Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:29498874-30188923

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp13a4 16 29395853 to 29544864 149011 - protein coding gene ATPase type 13A4
Gm18236 16 29502989 to 29504232 1243 + pseudogene predicted gene, 18236
Tssr137845 16 29533232 to 29533234 2 + TSS region transcription start site region 137845
Tssr140683 16 29541384 to 29541409 25 - TSS region transcription start site region 140683
Tssr140684 16 29541541 to 29541558 17 - TSS region transcription start site region 140684
Tssr140685 16 29544852 to 29544869 17 - TSS region transcription start site region 140685
Cpgi8144 16 29579194 to 29579733 539 CpG island CpG island 8144
Tssr137846 16 29579299 to 29579310 11 + TSS region transcription start site region 137846
Tssr137847 16 29579331 to 29579342 11 + TSS region transcription start site region 137847
Opa1 16 29579334 to 29654884 75550 + protein coding gene OPA1, mitochondrial dynamin like GTPase
Tssr137848 16 29579347 to 29579417 70 + TSS region transcription start site region 137848
Tssr137849 16 29579426 to 29579439 13 + TSS region transcription start site region 137849
Tssr137850 16 29579441 to 29579459 18 + TSS region transcription start site region 137850
D630050H08Rik 16 29641378 to 29643447 2069 unclassified gene RIKEN cDNA D630050H08 gene
Tssr137851 16 29646436 to 29646440 4 + TSS region transcription start site region 137851
Gm49636 16 29750810 to 29754312 3502 - lincRNA gene predicted gene, 49636
Tssr140686 16 29788196 to 29788200 4 - TSS region transcription start site region 140686
9530020O07Rik 16 29809388 to 29814107 4719 protein coding gene RIKEN cDNA 9530020O07 gene
Gm26834 16 29811058 to 29837814 26756 + lincRNA gene predicted gene, 26834
Gm46567 16 29813447 to 29814642 1195 + protein coding gene predicted gene, 46567
Cpgi8145 16 29813539 to 29814468 929 CpG island CpG island 8145
Gm32679 16 29829456 to 29834728 5272 - lincRNA gene predicted gene, 32679
Tssr140687 16 29834722 to 29834736 14 - TSS region transcription start site region 140687
Cpgi8146 16 29839320 to 29839657 337 CpG island CpG island 8146
Tssr137852 16 29839349 to 29839385 36 + TSS region transcription start site region 137852
Tssr137853 16 29843615 to 29843621 6 + TSS region transcription start site region 137853
Tssr137854 16 29843874 to 29843923 49 + TSS region transcription start site region 137854
Tssr140688 16 29845723 to 29845769 46 - TSS region transcription start site region 140688
Tssr137855 16 29845957 to 29845966 9 + TSS region transcription start site region 137855
Tssr140689 16 29849607 to 29849621 14 - TSS region transcription start site region 140689
Tssr140690 16 29849629 to 29849645 16 - TSS region transcription start site region 140690
Gm32740 16 29860564 to 29867537 6973 + lncRNA gene predicted gene, 32740
Gm26569 16 29907519 to 29946754 39235 - lincRNA gene predicted gene, 26569
Cpgi8147 16 29945893 to 29946367 474 CpG island CpG island 8147
Tssr140691 16 29946499 to 29946532 33 - TSS region transcription start site region 140691
Gm1968 16 29957927 to 29979124 21197 - lincRNA gene predicted gene 1968
Gm32796 16 29972735 to 29981987 9252 + lncRNA gene predicted gene, 32796
Tssr140692 16 29998241 to 29998269 28 - TSS region transcription start site region 140692
Cpgi8148 16 30008303 to 30009365 1062 CpG island CpG island 8148
Tssr137856 16 30008657 to 30008672 15 + TSS region transcription start site region 137856
4632428C04Rik 16 30008667 to 30021430 12763 + lincRNA gene RIKEN cDNA 4632428C04 gene
Tssr137857 16 30008696 to 30008703 7 + TSS region transcription start site region 137857
Tssr137858 16 30010017 to 30010020 3 + TSS region transcription start site region 137858
9030404E10Rik 16 30021842 to 30039479 17637 - lincRNA gene RIKEN cDNA 9030404E10 gene
Tssr140693 16 30039302 to 30039313 11 - TSS region transcription start site region 140693
Tssr140694 16 30039319 to 30039334 15 - TSS region transcription start site region 140694
Tssr140695 16 30039338 to 30039364 26 - TSS region transcription start site region 140695
Tssr137859 16 30055627 to 30055636 9 + TSS region transcription start site region 137859
Tssr137860 16 30055715 to 30055720 5 + TSS region transcription start site region 137860
Cpgi8149 16 30063082 to 30064800 1718 CpG island CpG island 8149
Tssr137861 16 30064164 to 30064196 32 + TSS region transcription start site region 137861
Tssr137862 16 30064351 to 30064363 12 + TSS region transcription start site region 137862
Tssr137863 16 30064437 to 30064444 7 + TSS region transcription start site region 137863
Cpgi8150 16 30065070 to 30065354 284 CpG island CpG island 8150
Tssr137864 16 30065308 to 30065312 4 + TSS region transcription start site region 137864
Tssr137865 16 30065333 to 30065351 18 + TSS region transcription start site region 137865
Hes1 16 30065357 to 30067796 2439 + protein coding gene hes family bHLH transcription factor 1
Tssr137866 16 30065623 to 30065638 15 + TSS region transcription start site region 137866
Tssr137867 16 30065642 to 30065653 11 + TSS region transcription start site region 137867
Cpgi8151 16 30066013 to 30067465 1452 CpG island CpG island 8151
Tssr137868 16 30066413 to 30066432 19 + TSS region transcription start site region 137868
Tssr137869 16 30067019 to 30067030 11 + TSS region transcription start site region 137869
Tssr137870 16 30067127 to 30067145 18 + TSS region transcription start site region 137870
Gm32998 16 30067863 to 30070438 2575 - lncRNA gene predicted gene, 32998
Cpgi8152 16 30069881 to 30070971 1090 CpG island CpG island 8152
D16Mit124.1 16 30092188 to 30092319 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 124.1
D16Mit124 16 30092343 to 30092477 134 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 124
Gm20040 16 30092482 to 30092882 400 - pseudogene predicted gene, 20040
Tssr137871 16 30093993 to 30093999 6 + TSS region transcription start site region 137871
Tssr137872 16 30139399 to 30139409 10 + TSS region transcription start site region 137872
Gm6029 16 30139459 to 30139829 370 + pseudogene predicted gene 6029
n-R5s32 16 30141843 to 30141945 102 - rRNA gene nuclear encoded rRNA 5S 32
Cpgi8153 16 30171756 to 30172048 292 CpG island CpG island 8153
Tssr140696 16 30185906 to 30185913 7 - TSS region transcription start site region 140696
Tssr140697 16 30186238 to 30186259 21 - TSS region transcription start site region 140697
Tssr137873 16 30186540 to 30186556 16 + TSS region transcription start site region 137873
Cpgi8154 16 30187908 to 30188302 394 CpG island CpG island 8154
Tssr140698 16 30187954 to 30187961 7 - TSS region transcription start site region 140698