Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:30948893-31908902

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xxylt1 16 30955347 to 31081432 126085 - protein coding gene xyloside xylosyltransferase 1
Gm15742 16 30969393 to 30973518 4125 - sense intronic lncRNA gene predicted gene 15742
Gm41440 16 31025906 to 31029491 3585 - lncRNA gene predicted gene, 41440
D16Dcr4 16 31033608 to 31033703 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 4
Tssr140724 16 31039890 to 31039918 28 - TSS region transcription start site region 140724
Tssr137884 16 31067020 to 31067037 17 + TSS region transcription start site region 137884
Cpgi8167 16 31070973 to 31071127 154 CpG island CpG island 8167
Gm46554 16 31075603 to 31080774 5171 - lncRNA gene predicted gene, 46554
Cpgi8168 16 31080537 to 31081681 1144 CpG island CpG island 8168
Tssr140725 16 31081354 to 31081359 5 - TSS region transcription start site region 140725
Tssr140726 16 31081363 to 31081439 76 - TSS region transcription start site region 140726
Acap2 16 31092412 to 31201245 108833 - protein coding gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
Tssr140727 16 31140538 to 31140541 3 - TSS region transcription start site region 140727
Tssr137885 16 31141510 to 31141514 4 + TSS region transcription start site region 137885
Tssr140728 16 31142078 to 31142104 26 - TSS region transcription start site region 140728
Tssr140729 16 31142115 to 31142129 14 - TSS region transcription start site region 140729
Tssr140730 16 31143805 to 31143808 3 - TSS region transcription start site region 140730
Tssr140731 16 31151919 to 31151923 4 - TSS region transcription start site region 140731
Gm18237 16 31157870 to 31158773 903 + pseudogene predicted gene, 18237
Tssr140732 16 31167991 to 31167995 4 - TSS region transcription start site region 140732
Tssr140733 16 31171566 to 31171569 3 - TSS region transcription start site region 140733
2810455B08Rik 16 31173656 to 31174884 1228 unclassified gene RIKEN cDNA 2810455B08 gene
Tssr140734 16 31179040 to 31179044 4 - TSS region transcription start site region 140734
Tssr140735 16 31191950 to 31191987 37 - TSS region transcription start site region 140735
Cpgi8169 16 31199741 to 31201493 1752 CpG island CpG island 8169
Tssr140736 16 31201150 to 31201243 93 - TSS region transcription start site region 140736
D16Mit166 16 31216607 to 31216754 147 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 166
Gm41442 16 31233590 to 31248313 14723 + lincRNA gene predicted gene, 41442
Tssr137886 16 31234355 to 31234367 12 + TSS region transcription start site region 137886
Tssr4838 16 31234387 to 31234403 16 + TSS region transcription start site region 4838
Tssr137887 16 31235584 to 31235593 9 + TSS region transcription start site region 137887
2310004O12Rik 16 31249248 to 31249745 497 unclassified gene RIKEN cDNA 2310004O12 gene
Ppp1r2 16 31251541 to 31275277 23736 - protein coding gene protein phosphatase 1, regulatory inhibitor subunit 2
Gm27415 16 31261505 to 31261599 94 + miRNA gene predicted gene, 27415
D16Mit229 16 31263023 to 31263144 121 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-229
Cpgi8170 16 31274686 to 31275561 875 CpG island CpG island 8170
Tssr140737 16 31275218 to 31275234 16 - TSS region transcription start site region 140737
Tssr140738 16 31275250 to 31275267 17 - TSS region transcription start site region 140738
Tssr140739 16 31275281 to 31275290 9 - TSS region transcription start site region 140739
Tssr137888 16 31275394 to 31275425 31 + TSS region transcription start site region 137888
Tssr140740 16 31275414 to 31275425 11 - TSS region transcription start site region 140740
Gm49767 16 31284424 to 31291896 7472 - lincRNA gene predicted gene, 49767
Gm49546 16 31292530 to 31292809 279 - pseudogene predicted gene, 49546
