Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:30598331-31250629

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8165 16 30599478 to 30601863 2385 CpG island CpG island 8165
Tssr137880 16 30599717 to 30599734 17 + TSS region transcription start site region 137880
Fam43a 16 30599723 to 30602797 3074 + protein coding gene family with sequence similarity 43, member A
Tssr137881 16 30601750 to 30601763 13 + TSS region transcription start site region 137881
Cpgi8166 16 30656952 to 30657366 414 CpG island CpG island 8166
Tssr137882 16 30692258 to 30692308 50 + TSS region transcription start site region 137882
Tssr140721 16 30693946 to 30693961 15 - TSS region transcription start site region 140721
Gm49754 16 30789945 to 30793255 3310 - lincRNA gene predicted gene, 49754
Gm33502 16 30793422 to 30798813 5391 + lncRNA gene predicted gene, 33502
Gm41439 16 30804134 to 30805812 1678 - lncRNA gene predicted gene, 41439
D16Mit36 16 30805556 to 30805705 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 36
Gm26295 16 30814162 to 30814268 106 + snRNA gene predicted gene, 26295
Gm49755 16 30849456 to 30851358 1902 + lincRNA gene predicted gene, 49755
Gm49756 16 30866139 to 30870724 4585 - lincRNA gene predicted gene, 49756
Gm49757 16 30870191 to 30881649 11458 + lincRNA gene predicted gene, 49757
D16Mit1001 16 30878818 to 30878966 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1001
Gm25375 16 30889096 to 30889230 134 + snoRNA gene predicted gene, 25375
Gm46565 16 30913331 to 30935629 22298 - lincRNA gene predicted gene, 46565
Tssr140722 16 30933410 to 30933416 6 - TSS region transcription start site region 140722
Tssr140723 16 30933497 to 30933508 11 - TSS region transcription start site region 140723
C330004M20Rik 16 30935003 to 30936191 1188 unclassified gene RIKEN cDNA C330004M20 gene
Tssr137883 16 30944365 to 30944399 34 + TSS region transcription start site region 137883
Xxylt1 16 30955347 to 31081432 126085 - protein coding gene xyloside xylosyltransferase 1
Gm15742 16 30969393 to 30973518 4125 - sense intronic lncRNA gene predicted gene 15742
Gm41440 16 31025906 to 31029491 3585 - lncRNA gene predicted gene, 41440
D16Dcr4 16 31033608 to 31033703 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 4
Tssr140724 16 31039890 to 31039918 28 - TSS region transcription start site region 140724
Tssr137884 16 31067020 to 31067037 17 + TSS region transcription start site region 137884
Cpgi8167 16 31070973 to 31071127 154 CpG island CpG island 8167
Gm46554 16 31075603 to 31080774 5171 - lncRNA gene predicted gene, 46554
Cpgi8168 16 31080537 to 31081681 1144 CpG island CpG island 8168
Tssr140725 16 31081354 to 31081359 5 - TSS region transcription start site region 140725
Tssr140726 16 31081363 to 31081439 76 - TSS region transcription start site region 140726
Acap2 16 31092412 to 31201245 108833 - protein coding gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
Tssr140727 16 31140538 to 31140541 3 - TSS region transcription start site region 140727
Tssr137885 16 31141510 to 31141514 4 + TSS region transcription start site region 137885
Tssr140728 16 31142078 to 31142104 26 - TSS region transcription start site region 140728
Tssr140729 16 31142115 to 31142129 14 - TSS region transcription start site region 140729
Tssr140730 16 31143805 to 31143808 3 - TSS region transcription start site region 140730
Tssr140731 16 31151919 to 31151923 4 - TSS region transcription start site region 140731
Gm18237 16 31157870 to 31158773 903 + pseudogene predicted gene, 18237
Tssr140732 16 31167991 to 31167995 4 - TSS region transcription start site region 140732
Tssr140733 16 31171566 to 31171569 3 - TSS region transcription start site region 140733
2810455B08Rik 16 31173656 to 31174884 1228 unclassified gene RIKEN cDNA 2810455B08 gene
Tssr140734 16 31179040 to 31179044 4 - TSS region transcription start site region 140734
Tssr140735 16 31191950 to 31191987 37 - TSS region transcription start site region 140735
Cpgi8169 16 31199741 to 31201493 1752 CpG island CpG island 8169
Tssr140736 16 31201150 to 31201243 93 - TSS region transcription start site region 140736
D16Mit166 16 31216607 to 31216754 147 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 166
Gm41442 16 31233590 to 31248313 14723 + lincRNA gene predicted gene, 41442
Tssr137886 16 31234355 to 31234367 12 + TSS region transcription start site region 137886
Tssr4838 16 31234387 to 31234403 16 + TSS region transcription start site region 4838
Tssr137887 16 31235584 to 31235593 9 + TSS region transcription start site region 137887
2310004O12Rik 16 31249248 to 31249745 497 unclassified gene RIKEN cDNA 2310004O12 gene