Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:2949838-3949909

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35912 16 3009196 to 3012925 3729 + lincRNA gene predicted gene, 35912
n-TLaag2 16 3012009 to 3012080 71 - tRNA gene nuclear encoded tRNA leucine 2 (anticodon AAG)
Vmn1r-ps137 16 3088680 to 3089478 798 + pseudogene vomeronasal 1 receptor, pseudogene 137
Gm49554 16 3108351 to 3108585 234 - pseudogene predicted gene, 49554
Tssr136817 16 3121447 to 3121454 7 + TSS region transcription start site region 136817
Gm4106 16 3161226 to 3162048 822 - pseudogene predicted gene 4106
Gm3711 16 3164445 to 3165024 579 - pseudogene predicted gene 3711
Gm23215 16 3249584 to 3249704 120 + miRNA gene predicted gene, 23215
Gm3749 16 3301413 to 3301992 579 + pseudogene predicted gene 3749
Gm4111 16 3304392 to 3305214 822 + pseudogene predicted gene 4111
Gm49504 16 3346350 to 3348370 2020 + lincRNA gene predicted gene, 49504
Gm22862 16 3353752 to 3353872 120 - miRNA gene predicted gene, 22862
Gm49505 16 3357957 to 3358206 249 + pseudogene predicted gene, 49505
Vmn1r-ps138 16 3377042 to 3377959 917 - pseudogene vomeronasal 1 receptor, pseudogene 138
Gm49507 16 3448993 to 3507196 58203 - lincRNA gene predicted gene, 49507
n-TLaag1 16 3449838 to 3449909 71 + tRNA gene nuclear encoded tRNA leucine 1 (anticodon AAG)
Gm35974 16 3468460 to 3481051 12591 + lincRNA gene predicted gene, 35974
Gm49508 16 3521772 to 3522099 327 + pseudogene predicted gene, 49508
Gm49509 16 3531012 to 3531291 279 + pseudogene predicted gene, 49509
Gm4116 16 3534391 to 3534825 434 + pseudogene predicted gene 4116
Gm22598 16 3535485 to 3535611 126 - snoRNA gene predicted gene, 22598
Tssr136818 16 3542191 to 3542231 40 + TSS region transcription start site region 136818
Tssr136819 16 3563826 to 3563831 5 + TSS region transcription start site region 136819
Olfr161 16 3592398 to 3593339 941 + protein coding gene olfactory receptor 161
Olfr162-ps1 16 3601932 to 3602865 933 + pseudogene olfactory receptor 162, pseudogene 1
Olfr163-ps1 16 3618582 to 3618788 206 + pseudogene olfactory receptor 163, pseudogene 1
6720473M11Rik 16 3632170 to 3633232 1062 protein coding gene RIKEN cDNA 6720473M11 gene
Tssr139719 16 3633155 to 3633191 36 - TSS region transcription start site region 139719
Tssr4775 16 3706812 to 3706818 6 - TSS region transcription start site region 4775
Mefv 16 3707218 to 3718097 10879 - protein coding gene Mediterranean fever
Tssr4776 16 3714805 to 3714834 29 - TSS region transcription start site region 4776
Tssr139720 16 3718076 to 3718089 13 - TSS region transcription start site region 139720
Tssr139721 16 3718094 to 3718097 3 - TSS region transcription start site region 139721
Tssr139722 16 3718105 to 3718150 45 - TSS region transcription start site region 139722
Tssr139723 16 3718153 to 3718164 11 - TSS region transcription start site region 139723
Tssr136820 16 3723322 to 3723324 2 + TSS region transcription start site region 136820
Tssr139724 16 3723328 to 3723335 7 - TSS region transcription start site region 139724
Tssr139725 16 3723356 to 3723384 28 - TSS region transcription start site region 139725
Tssr136821 16 3723593 to 3723595 2 + TSS region transcription start site region 136821
Tssr136822 16 3730016 to 3730030 14 + TSS region transcription start site region 136822
Tssr136823 16 3730253 to 3730302 49 + TSS region transcription start site region 136823
Tdgf1-ps1 16 3730510 to 3731022 512 + pseudogene teratocarcinoma-derived growth factor, pseudogene 1
Tssr4777 16 3743460 to 3743475 15 + TSS region transcription start site region 4777
Cpgi7899 16 3743543 to 3744723 1180 CpG island CpG island 7899
Tssr136824 16 3744089 to 3744145 56 + TSS region transcription start site region 136824
Zfp263 16 3744099 to 3750790 6691 + protein coding gene zinc finger protein 263
Tssr136825 16 3744146 to 3744157 11 + TSS region transcription start site region 136825
