Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:32442483-33176206

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aod1 16 32312022 to 32704294 392272 QTL autoimmune ovarian dysgenesis 1
Pcyt1a 16 32430921 to 32475065 44144 + protein coding gene phosphate cytidylyltransferase 1, choline, alpha isoform
2210020O09Rik 16 32454598 to 32456149 1551 - antisense lncRNA gene RIKEN cDNA 2210020O09 gene
Tssr137987 16 32467180 to 32467184 4 + TSS region transcription start site region 137987
Tssr137988 16 32471496 to 32471530 34 + TSS region transcription start site region 137988
Slc51a 16 32475578 to 32487879 12301 - protein coding gene solute carrier family 51, alpha subunit
Tssr140805 16 32477627 to 32477634 7 - TSS region transcription start site region 140805
Tssr140806 16 32486168 to 32486175 7 - TSS region transcription start site region 140806
Tssr140807 16 32487152 to 32487161 9 - TSS region transcription start site region 140807
Tssr140808 16 32487168 to 32487191 23 - TSS region transcription start site region 140808
Tssr140809 16 32487195 to 32487219 24 - TSS region transcription start site region 140809
Tssr140810 16 32487225 to 32487290 65 - TSS region transcription start site region 140810
Tssr4846 16 32487596 to 32487602 6 - TSS region transcription start site region 4846
Tssr4847 16 32487615 to 32487632 17 - TSS region transcription start site region 4847
Tssr140811 16 32487643 to 32487659 16 - TSS region transcription start site region 140811
Tssr140812 16 32487667 to 32487722 55 - TSS region transcription start site region 140812
Tssr140813 16 32487809 to 32487824 15 - TSS region transcription start site region 140813
Tssr140814 16 32487873 to 32487895 22 - TSS region transcription start site region 140814
Tssr140815 16 32487897 to 32487918 21 - TSS region transcription start site region 140815
Tssr137989 16 32488093 to 32488131 38 + TSS region transcription start site region 137989
Tssr140816 16 32496149 to 32496160 11 - TSS region transcription start site region 140816
Zdhhc19 16 32496241 to 32507214 10973 + protein coding gene zinc finger, DHHC domain containing 19
Tssr137990 16 32496259 to 32496267 8 + TSS region transcription start site region 137990
Tssr137991 16 32496272 to 32496284 12 + TSS region transcription start site region 137991
Cpgi8191 16 32499540 to 32500037 497 CpG island CpG island 8191
Tssr140817 16 32520535 to 32520546 11 - TSS region transcription start site region 140817
Tssr140818 16 32520549 to 32520573 24 - TSS region transcription start site region 140818
Tssr137992 16 32520788 to 32520816 28 + TSS region transcription start site region 137992
Tssr140819 16 32522304 to 32522319 15 - TSS region transcription start site region 140819
Tssr4848 16 32539113 to 32539118 5 + TSS region transcription start site region 4848
Tssr140820 16 32550130 to 32550176 46 - TSS region transcription start site region 140820
Gm34680 16 32550211 to 32553708 3497 + lincRNA gene predicted gene, 34680
Tssr137993 16 32550235 to 32550269 34 + TSS region transcription start site region 137993
Tssr137994 16 32550298 to 32550309 11 + TSS region transcription start site region 137994
Tssr137995 16 32550317 to 32550335 18 + TSS region transcription start site region 137995
Tssr137996 16 32550337 to 32550355 18 + TSS region transcription start site region 137996
Tssr137997 16 32550729 to 32550755 26 + TSS region transcription start site region 137997
Tssr137998 16 32551816 to 32551820 4 + TSS region transcription start site region 137998
Tssr137999 16 32551854 to 32551870 16 + TSS region transcription start site region 137999
Gm5405 16 32591301 to 32591909 608 - pseudogene predicted gene 5405
Cpgi8192 16 32608632 to 32609530 898 CpG island CpG island 8192
Tssr138000 16 32608842 to 32608853 11 + TSS region transcription start site region 138000
Tfrc 16 32608920 to 32632794 23874 + protein coding gene transferrin receptor
Tssr138001 16 32608935 to 32608945 10 + TSS region transcription start site region 138001
