Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:31317103-33177148

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412 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
nmf219 16 15913052 to 32312179 16399127 heritable phenotypic marker neuroscience mutagenesis facility, 219
D16Mit110 16 31324304 to 31324397 93 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 110
AV205837 16 31325241 to 31327154 1913 + lincRNA gene expressed sequence AV205837
Tssr137891 16 31325257 to 31325269 12 + TSS region transcription start site region 137891
Tssr137892 16 31325276 to 31325294 18 + TSS region transcription start site region 137892
Gm41443 16 31342313 to 31351259 8946 - lncRNA gene predicted gene, 41443
Gm49404 16 31344147 to 31344505 358 + pseudogene predicted gene, 49404
1700007E05Rik 16 31376506 to 31379133 2627 - pseudogene RIKEN cDNA 1700007E05 gene
Gm49736 16 31412467 to 31416491 4024 + lincRNA gene predicted gene, 49736
Tssr140755 16 31421368 to 31421378 10 - TSS region transcription start site region 140755
Tssr137893 16 31422268 to 31422278 10 + TSS region transcription start site region 137893
Tssr137894 16 31422288 to 31422308 20 + TSS region transcription start site region 137894
Bdh1 16 31422297 to 31458901 36604 + protein coding gene 3-hydroxybutyrate dehydrogenase, type 1
Tssr137895 16 31422315 to 31422347 32 + TSS region transcription start site region 137895
Gm15743 16 31427876 to 31429776 1900 - antisense lncRNA gene predicted gene 15743
Cpgi8171 16 31428474 to 31430296 1822 CpG island CpG island 8171
Tssr137896 16 31428745 to 31428755 10 + TSS region transcription start site region 137896
Tssr137897 16 31428757 to 31428762 5 + TSS region transcription start site region 137897
Tssr137898 16 31428764 to 31428837 73 + TSS region transcription start site region 137898
Tssr137899 16 31428870 to 31428881 11 + TSS region transcription start site region 137899
Tssr137900 16 31428893 to 31428902 9 + TSS region transcription start site region 137900
Tssr140756 16 31429646 to 31429691 45 - TSS region transcription start site region 140756
Tssr140757 16 31429719 to 31429741 22 - TSS region transcription start site region 140757
Tssr137901 16 31450197 to 31450210 13 + TSS region transcription start site region 137901
Tssr137902 16 31450229 to 31450238 9 + TSS region transcription start site region 137902
Tssr137903 16 31455105 to 31455117 12 + TSS region transcription start site region 137903
Tssr137904 16 31455120 to 31455134 14 + TSS region transcription start site region 137904
Tssr137905 16 31455140 to 31455160 20 + TSS region transcription start site region 137905
Tssr137906 16 31456655 to 31456680 25 + TSS region transcription start site region 137906
Gm49695 16 31469926 to 31476353 6427 + lincRNA gene predicted gene, 49695
Gm34032 16 31476082 to 31578483 102401 - lncRNA gene predicted gene, 34032
Gm46560 16 31508387 to 31511777 3390 + lincRNA gene predicted gene, 46560
Gm34256 16 31590196 to 31593220 3024 - lincRNA gene predicted gene, 34256
Gm536 16 31617868 to 31638979 21111 + lincRNA gene predicted gene 536
Cpgi8172 16 31663294 to 31664689 1395 CpG island CpG island 8172
Dlg1 16 31663443 to 31873356 209913 + protein coding gene discs large MAGUK scaffold protein 1
Tssr137907 16 31663841 to 31663912 71 + TSS region transcription start site region 137907
Tssr137908 16 31663937 to 31663980 43 + TSS region transcription start site region 137908
Tssr137909 16 31664110 to 31664118 8 + TSS region transcription start site region 137909
Tssr137910 16 31664130 to 31664178 48 + TSS region transcription start site region 137910
Tssr137911 16 31664185 to 31664188 3 + TSS region transcription start site region 137911
Gm49712 16 31679241 to 31680609 1368 + unclassified gene predicted gene, 49712
Tssr137912 16 31695504 to 31695524 20 + TSS region transcription start site region 137912
Tssr137913 16 31695539 to 31695555 16 + TSS region transcription start site region 137913
Tssr137914 16 31695883 to 31695922 39 + TSS region transcription start site region 137914
Tssr137915 16 31713445 to 31713462 17 + TSS region transcription start site region 137915
Tssr137916 16 31716096 to 31716099 3 + TSS region transcription start site region 137916
Tssr4842 16 31740456 to 31740473 17 + TSS region transcription start site region 4842
