS region transcription start site region 138099
Tssr138100 16 33684460 to 33684472 12 + TSS region transcription start site region 138100
Tssr138101 16 33684480 to 33684498 18 + TSS region transcription start site region 138101
Tssr138102 16 33684504 to 33684532 28 + TSS region transcription start site region 138102
Tssr138103 16 33684538 to 33684554 16 + TSS region transcription start site region 138103
Tssr138104 16 33700710 to 33700713 3 + TSS region transcription start site region 138104
Tssr138105 16 33720837 to 33720851 14 + TSS region transcription start site region 138105
Tssr138106 16 33725481 to 33725485 4 + TSS region transcription start site region 138106
Tssr4850 16 33725586 to 33725609 23 + TSS region transcription start site region 4850
Tssr138107 16 33726395 to 33726419 24 + TSS region transcription start site region 138107
Tssr138108 16 33726671 to 33726688 17 + TSS region transcription start site region 138108
Tssr138109 16 33726739 to 33726779 40 + TSS region transcription start site region 138109
Tssr4851 16 33746994 to 33747014 20 + TSS region transcription start site region 4851
Cpgi8210 16 33751692 to 33751914 222 CpG island CpG island 8210
Tssr138110 16 33752632 to 33752637 5 + TSS region transcription start site region 138110
Tssr4852 16 33753330 to 33753336 6 + TSS region transcription start site region 4852
Tssr138111 16 33754775 to 33754779 4 + TSS region transcription start site region 138111
Tssr138112 16 33755571 to 33755589 18 + TSS region transcription start site region 138112
D16Mit10 16 33757460 to 33757668 208 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 10
Cpgi8211 16 33766773 to 33767122 349 CpG island CpG island 8211
Gm15657 16 33770430 to 33796874 26444 - antisense lncRNA gene predicted gene 15657
Gm15658 16 33785697 to 33787768 2071 - lncRNA gene predicted gene 15658
Tssr140846 16 33786968 to 33787019 51 - TSS region transcription start site region 140846
Tssr140847 16 33787104 to 33787132 28 - TSS region transcription start site region 140847
Tssr140848 16 33787166 to 33787176 10 - TSS region transcription start site region 140848
Tssr138113 16 33793978 to 33793985 7 + TSS region transcription start site region 138113
Tssr138114 16 33794008 to 33794030 22 + TSS region transcription start site region 138114
Muc13 16 33794037 to 33819929 25892 + protein coding gene mucin 13, epithelial transmembrane
Tssr138115 16 33794047 to 33794064 17 + TSS region transcription start site region 138115
Tssr138116 16 33794067 to 33794088 21 + TSS region transcription start site region 138116
Tssr138117 16 33794113 to 33794122 9 + TSS region transcription start site region 138117
Tssr4853 16 33794124 to 33794133 9 + TSS region transcription start site region 4853
Tssr138118 16 33794135 to 33794161 26 + TSS region transcription start site region 138118
Tssr138119 16 33794345 to 33794356 11 + TSS region transcription start site region 138119
Tssr138120 16 33794481 to 33794496 15 + TSS region transcription start site region 138120
Tssr140849 16 33796036 to 33796060 24 - TSS region transcription start site region 140849
Tssr138121 16 33798967 to 33798989 22 + TSS region transcription start site region 138121
Tssr138122 16 33799493 to 33799508 15 + TSS region transcription start site region 138122
Tssr138123 16 33806024 to 33806041 17 + TSS region transcription start site region 138123
Tssr4854 16 33807859 to 33807885 26 + TSS region transcription start site region 4854
Tssr138124 16 33818887 to 33818899 12 + TSS region transcription start site region 138124
Tssr140850 16 33818932 to 33818947 15 - TSS region transcription start site region 140850
Tssr4855 16 33819127 to 33819158 31 + TSS region transcription start site region 4855
Tssr138125 16 33819177 to 33819189 12 + TSS region transcription start site region 138125
Tssr138126 16 33819489 to 33819517 28 + TSS region transcription start site region 138126
Tssr138127 16 33819534 to 33819568 34 + TSS region transcription start site region 138127
Tssr138128 16 33819578 to 33819587 9 + TSS region transcription start site region 138128
Tssr138129 16 33819677 to 33819694 17 + TSS region transcription start site region 138129
Tssr138130 16 33819707 to 33819719 12 + TSS region transcription start site region 138130
Gm34967 16 33824045 to 33824280 235 - pseudogene predicted gene, 34967
Cpgi8212 16 33829188 to 33830652 1464 CpG island CpG island 8212
Tssr138131 16 33829624 to 33829667 43 + TSS region transcription start site region 138131
Itgb5 16 33829665 to 33949338 119673 + protein coding gene integrin beta 5
Tssr138132 16 33829681 to 33829706 25 + TSS region transcription start site region 138132
Tssr138133 16 33829720 to 33829768 48 + TSS region transcription start site region 138133
Tssr138134 16 33829775 to 33829780 5 + TSS region transcription start site region 138134
Tssr138135 16 33829790 to 33829802 12 + TSS region transcription start site region 138135
Tssr138136 16 33829913 to 33829953 40 + TSS region transcription start site region 138136
Tssr138137 16 33863622 to 33863653 31 + TSS region transcription start site region 138137
Tssr138138 16 33883634 to 33883681 47 + TSS region transcription start site region 138138
Tssr138139 16 33885050 to 33885093 43 + TSS region transcription start site region 138139
Tssr138140 16 33885332 to 33885336 4 + TSS region transcription start site region 138140
Tssr138141 16 33887359 to 33887363 4 + TSS region transcription start site region 138141
Tssr138142 16 33891936 to 33891964 28 + TSS region transcription start site region 138142
Tssr138143 16 33891965 to 33891990 25 + TSS region transcription start site region 138143
Umps 16 33954784 to 33967003 12219 - protein coding gene uridine monophosphate synthetase
Tssr4856 16 33959838 to 33959842 4 + TSS region transcription start site region 4856
Gm15829 16 33966239 to 33967312 1073 + antisense lncRNA gene predicted gene 15829
Cpgi8213 16 33966596 to 33967096 500 CpG island CpG island 8213
Tssr140851 16 33966995 to 33967010 15 - TSS region transcription start site region 140851
Tssr140852 16 33967032 to 33967043 11 - TSS region transcription start site region 140852
Kalrn 16 33969073 to 34573291 604218 - protein coding gene kalirin, RhoGEF kinase
Tssr138144 16 33985034 to 33985036 2 + TSS region transcription start site region 138144
Gm46566 16 34000644 to 34006637 5993 - lncRNA gene predicted gene, 46566
Gm49594 16 34006843 to 34007457 614 - pseudogene predicted gene, 49594
Tssr140853 16 34013440 to 34013444 4 - TSS region transcription start site region 140853
Tssr4857 16 34034451 to 34034457 6 - TSS region transcription start site region 4857
Tssr140854 16 34040284 to 34040296 12 - TSS region transcription start site region 140854