Tssr138002 16 32608955 to 32608964 9 + TSS region transcription start site region 138002
Tssr138003 16 32608973 to 32608990 17 + TSS region transcription start site region 138003
Tssr138004 16 32611775 to 32611779 4 + TSS region transcription start site region 138004
Tssr138005 16 32613536 to 32613549 13 + TSS region transcription start site region 138005
Tssr138006 16 32621472 to 32621479 7 + TSS region transcription start site region 138006
Tssr138007 16 32621571 to 32621573 2 + TSS region transcription start site region 138007
Tssr138008 16 32628472 to 32628492 20 + TSS region transcription start site region 138008
Tssr138009 16 32630093 to 32630106 13 + TSS region transcription start site region 138009
Tssr138010 16 32630111 to 32630120 9 + TSS region transcription start site region 138010
Tssr138011 16 32630688 to 32630730 42 + TSS region transcription start site region 138011
Tssr138012 16 32630842 to 32630987 145 + TSS region transcription start site region 138012
Tssr138013 16 32631018 to 32631030 12 + TSS region transcription start site region 138013
Tssr138014 16 32631202 to 32631215 13 + TSS region transcription start site region 138014
Tssr138015 16 32631633 to 32631650 17 + TSS region transcription start site region 138015
Tssr138016 16 32641508 to 32641515 7 + TSS region transcription start site region 138016
Cpgi8193 16 32642418 to 32642593 175 CpG island CpG island 8193
Cpgi8194 16 32643701 to 32645288 1587 CpG island CpG island 8194
Tssr138017 16 32643847 to 32643916 69 + TSS region transcription start site region 138017
Tnk2 16 32644099 to 32683493 39394 + protein coding gene tyrosine kinase, non-receptor, 2
Tssr138018 16 32644110 to 32644145 35 + TSS region transcription start site region 138018
Tssr138019 16 32650524 to 32650528 4 + TSS region transcription start site region 138019
Tssr138020 16 32650771 to 32650775 4 + TSS region transcription start site region 138020
Cpgi8195 16 32658802 to 32659207 405 CpG island CpG island 8195
Tssr138021 16 32658904 to 32658949 45 + TSS region transcription start site region 138021
Tssr138022 16 32661223 to 32661245 22 + TSS region transcription start site region 138022
Tnk2os 16 32665223 to 32668197 2974 - antisense lncRNA gene tyrosine kinase, non-receptor 2, opposite strand
Tssr138023 16 32670787 to 32670788 1 + TSS region transcription start site region 138023
Tssr138024 16 32673144 to 32673188 44 + TSS region transcription start site region 138024
Cpgi8196 16 32697988 to 32698203 215 CpG island CpG island 8196
Gm34766 16 32698667 to 32704256 5589 + lncRNA gene predicted gene, 34766
Arrd3 16 32704091 to 65669666 32965575 QTL age-related retinal degeneration 3
D16Mit60 16 32704091 to 32704294 203 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 60
Pstc4 16 32704091 to 32704294 203 QTL periosteal circumference 4
D16Mit193 16 32722083 to 32722281 198 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 193
Gm9556 16 32726666 to 32727605 939 + pseudogene predicted gene 9556
Muc4 16 32735886 to 32782391 46505 + protein coding gene mucin 4
Tssr138025 16 32736263 to 32736281 18 + TSS region transcription start site region 138025
Tssr138026 16 32736286 to 32736304 18 + TSS region transcription start site region 138026
Tssr138027 16 32750332 to 32750343 11 + TSS region transcription start site region 138027
Tssr138028 16 32750400 to 32750411 11 + TSS region transcription start site region 138028
Tssr138029 16 32750477 to 32750521 44 + TSS region transcription start site region 138029
Tssr138030 16 32750633 to 32750648 15 + TSS region transcription start site region 138030
Tssr138031 16 32750651 to 32750662 11 + TSS region transcription start site region 138031
Tssr138032 16 32750688 to 32750707 19 + TSS region transcription start site region 138032
Tssr138033 16 32750811 to 32750824 13 + TSS region transcription start site region 138033
Tssr138034 16 32750880 to 32750900 20 + TSS region transcription start site region 138034
Tssr138035 16 32750914 to 32750931 17 + TSS region transcription start site region 138035