Apod 16 31296192 to 31314808 18616 - protein coding gene apolipoprotein D
Tssr137889 16 31297333 to 31297344 11 + TSS region transcription start site region 137889
Tssr137890 16 31297385 to 31297392 7 + TSS region transcription start site region 137890
Tssr140741 16 31297453 to 31297465 12 - TSS region transcription start site region 140741
Tssr4839 16 31297497 to 31297506 9 + TSS region transcription start site region 4839
Tssr140742 16 31297503 to 31297525 22 - TSS region transcription start site region 140742
Tssr4840 16 31297552 to 31297584 32 - TSS region transcription start site region 4840
Tssr140743 16 31300441 to 31300459 18 - TSS region transcription start site region 140743
Tssr140744 16 31300479 to 31300502 23 - TSS region transcription start site region 140744
Tssr4841 16 31300508 to 31300511 3 - TSS region transcription start site region 4841
Tssr140745 16 31301250 to 31301262 12 - TSS region transcription start site region 140745
Tssr140746 16 31303464 to 31303491 27 - TSS region transcription start site region 140746
Tssr140747 16 31303509 to 31303540 31 - TSS region transcription start site region 140747
Tssr140748 16 31311052 to 31311064 12 - TSS region transcription start site region 140748
Tssr140749 16 31311071 to 31311081 10 - TSS region transcription start site region 140749
Tssr140750 16 31311093 to 31311109 16 - TSS region transcription start site region 140750
Tssr140751 16 31311147 to 31311165 18 - TSS region transcription start site region 140751
Tssr140752 16 31311328 to 31311341 13 - TSS region transcription start site region 140752
Tssr140753 16 31314537 to 31314548 11 - TSS region transcription start site region 140753
Tssr140754 16 31314586 to 31314605 19 - TSS region transcription start site region 140754
D16Mit110 16 31324304 to 31324397 93 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 110
AV205837 16 31325241 to 31327154 1913 + lincRNA gene expressed sequence AV205837
Tssr137891 16 31325257 to 31325269 12 + TSS region transcription start site region 137891
Tssr137892 16 31325276 to 31325294 18 + TSS region transcription start site region 137892
Gm41443 16 31342313 to 31351259 8946 - lncRNA gene predicted gene, 41443
Gm49404 16 31344147 to 31344505 358 + pseudogene predicted gene, 49404
1700007E05Rik 16 31376506 to 31379133 2627 - pseudogene RIKEN cDNA 1700007E05 gene
Gm49736 16 31412467 to 31416491 4024 + lincRNA gene predicted gene, 49736
Tssr140755 16 31421368 to 31421378 10 - TSS region transcription start site region 140755
Tssr137893 16 31422268 to 31422278 10 + TSS region transcription start site region 137893
Tssr137894 16 31422288 to 31422308 20 + TSS region transcription start site region 137894
Bdh1 16 31422297 to 31458901 36604 + protein coding gene 3-hydroxybutyrate dehydrogenase, type 1
Tssr137895 16 31422315 to 31422347 32 + TSS region transcription start site region 137895
Gm15743 16 31427876 to 31429776 1900 - antisense lncRNA gene predicted gene 15743
Cpgi8171 16 31428474 to 31430296 1822 CpG island CpG island 8171
Tssr137896 16 31428745 to 31428755 10 + TSS region transcription start site region 137896
Tssr137897 16 31428757 to 31428762 5 + TSS region transcription start site region 137897
Tssr137898 16 31428764 to 31428837 73 + TSS region transcription start site region 137898
Tssr137899 16 31428870 to 31428881 11 + TSS region transcription start site region 137899
Tssr137900 16 31428893 to 31428902 9 + TSS region transcription start site region 137900
Tssr140756 16 31429646 to 31429691 45 - TSS region transcription start site region 140756
Tssr140757 16 31429719 to 31429741 22 - TSS region transcription start site region 140757
Tssr137901 16 31450197 to 31450210 13 + TSS region transcription start site region 137901
Tssr137902 16 31450229 to 31450238 9 + TSS region transcription start site region 137902
