Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:30340556-31270705

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp13a3 16 30312423 to 30388860 76437 - protein coding gene ATPase type 13A3
Tssr140713 16 30359246 to 30359250 4 - TSS region transcription start site region 140713
Cpgi8159 16 30387806 to 30389527 1721 CpG island CpG island 8159
Tssr140714 16 30388690 to 30388701 11 - TSS region transcription start site region 140714
Tssr140715 16 30388768 to 30388802 34 - TSS region transcription start site region 140715
Tssr140716 16 30388806 to 30388858 52 - TSS region transcription start site region 140716
Tssr140717 16 30389312 to 30389348 36 - TSS region transcription start site region 140717
Tssr4836 16 30436128 to 30436129 1 - TSS region transcription start site region 4836
Gm49679 16 30452588 to 30452898 310 + pseudogene predicted gene, 49679
Cpgi8160 16 30510519 to 30511108 589 CpG island CpG island 8160
Tssr137878 16 30510669 to 30510694 25 + TSS region transcription start site region 137878
Tssr4837 16 30510697 to 30510725 28 + TSS region transcription start site region 4837
Tmem44 16 30511855 to 30550834 38979 - protein coding gene transmembrane protein 44
2810481J17Rik 16 30521828 to 30522612 784 unclassified gene RIKEN cDNA 2810481J17 gene
Cpgi8161 16 30532142 to 30532324 182 CpG island CpG island 8161
Tssr137879 16 30536066 to 30536084 18 + TSS region transcription start site region 137879
Cpgi8162 16 30549932 to 30551003 1071 CpG island CpG island 8162
Tssr140718 16 30550529 to 30550549 20 - TSS region transcription start site region 140718
Tssr140719 16 30550560 to 30550594 34 - TSS region transcription start site region 140719
Lsg1 16 30561369 to 30587613 26244 - protein coding gene large 60S subunit nuclear export GTPase 1
Cpgi8163 16 30587315 to 30587796 481 CpG island CpG island 8163
Tssr140720 16 30587537 to 30587597 60 - TSS region transcription start site region 140720
Cpgi8164 16 30597142 to 30597329 187 CpG island CpG island 8164
Cpgi8165 16 30599478 to 30601863 2385 CpG island CpG island 8165
Tssr137880 16 30599717 to 30599734 17 + TSS region transcription start site region 137880
Fam43a 16 30599723 to 30602797 3074 + protein coding gene family with sequence similarity 43, member A
Tssr137881 16 30601750 to 30601763 13 + TSS region transcription start site region 137881
Cpgi8166 16 30656952 to 30657366 414 CpG island CpG island 8166
Tssr137882 16 30692258 to 30692308 50 + TSS region transcription start site region 137882
Tssr140721 16 30693946 to 30693961 15 - TSS region transcription start site region 140721
Gm49754 16 30789945 to 30793255 3310 - lincRNA gene predicted gene, 49754
Gm33502 16 30793422 to 30798813 5391 + lncRNA gene predicted gene, 33502
Gm41439 16 30804134 to 30805812 1678 - lncRNA gene predicted gene, 41439
D16Mit36 16 30805556 to 30805705 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 36
Gm26295 16 30814162 to 30814268 106 + snRNA gene predicted gene, 26295
Gm49755 16 30849456 to 30851358 1902 + lincRNA gene predicted gene, 49755
Gm49756 16 30866139 to 30870724 4585 - lincRNA gene predicted gene, 49756
Gm49757 16 30870191 to 30881649 11458 + lincRNA gene predicted gene, 49757
D16Mit1001 16 30878818 to 30878966 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1001
Gm25375 16 30889096 to 30889230 134 + snoRNA gene predicted gene, 25375
Gm46565 16 30913331 to 30935629 22298 - lincRNA gene predicted gene, 46565
Tssr140722 16 30933410 to 30933416 6 - TSS region transcription start site region 140722
Tssr140723 16 30933497 to 30933508 11 - TSS region transcription start site region 140723
C330004M20Rik 16 30935003 to 30936191 1188 unclassified gene RIKEN cDNA C330004M20 gene
Tssr137883 16 30944365 to 30944399 34 + TSS region transcription start site region 137883
Xxylt1 16 30955347 to 31081432 126085 - protein coding gene xyloside xylosyltransferase 1
Gm15742 16 30969393 to 30973518 4125 - sense intronic lncRNA gene predicted gene 15742
Gm41440 16 31025906 to 31029491 3585 - lncRNA gene predicted gene, 41440
D16Dcr4 16 31033608 to 31033703 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 4
Tssr140724 16 31039890 to 31039918 28 - TSS region transcription start site region 140724
Tssr137884 16 31067020 to 31067037 17 + TSS region transcription start site region 137884
Cpgi8167 16 31070973 to 31071127 154 CpG island CpG island 8167
Gm46554 16 31075603 to 31080774 5171 - lncRNA gene predicted gene, 46554
Cpgi8168 16 31080537 to 31081681 1144 CpG island CpG island 8168
Tssr140725 16 31081354 to 31081359 5 - TSS region transcription start site region 140725
Tssr140726 16 31081363 to 31081439 76 - TSS region transcription start site region 140726
Acap2 16 31092412 to 31201245 108833 - protein coding gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
Tssr140727 16 31140538 to 31140541 3 - TSS region transcription start site region 140727
Tssr137885 16 31141510 to 31141514 4 + TSS region transcription start site region 137885
Tssr140728 16 31142078 to 31142104 26 - TSS region transcription start site region 140728
Tssr140729 16 31142115 to 31142129 14 - TSS region transcription start site region 140729
Tssr140730 16 31143805 to 31143808 3 - TSS region transcription start site region 140730
Tssr140731 16 31151919 to 31151923 4 - TSS region transcription start site region 140731
Gm18237 16 31157870 to 31158773 903 + pseudogene predicted gene, 18237
Tssr140732 16 31167991 to 31167995 4 - TSS region transcription start site region 140732
Tssr140733 16 31171566 to 31171569 3 - TSS region transcription start site region 140733
2810455B08Rik 16 31173656 to 31174884 1228 unclassified gene RIKEN cDNA 2810455B08 gene
Tssr140734 16 31179040 to 31179044 4 - TSS region transcription start site region 140734
Tssr140735 16 31191950 to 31191987 37 - TSS region transcription start site region 140735
Cpgi8169 16 31199741 to 31201493 1752 CpG island CpG island 8169
Tssr140736 16 31201150 to 31201243 93 - TSS region transcription start site region 140736
D16Mit166 16 31216607 to 31216754 147 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 166
Gm41442 16 31233590 to 31248313 14723 + lincRNA gene predicted gene, 41442
Tssr137886 16 31234355 to 31234367 12 + TSS region transcription start site region 137886
Tssr4838 16 31234387 to 31234403 16 + TSS region transcription start site region 4838
Tssr137887 16 31235584 to 31235593 9 + TSS region transcription start site region 137887
2310004O12Rik 16 31249248 to 31249745 497 unclassified gene RIKEN cDNA 2310004O12 gene
Ppp1r2 16 31251541 to 31275277 23736 - protein coding gene protein phosphatase 1, regulatory inhibitor subunit 2
Gm27415 16 31261505 to 31261599 94 + miRNA gene predicted gene, 27415
D16Mit229 16 31263023 to 31263144 121 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-229