Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:3044391-4024825

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r-ps137 16 3088680 to 3089478 798 + pseudogene vomeronasal 1 receptor, pseudogene 137
Gm49554 16 3108351 to 3108585 234 - pseudogene predicted gene, 49554
Tssr136817 16 3121447 to 3121454 7 + TSS region transcription start site region 136817
Gm4106 16 3161226 to 3162048 822 - pseudogene predicted gene 4106
Gm3711 16 3164445 to 3165024 579 - pseudogene predicted gene 3711
Gm23215 16 3249584 to 3249704 120 + miRNA gene predicted gene, 23215
Gm3749 16 3301413 to 3301992 579 + pseudogene predicted gene 3749
Gm4111 16 3304392 to 3305214 822 + pseudogene predicted gene 4111
Gm49504 16 3346350 to 3348370 2020 + lincRNA gene predicted gene, 49504
Gm22862 16 3353752 to 3353872 120 - miRNA gene predicted gene, 22862
Gm49505 16 3357957 to 3358206 249 + pseudogene predicted gene, 49505
Vmn1r-ps138 16 3377042 to 3377959 917 - pseudogene vomeronasal 1 receptor, pseudogene 138
Gm49507 16 3448993 to 3507196 58203 - lincRNA gene predicted gene, 49507
n-TLaag1 16 3449838 to 3449909 71 + tRNA gene nuclear encoded tRNA leucine 1 (anticodon AAG)
Gm35974 16 3468460 to 3481051 12591 + lincRNA gene predicted gene, 35974
Gm49508 16 3521772 to 3522099 327 + pseudogene predicted gene, 49508
Gm49509 16 3531012 to 3531291 279 + pseudogene predicted gene, 49509
Gm4116 16 3534391 to 3534825 434 + pseudogene predicted gene 4116
Gm22598 16 3535485 to 3535611 126 - snoRNA gene predicted gene, 22598
Tssr136818 16 3542191 to 3542231 40 + TSS region transcription start site region 136818
Tssr136819 16 3563826 to 3563831 5 + TSS region transcription start site region 136819
Olfr161 16 3592398 to 3593339 941 + protein coding gene olfactory receptor 161
Olfr162-ps1 16 3601932 to 3602865 933 + pseudogene olfactory receptor 162, pseudogene 1
Olfr163-ps1 16 3618582 to 3618788 206 + pseudogene olfactory receptor 163, pseudogene 1
6720473M11Rik 16 3632170 to 3633232 1062 protein coding gene RIKEN cDNA 6720473M11 gene
Tssr139719 16 3633155 to 3633191 36 - TSS region transcription start site region 139719
Tssr4775 16 3706812 to 3706818 6 - TSS region transcription start site region 4775
Mefv 16 3707218 to 3718097 10879 - protein coding gene Mediterranean fever
Tssr4776 16 3714805 to 3714834 29 - TSS region transcription start site region 4776
Tssr139720 16 3718076 to 3718089 13 - TSS region transcription start site region 139720
Tssr139721 16 3718094 to 3718097 3 - TSS region transcription start site region 139721
Tssr139722 16 3718105 to 3718150 45 - TSS region transcription start site region 139722
Tssr139723 16 3718153 to 3718164 11 - TSS region transcription start site region 139723
Tssr136820 16 3723322 to 3723324 2 + TSS region transcription start site region 136820
Tssr139724 16 3723328 to 3723335 7 - TSS region transcription start site region 139724
Tssr139725 16 3723356 to 3723384 28 - TSS region transcription start site region 139725
Tssr136821 16 3723593 to 3723595 2 + TSS region transcription start site region 136821
Tssr136822 16 3730016 to 3730030 14 + TSS region transcription start site region 136822
Tssr136823 16 3730253 to 3730302 49 + TSS region transcription start site region 136823
Tdgf1-ps1 16 3730510 to 3731022 512 + pseudogene teratocarcinoma-derived growth factor, pseudogene 1
Tssr4777 16 3743460 to 3743475 15 + TSS region transcription start site region 4777
Cpgi7899 16 3743543 to 3744723 1180 CpG island CpG island 7899
Tssr136824 16 3744089 to 3744145 56 + TSS region transcription start site region 136824
Zfp263 16 3744099 to 3750790 6691 + protein coding gene zinc finger protein 263
Tssr136825 16 3744146 to 3744157 11 + TSS region transcription start site region 136825
Tssr136826 16 3744162 to 3744180 18 + TSS region transcription start site region 136826
Tssr136827 16 3744192 to 3744206 14 + TSS region transcription start site region 136827
Tssr136828 16 3745794 to 3745849 55 + TSS region transcription start site region 136828
Gm36195 16 3758779 to 3764466 5687 + lncRNA gene predicted gene, 36195
Gm41409 16 3775742 to 3778357 2615 + lincRNA gene predicted gene, 41409
Olfr15 16 3838975 to 3839913 938 + protein coding gene olfactory receptor 15
Cpgi7900 16 3846975 to 3847604 629 CpG island CpG island 7900
Tssr136829 16 3847206 to 3847307 101 + TSS region transcription start site region 136829
Zfp174 16 3847268 to 3858880 11612 + protein coding gene zinc finger protein 174
Zfp597 16 3861544 to 3884559 23015 - protein coding gene zinc finger protein 597
Gm26675 16 3862384 to 3884505 22121 + lincRNA gene predicted gene, 26675
Cpgi7901 16 3871974 to 3873033 1059 CpG island CpG island 7901
Tssr139726 16 3872231 to 3872249 18 - TSS region transcription start site region 139726