Tssr137903 16 31455105 to 31455117 12 + TSS region transcription start site region 137903
Tssr137904 16 31455120 to 31455134 14 + TSS region transcription start site region 137904
Tssr137905 16 31455140 to 31455160 20 + TSS region transcription start site region 137905
Tssr137906 16 31456655 to 31456680 25 + TSS region transcription start site region 137906
Gm49695 16 31469926 to 31476353 6427 + lincRNA gene predicted gene, 49695
Gm34032 16 31476082 to 31578483 102401 - lncRNA gene predicted gene, 34032
Gm46560 16 31508387 to 31511777 3390 + lincRNA gene predicted gene, 46560
Gm34256 16 31590196 to 31593220 3024 - lincRNA gene predicted gene, 34256
Gm536 16 31617868 to 31638979 21111 + lincRNA gene predicted gene 536
Cpgi8172 16 31663294 to 31664689 1395 CpG island CpG island 8172
Dlg1 16 31663443 to 31873356 209913 + protein coding gene discs large MAGUK scaffold protein 1
Tssr137907 16 31663841 to 31663912 71 + TSS region transcription start site region 137907
Tssr137908 16 31663937 to 31663980 43 + TSS region transcription start site region 137908
Tssr137909 16 31664110 to 31664118 8 + TSS region transcription start site region 137909
Tssr137910 16 31664130 to 31664178 48 + TSS region transcription start site region 137910
Tssr137911 16 31664185 to 31664188 3 + TSS region transcription start site region 137911
Gm49712 16 31679241 to 31680609 1368 + unclassified gene predicted gene, 49712
Tssr137912 16 31695504 to 31695524 20 + TSS region transcription start site region 137912
Tssr137913 16 31695539 to 31695555 16 + TSS region transcription start site region 137913
Tssr137914 16 31695883 to 31695922 39 + TSS region transcription start site region 137914
Tssr137915 16 31713445 to 31713462 17 + TSS region transcription start site region 137915
Tssr137916 16 31716096 to 31716099 3 + TSS region transcription start site region 137916
Tssr4842 16 31740456 to 31740473 17 + TSS region transcription start site region 4842
Tssr4843 16 31744399 to 31744403 4 + TSS region transcription start site region 4843
Gm24879 16 31747200 to 31747342 142 - snoRNA gene predicted gene, 24879
Tssr137917 16 31749155 to 31749161 6 + TSS region transcription start site region 137917
Tssr137918 16 31754559 to 31754581 22 + TSS region transcription start site region 137918
Tssr137919 16 31754582 to 31754595 13 + TSS region transcription start site region 137919
Tssr137920 16 31754698 to 31754742 44 + TSS region transcription start site region 137920
Tssr137921 16 31754769 to 31754784 15 + TSS region transcription start site region 137921
Tssr137922 16 31754799 to 31754822 23 + TSS region transcription start site region 137922
Tssr137923 16 31754823 to 31754832 9 + TSS region transcription start site region 137923
Gm49705 16 31760966 to 31766184 5218 + unclassified gene predicted gene, 49705
Gm17899 16 31800480 to 31801339 859 - pseudogene predicted gene, 17899
Gm49713 16 31811842 to 31812611 769 - pseudogene predicted gene, 49713
Tssr137924 16 31852334 to 31852337 3 + TSS region transcription start site region 137924
Tssr137925 16 31865484 to 31865488 4 + TSS region transcription start site region 137925
Meltf 16 31878810 to 31899020 20210 + protein coding gene melanotransferrin
Tssr137926 16 31878847 to 31878858 11 + TSS region transcription start site region 137926
Tssr137927 16 31878868 to 31878883 15 + TSS region transcription start site region 137927
Cpgi8173 16 31883457 to 31883937 480 CpG island CpG island 8173
Cpgi8174 16 31884812 to 31885033 221 CpG island CpG island 8174
Tssr137928 16 31897596 to 31897619 23 + TSS region transcription start site region 137928
Tssr137929 16 31897847 to 31897892 45 + TSS region transcription start site region 137929
Gm34476 16 31908160 to 31912500 4340 - lncRNA gene predicted gene, 34476