Tssr4843 16 31744399 to 31744403 4 + TSS region transcription start site region 4843
Gm24879 16 31747200 to 31747342 142 - snoRNA gene predicted gene, 24879
Tssr137917 16 31749155 to 31749161 6 + TSS region transcription start site region 137917
Tssr137918 16 31754559 to 31754581 22 + TSS region transcription start site region 137918
Tssr137919 16 31754582 to 31754595 13 + TSS region transcription start site region 137919
Tssr137920 16 31754698 to 31754742 44 + TSS region transcription start site region 137920
Tssr137921 16 31754769 to 31754784 15 + TSS region transcription start site region 137921
Tssr137922 16 31754799 to 31754822 23 + TSS region transcription start site region 137922
Tssr137923 16 31754823 to 31754832 9 + TSS region transcription start site region 137923
Gm49705 16 31760966 to 31766184 5218 + unclassified gene predicted gene, 49705
Gm17899 16 31800480 to 31801339 859 - pseudogene predicted gene, 17899
Gm49713 16 31811842 to 31812611 769 - pseudogene predicted gene, 49713
Tssr137924 16 31852334 to 31852337 3 + TSS region transcription start site region 137924
Tssr137925 16 31865484 to 31865488 4 + TSS region transcription start site region 137925
Meltf 16 31878810 to 31899020 20210 + protein coding gene melanotransferrin
Tssr137926 16 31878847 to 31878858 11 + TSS region transcription start site region 137926
Tssr137927 16 31878868 to 31878883 15 + TSS region transcription start site region 137927
Cpgi8173 16 31883457 to 31883937 480 CpG island CpG island 8173
Cpgi8174 16 31884812 to 31885033 221 CpG island CpG island 8174
Tssr137928 16 31897596 to 31897619 23 + TSS region transcription start site region 137928
Tssr137929 16 31897847 to 31897892 45 + TSS region transcription start site region 137929
Gm34476 16 31908160 to 31912500 4340 - lncRNA gene predicted gene, 34476
Gm15703 16 31924989 to 31925868 879 + pseudogene predicted gene 15703
Tssr137930 16 31927024 to 31927043 19 + TSS region transcription start site region 137930
Cpgi8175 16 31932779 to 31934190 1411 CpG island CpG island 8175
Gm49731 16 31933647 to 31935380 1733 + unclassified gene predicted gene, 49731
Pigz 16 31933851 to 31946046 12195 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Z
Tssr137931 16 31933923 to 31933964 41 + TSS region transcription start site region 137931
Tssr137932 16 31933968 to 31934006 38 + TSS region transcription start site region 137932
Cpgi8176 16 31935348 to 31935841 493 CpG island CpG island 8176
Tssr140758 16 31935365 to 31935390 25 - TSS region transcription start site region 140758
Tssr137933 16 31940825 to 31940849 24 + TSS region transcription start site region 137933
Tssr137934 16 31942492 to 31942496 4 + TSS region transcription start site region 137934
Cpgi8177 16 31944091 to 31944306 215 CpG island CpG island 8177
0610012G03Rik 16 31947050 to 31948494 1444 - protein coding gene RIKEN cDNA 0610012G03 gene
Cpgi8178 16 31947792 to 31949036 1244 CpG island CpG island 8178
Tssr140759 16 31948413 to 31948430 17 - TSS region transcription start site region 140759
Tssr140760 16 31948432 to 31948542 110 - TSS region transcription start site region 140760
Ncbp2 16 31948546 to 31958472 9926 + protein coding gene nuclear cap binding protein subunit 2
Tssr137935 16 31948572 to 31948618 46 + TSS region transcription start site region 137935
Tssr137936 16 31948624 to 31948641 17 + TSS region transcription start site region 137936
Senp5 16 31959672 to 32003287 43615 - protein coding gene SUMO/sentrin specific peptidase 5
Cpgi8179 16 31970053 to 31970256 203 CpG island CpG island 8179
Gm15696 16 31970362 to 31970806 444 - pseudogene predicted gene 15696
Cpgi8180 16 31970624 to 31970858 234 CpG island CpG island 8180
Gm26269 16 31982109 to 31982234 125 + miRNA gene predicted gene, 26269
D16Mit103 16 31984103 to 31984214 111 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 103
Rapop6 16 31984103 to 31984214 111 QTL radiation-induced apoptosis 6
Gm49733 16 31986831 to 31987123 292 - sense intronic lncRNA gene predicted gene, 49733
Gm15694 16 31987178 to 31987460 282 - pseudogene predicted gene 15694
Hmgb1-ps6 16 31991253 to 31991866 613 - pseudogene high mobility group box 1, pseudogene 6
Tssr140761 16 31996675 to 31996697 22 - TSS region transcription start site region 140761
Cpgi8181 16 32002596 to 32003490 894 CpG island CpG island 8181