Tssr139727 16 3872255 to 3872283 28 - TSS region transcription start site region 139727
Tssr139728 16 3872286 to 3872315 29 - TSS region transcription start site region 139728
Tssr136830 16 3872368 to 3872385 17 + TSS region transcription start site region 136830
Tssr139729 16 3872378 to 3872411 33 - TSS region transcription start site region 139729
Tssr136831 16 3872411 to 3872420 9 + TSS region transcription start site region 136831
Naa60 16 3872453 to 3904781 32328 + protein coding gene N(alpha)-acetyltransferase 60, NatF catalytic subunit
Cpgi7902 16 3884145 to 3885363 1218 CpG island CpG island 7902
Tssr139730 16 3884438 to 3884470 32 - TSS region transcription start site region 139730
Tssr139731 16 3884472 to 3884572 100 - TSS region transcription start site region 139731
Tssr136832 16 3884629 to 3884652 23 + TSS region transcription start site region 136832
Gm20695 16 3884648 to 3919517 34869 + protein coding gene predicted gene 20695
Tssr136833 16 3884657 to 3884680 23 + TSS region transcription start site region 136833
Tssr136834 16 3884687 to 3884709 22 + TSS region transcription start site region 136834
Tssr136835 16 3884718 to 3884738 20 + TSS region transcription start site region 136835
Tssr136836 16 3884740 to 3884761 21 + TSS region transcription start site region 136836
Tssr136837 16 3889704 to 3889714 10 + TSS region transcription start site region 136837
Gm41410 16 3895179 to 3897314 2135 - lncRNA gene predicted gene, 41410
Tssr139732 16 3895561 to 3895596 35 - TSS region transcription start site region 139732
1700037C18Rik 16 3905798 to 3908689 2891 - protein coding gene RIKEN cDNA 1700037C18 gene
Tssr139733 16 3907695 to 3907707 12 - TSS region transcription start site region 139733
Tssr139734 16 3907710 to 3907717 7 - TSS region transcription start site region 139734
Tssr4778 16 3907723 to 3907731 8 - TSS region transcription start site region 4778
Tssr139735 16 3907736 to 3907746 10 - TSS region transcription start site region 139735
Tssr136838 16 3907776 to 3907820 44 + TSS region transcription start site region 136838
Cpgi7903 16 3908492 to 3909322 830 CpG island CpG island 7903
Tssr139736 16 3908517 to 3908543 26 - TSS region transcription start site region 139736
Tssr139737 16 3908596 to 3908611 15 - TSS region transcription start site region 139737
Tssr139738 16 3908639 to 3908686 47 - TSS region transcription start site region 139738
Cluap1 16 3908801 to 3941147 32346 + protein coding gene clusterin associated protein 1
1700016D08Rik 16 3908825 to 3909192 367 - protein coding gene RIKEN cDNA 1700016D08 gene
Tssr136839 16 3908949 to 3909031 82 + TSS region transcription start site region 136839
Tssr136840 16 3909032 to 3909089 57 + TSS region transcription start site region 136840
Tssr136841 16 3926245 to 3926252 7 + TSS region transcription start site region 136841
Gm15538 16 3926428 to 3926740 312 + pseudogene predicted gene 15538
Gm23493 16 3927199 to 3927286 87 + miRNA gene predicted gene, 23493
Gm15539 16 3927637 to 3928166 529 + pseudogene predicted gene 15539
Gm15537 16 3927789 to 3929357 1568 - antisense lncRNA gene predicted gene 15537
Tssr139739 16 3929209 to 3929235 26 - TSS region transcription start site region 139739
Nlrc3 16 3945007 to 3976632 31625 - protein coding gene NLR family, CARD domain containing 3
Tssr139740 16 3959456 to 3959472 16 - TSS region transcription start site region 139740
Tssr139741 16 3959476 to 3959511 35 - TSS region transcription start site region 139741
Pbwg19 16 3962915 to 3963024 109 QTL postnatal body weight growth 19
D16Mit32 16 3962915 to 3963024 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 32
Tssr139742 16 3976488 to 3976512 24 - TSS region transcription start site region 139742
Tssr139743 16 3976519 to 3976535 16 - TSS region transcription start site region 139743
Tssr139744 16 3976541 to 3976567 26 - TSS region transcription start site region 139744
Tssr139745 16 3976568 to 3976575 7 - TSS region transcription start site region 139745
Tssr139746 16 3976626 to 3976636 10 - TSS region transcription start site region 139746
Slx4 16 3979105 to 4003770 24665 - protein coding gene SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
Cpgi7904 16 4003354 to 4004172 818 CpG island CpG island 7904
Tssr139747 16 4003721 to 4003735 14 - TSS region transcription start site region 139747
Tssr139748 16 4003750 to 4003828 78 - TSS region transcription start site region 139748
Tssr136842 16 4003924 to 4003946 22 + TSS region transcription start site region 136842
Tssr139749 16 4017095 to 4017098 3 - TSS region transcription start site region 139749
Rapop1 16 15913189 to 3962915 -11950274 QTL radiation-induced apoptosis 1