Tssr138036 16 32750945 to 32751029 84 + TSS region transcription start site region 138036
Tssr138037 16 32751035 to 32751049 14 + TSS region transcription start site region 138037
Tssr138038 16 32751058 to 32751069 11 + TSS region transcription start site region 138038
Tssr138039 16 32751142 to 32751165 23 + TSS region transcription start site region 138039
Tssr138040 16 32751225 to 32751237 12 + TSS region transcription start site region 138040
Tssr138041 16 32751337 to 32751354 17 + TSS region transcription start site region 138041
Tssr138042 16 32751363 to 32751373 10 + TSS region transcription start site region 138042
Tssr138043 16 32751378 to 32751391 13 + TSS region transcription start site region 138043
Tssr138044 16 32751431 to 32751443 12 + TSS region transcription start site region 138044
Tssr138045 16 32751469 to 32751487 18 + TSS region transcription start site region 138045
Tssr138046 16 32751561 to 32751605 44 + TSS region transcription start site region 138046
Tssr138047 16 32751688 to 32751703 15 + TSS region transcription start site region 138047
Tssr138048 16 32751713 to 32751734 21 + TSS region transcription start site region 138048
Tssr138049 16 32752224 to 32752259 35 + TSS region transcription start site region 138049
Tssr138050 16 32752592 to 32752619 27 + TSS region transcription start site region 138050
Tssr138051 16 32753474 to 32753512 38 + TSS region transcription start site region 138051
Tssr138052 16 32755375 to 32755398 23 + TSS region transcription start site region 138052
Tssr138053 16 32755634 to 32755640 6 + TSS region transcription start site region 138053
Tssr138054 16 32755746 to 32755776 30 + TSS region transcription start site region 138054
Tssr138055 16 32756107 to 32756119 12 + TSS region transcription start site region 138055
Gm34825 16 32760228 to 32775748 15520 - lncRNA gene predicted gene, 34825
Gm41446 16 32764220 to 32766105 1885 - lncRNA gene predicted gene, 41446
Tssr138056 16 32776282 to 32776286 4 + TSS region transcription start site region 138056
Tssr138057 16 32776299 to 32776313 14 + TSS region transcription start site region 138057
Tssr138058 16 32776330 to 32776335 5 + TSS region transcription start site region 138058
Muc20 16 32777419 to 32797435 20016 - protein coding gene mucin 20
Tssr140821 16 32794675 to 32794688 13 - TSS region transcription start site region 140821
Tssr140822 16 32797372 to 32797377 5 - TSS region transcription start site region 140822
Tssr140823 16 32797413 to 32797461 48 - TSS region transcription start site region 140823
Smbd1 16 32804888 to 32810446 5558 - protein coding gene somatomedin B domain containing 1
Gm26769 16 32807483 to 32811206 3723 + antisense lncRNA gene predicted gene, 26769
Tssr140824 16 32810455 to 32810466 11 - TSS region transcription start site region 140824
Tssr140825 16 32810482 to 32810494 12 - TSS region transcription start site region 140825
Cpgi8197 16 32814518 to 32814798 280 CpG island CpG island 8197
Rubcn 16 32821702 to 32877587 55885 - protein coding gene RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
Tssr138059 16 32822087 to 32822088 1 + TSS region transcription start site region 138059
Tssr140826 16 32866346 to 32866361 15 - TSS region transcription start site region 140826
Tssr140827 16 32867510 to 32867517 7 - TSS region transcription start site region 140827
Cpgi8198 16 32867886 to 32868411 525 CpG island CpG island 8198
Tssr140828 16 32868271 to 32868280 9 - TSS region transcription start site region 140828
Tssr140829 16 32868286 to 32868318 32 - TSS region transcription start site region 140829
Tssr140830 16 32868325 to 32868368 43 - TSS region transcription start site region 140830
Tssr140831 16 32869958 to 32869962 4 - TSS region transcription start site region 140831
Cpgi8199 16 32877346 to 32878575 1229 CpG island CpG island 8199
Fyttd1 16 32877500 to 32908875 31375 + protein coding gene forty-two-three domain containing 1
Tssr140832 16 32877609 to 32877635 26 - TSS region transcription start site region 140832