Tssr140762 16 32003049 to 32003058 9 - TSS region transcription start site region 140762
Tssr140763 16 32003122 to 32003183 61 - TSS region transcription start site region 140763
Tssr137937 16 32003220 to 32003266 46 + TSS region transcription start site region 137937
Tssr140764 16 32010110 to 32010138 28 - TSS region transcription start site region 140764
Pak2 16 32016290 to 32079342 63052 - protein coding gene p21 (RAC1) activated kinase 2
Tssr140765 16 32017823 to 32017827 4 - TSS region transcription start site region 140765
Tssr140766 16 32019490 to 32019501 11 - TSS region transcription start site region 140766
Tssr140767 16 32019587 to 32019600 13 - TSS region transcription start site region 140767
Tssr140768 16 32027074 to 32027107 33 - TSS region transcription start site region 140768
Tssr140769 16 32052323 to 32052350 27 - TSS region transcription start site region 140769
Gm26419 16 32065910 to 32066042 132 + snoRNA gene predicted gene, 26419
Tssr140770 16 32073791 to 32073808 17 - TSS region transcription start site region 140770
Tssr140771 16 32078081 to 32078085 4 - TSS region transcription start site region 140771
Tssr137938 16 32078225 to 32078234 9 + TSS region transcription start site region 137938
Cpgi8182 16 32078749 to 32079673 924 CpG island CpG island 8182
Tssr140772 16 32079124 to 32079159 35 - TSS region transcription start site region 140772
Tssr140773 16 32079170 to 32079183 13 - TSS region transcription start site region 140773
Tssr140774 16 32079227 to 32079241 14 - TSS region transcription start site region 140774
Tssr140775 16 32079270 to 32079368 98 - TSS region transcription start site region 140775
Pigx 16 32084416 to 32099727 15311 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class X
Cpgi8183 16 32099031 to 32100122 1091 CpG island CpG island 8183
Tssr140776 16 32099620 to 32099635 15 - TSS region transcription start site region 140776
Tssr140777 16 32099669 to 32099696 27 - TSS region transcription start site region 140777
Tssr140778 16 32099697 to 32099752 55 - TSS region transcription start site region 140778
Tssr137939 16 32099781 to 32099857 76 + TSS region transcription start site region 137939
Cep19 16 32099802 to 32108054 8252 + protein coding gene centrosomal protein 19
Tssr137940 16 32099904 to 32099973 69 + TSS region transcription start site region 137940
Tssr137941 16 32100040 to 32100055 15 + TSS region transcription start site region 137941
Tssr137942 16 32102531 to 32102541 10 + TSS region transcription start site region 137942
Tssr137943 16 32102926 to 32102938 12 + TSS region transcription start site region 137943
Tssr137944 16 32105086 to 32105122 36 + TSS region transcription start site region 137944
Tssr137945 16 32108860 to 32108879 19 + TSS region transcription start site region 137945
Gm15729 16 32108865 to 32113743 4878 + lincRNA gene predicted gene 15729
Tssr4844 16 32109087 to 32109126 39 + TSS region transcription start site region 4844
Tssr137946 16 32114671 to 32114674 3 + TSS region transcription start site region 137946
Tssr4845 16 32118031 to 32118033 2 - TSS region transcription start site region 4845
Tssr140779 16 32130309 to 32130336 27 - TSS region transcription start site region 140779
Tssr140780 16 32136037 to 32136040 3 - TSS region transcription start site region 140780
Nrros 16 32142785 to 32165589 22804 - protein coding gene negative regulator of reactive oxygen species
Tssr137947 16 32142786 to 32142790 4 + TSS region transcription start site region 137947
Tssr137948 16 32142819 to 32142826 7 + TSS region transcription start site region 137948
Tssr140781 16 32143166 to 32143194 28 - TSS region transcription start site region 140781
Cpgi8184 16 32143247 to 32143568 321 CpG island CpG island 8184
Tssr140782 16 32144045 to 32144084 39 - TSS region transcription start site region 140782
Tssr140783 16 32144433 to 32144453 20 - TSS region transcription start site region 140783
Tssr140784 16 32144509 to 32144520 11 - TSS region transcription start site region 140784
Tssr140785 16 32145686 to 32145690 4 - TSS region transcription start site region 140785
Tssr140786 16 32163249 to 32163297 48 - TSS region transcription start site region 140786
Tssr140787 16 32163372 to 32163438 66 - TSS region transcription start site region 140787
Tssr140788 16 32163498 to 32163542 44 - TSS region transcription start site region 140788
Tssr140789 16 32164372 to 32164378 6 - TSS region transcription start site region 140789
Tssr140790 16 32164472 to 32164488 16 - TSS region transcription start site region 140790
Cpgi8185 16 32165234 to 32165569 335 CpG island CpG island 8185
Tssr140791 16 32165454 to 32165494 40 - TSS region transcription start site region 140791
Tssr140792 16 32165686 to 32165697 11 - TSS region transcription start site region 140792
Tssr140793 16 32174467 to 32174480 13 - TSS region transcription start site region 140793
Tssr140794 16 32176922 to 32176954 32 - TSS region transcription start site region 140794
Tssr137949 16 32177578 to 32177589 11 + TSS region transcription start site region 137949
Tssr137950 16 32177663 to 32177675 12 + TSS region transcription start site region 137950
Tssr140795 16 32179579 to 32179586 7 - TSS region transcription start site region 140795
Tssr140796 16 32179596 to 32179608 12 - TSS region transcription start site region 140796
Tssr140797 16 32179614 to 32179637 23 - TSS region transcription start site region 140797
Tssr140798 16 32179675 to 32179688 13 - TSS region transcription start site region 140798
Tssr137951 16 32179776 to 32179788 12 + TSS region transcription start site region 137951
Tssr137952 16 32179794 to 32179835 41 + TSS region transcription start site region 137952
Bex6 16 32179800 to 32186944 7144 + protein coding gene brain expressed family member 6
Tssr137953 16 32179838 to 32179850 12 + TSS region transcription start site region 137953
Tssr137954 16 32179854 to 32179857 3 + TSS region transcription start site region 137954
Tssr137955 16 32183932 to 32183934 2 + TSS region transcription start site region 137955
Fbxo45 16 32230112 to 32247025 16913 - protein coding gene F-box protein 45
5730596P11Rik 16 32241064 to 32242828 1764 unclassified gene RIKEN cDNA 5730596P11 gene
Gm25848 16 32243712 to 32243855 143 - snoRNA gene predicted gene, 25848
Tssr140799 16 32243852 to 32243855 3 - TSS region transcription start site region 140799
Cpgi8186 16 32246308 to 32247496 1188 CpG island CpG island 8186
Tssr140800 16 32246879 to 32246947 68 - TSS region transcription start site region 140800
Tssr140801 16 32247103 to 32247148 45 - TSS region transcription start site region 140801
Tssr140802 16 32247152 to 32247179 27 - TSS region transcription start site region 140802
Tssr137956 16 32247221 to 32247283 62 + TSS region transcription start site region 137956
Wdr53 16 32247227 to 32257083 9856 + protein coding gene WD repeat domain 53
Mir1946a 16 32267450 to 32267583 133 - miRNA gene microRNA 1946a
Tssr137957 16 32271473 to 32271523 50 + TSS region transcription start site region 137957
Tssr137958 16 32271530 to 32271544 14 + TSS region transcription start site region 137958
Tssr137959 16 32271545 to 32271559 14 + TSS region transcription start site region 137959
Smco1 16 32271609 to 32274779 3170 + protein coding gene single-pass membrane protein with coiled-coil domains 1
Cpgi8187 16 32277321 to 32278321 1000 CpG island CpG island 8187
Tssr137960 16 32277449 to 32277462 13 + TSS region transcription start site region 137960
Rnf168 16 32277459 to 32301434 23975 + protein coding gene ring finger protein 168
Tssr137961 16 32277479 to 32277524 45 + TSS region transcription start site region 137961
Tssr137962 16 32277528 to 32277566 38 + TSS region transcription start site region 137962
Tssr137963 16 32277648 to 32277651 3 + TSS region transcription start site region 137963
5830438M01Rik 16 32303126 to 32304493 1367 unclassified gene RIKEN cDNA 5830438M01 gene
Tssr137964 16 32303809 to 32303813 4 + TSS region transcription start site region 137964
D16Mit58 16 32312022 to 32312179 157 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 58
repro33 16 32312022 to 97830295 65518273 heritable phenotypic marker reproductive mutant 33, JAX Reproductive Mutagenesis Program
Aod1 16 32312022 to 32704294 392272 QTL autoimmune ovarian dysgenesis 1
Tssr137965 16 32312541 to 32312544 3 + TSS region transcription start site region 137965
Tssr137966 16 32324321 to 32324330 9 + TSS region transcription start site region 137966
Gm8387 16 32326181 to 32326695 514 - pseudogene predicted gene 8387
Cpgi8188 16 32332019 to 32333335 1316 CpG island CpG island 8188