Tssr140833 16 32877637 to 32877674 37 - TSS region transcription start site region 140833
Tssr140834 16 32877687 to 32877715 28 - TSS region transcription start site region 140834
Tssr140835 16 32877723 to 32877742 19 - TSS region transcription start site region 140835
Tssr138060 16 32877775 to 32877831 56 + TSS region transcription start site region 138060
Tssr138061 16 32877833 to 32877863 30 + TSS region transcription start site region 138061
Tssr138062 16 32877885 to 32877894 9 + TSS region transcription start site region 138062
Tssr138063 16 32878085 to 32878095 10 + TSS region transcription start site region 138063
Tssr138064 16 32878101 to 32878121 20 + TSS region transcription start site region 138064
D16Mit134 16 32896138 to 32896286 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 134
D16Mit134.2 16 32896272 to 32896388 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 134.2
Tssr138065 16 32904839 to 32904844 5 + TSS region transcription start site region 138065
Tssr138066 16 32906445 to 32906459 14 + TSS region transcription start site region 138066
Cpgi8200 16 32913892 to 32914909 1017 CpG island CpG island 8200
Tssr138067 16 32914094 to 32914138 44 + TSS region transcription start site region 138067
Lrch3 16 32914100 to 33015647 101547 + protein coding gene leucine-rich repeats and calponin homology (CH) domain containing 3
Tssr138068 16 32916290 to 32916295 5 + TSS region transcription start site region 138068
Gm6611 16 32923218 to 32924489 1271 + pseudogene predicted gene 6611
Tssr138069 16 32930093 to 32930106 13 + TSS region transcription start site region 138069
Tssr138070 16 32930941 to 32930950 9 + TSS region transcription start site region 138070
Tssr138071 16 32973895 to 32973907 12 + TSS region transcription start site region 138071
Tssr138072 16 32975791 to 32975810 19 + TSS region transcription start site region 138072
Gm17106 16 32985854 to 33108601 122747 - unclassified non-coding RNA gene predicted gene 17106
n-R5s33 16 33001903 to 33002021 118 + rRNA gene nuclear encoded rRNA 5S 33
Iqcg 16 33014270 to 33056418 42148 - protein coding gene IQ motif containing G
Tssr140836 16 33023911 to 33023948 37 - TSS region transcription start site region 140836
Tssr140837 16 33056174 to 33056211 37 - TSS region transcription start site region 140837
Cpgi8201 16 33056260 to 33057189 929 CpG island CpG island 8201
Tssr140838 16 33056389 to 33056429 40 - TSS region transcription start site region 140838
Rpl35a 16 33056453 to 33060189 3736 + protein coding gene ribosomal protein L35A
Tssr138073 16 33056456 to 33056495 39 + TSS region transcription start site region 138073
Tssr138074 16 33056499 to 33056510 11 + TSS region transcription start site region 138074
Tssr138075 16 33056515 to 33056531 16 + TSS region transcription start site region 138075
Tssr138076 16 33056544 to 33056570 26 + TSS region transcription start site region 138076
Tssr138077 16 33057012 to 33057038 26 + TSS region transcription start site region 138077
Tssr138078 16 33057041 to 33057068 27 + TSS region transcription start site region 138078
Cpgi8202 16 33062055 to 33063205 1150 CpG island CpG island 8202
Tssr138079 16 33062512 to 33062549 37 + TSS region transcription start site region 138079
Lmln 16 33062521 to 33127695 65174 + protein coding gene leishmanolysin-like (metallopeptidase M8 family)
Gm22231 16 33068110 to 33068182 72 + miRNA gene predicted gene, 22231
Mir1947 16 33105361 to 33105445 84 + miRNA gene microRNA 1947
Gm38540 16 33114402 to 33124023 9621 - lncRNA gene predicted gene, 38540
Tssr140839 16 33124049 to 33124064 15 - TSS region transcription start site region 140839
Gm41447 16 33136013 to 33137622 1609 - lncRNA gene predicted gene, 41447
Gm23916 16 33139850 to 33140248 398 - ribozyme gene predicted gene, 23916
D16Mit37 16 33152537 to 33152786 249 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 37
Tssr4849 16 33169757 to 33169788 31 + TSS region transcription start site region 4849
Tssr138080 16 33174947 to 33174950 3 + TSS region transcription start site region 138080