Tssr136826 16 3744162 to 3744180 18 + TSS region transcription start site region 136826
Tssr136827 16 3744192 to 3744206 14 + TSS region transcription start site region 136827
Tssr136828 16 3745794 to 3745849 55 + TSS region transcription start site region 136828
Gm36195 16 3758779 to 3764466 5687 + lncRNA gene predicted gene, 36195
Gm41409 16 3775742 to 3778357 2615 + lincRNA gene predicted gene, 41409
Olfr15 16 3838975 to 3839913 938 + protein coding gene olfactory receptor 15
Cpgi7900 16 3846975 to 3847604 629 CpG island CpG island 7900
Tssr136829 16 3847206 to 3847307 101 + TSS region transcription start site region 136829
Zfp174 16 3847268 to 3858880 11612 + protein coding gene zinc finger protein 174
Zfp597 16 3861544 to 3884559 23015 - protein coding gene zinc finger protein 597
Gm26675 16 3862384 to 3884505 22121 + lincRNA gene predicted gene, 26675
Cpgi7901 16 3871974 to 3873033 1059 CpG island CpG island 7901
Tssr139726 16 3872231 to 3872249 18 - TSS region transcription start site region 139726
Tssr139727 16 3872255 to 3872283 28 - TSS region transcription start site region 139727
Tssr139728 16 3872286 to 3872315 29 - TSS region transcription start site region 139728
Tssr136830 16 3872368 to 3872385 17 + TSS region transcription start site region 136830
Tssr139729 16 3872378 to 3872411 33 - TSS region transcription start site region 139729
Tssr136831 16 3872411 to 3872420 9 + TSS region transcription start site region 136831
Naa60 16 3872453 to 3904781 32328 + protein coding gene N(alpha)-acetyltransferase 60, NatF catalytic subunit
Cpgi7902 16 3884145 to 3885363 1218 CpG island CpG island 7902
Tssr139730 16 3884438 to 3884470 32 - TSS region transcription start site region 139730
Tssr139731 16 3884472 to 3884572 100 - TSS region transcription start site region 139731
Tssr136832 16 3884629 to 3884652 23 + TSS region transcription start site region 136832
Gm20695 16 3884648 to 3919517 34869 + protein coding gene predicted gene 20695
Tssr136833 16 3884657 to 3884680 23 + TSS region transcription start site region 136833
Tssr136834 16 3884687 to 3884709 22 + TSS region transcription start site region 136834
Tssr136835 16 3884718 to 3884738 20 + TSS region transcription start site region 136835
Tssr136836 16 3884740 to 3884761 21 + TSS region transcription start site region 136836
Tssr136837 16 3889704 to 3889714 10 + TSS region transcription start site region 136837
Gm41410 16 3895179 to 3897314 2135 - lncRNA gene predicted gene, 41410
Tssr139732 16 3895561 to 3895596 35 - TSS region transcription start site region 139732
1700037C18Rik 16 3905798 to 3908689 2891 - protein coding gene RIKEN cDNA 1700037C18 gene
Tssr139733 16 3907695 to 3907707 12 - TSS region transcription start site region 139733
Tssr139734 16 3907710 to 3907717 7 - TSS region transcription start site region 139734
Tssr4778 16 3907723 to 3907731 8 - TSS region transcription start site region 4778
Tssr139735 16 3907736 to 3907746 10 - TSS region transcription start site region 139735
Tssr136838 16 3907776 to 3907820 44 + TSS region transcription start site region 136838
Cpgi7903 16 3908492 to 3909322 830 CpG island CpG island 7903
Tssr139736 16 3908517 to 3908543 26 - TSS region transcription start site region 139736
Tssr139737 16 3908596 to 3908611 15 - TSS region transcription start site region 139737
Tssr139738 16 3908639 to 3908686 47 - TSS region transcription start site region 139738
Cluap1 16 3908801 to 3941147 32346 + protein coding gene clusterin associated protein 1
1700016D08Rik 16 3908825 to 3909192 367 - protein coding gene RIKEN cDNA 1700016D08 gene
Tssr136839 16 3908949 to 3909031 82 + TSS region transcription start site region 136839
Tssr136840 16 3909032 to 3909089 57 + TSS region transcription start site region 136840
Tssr136841 16 3926245 to 3926252 7 + TSS region transcription start site region 136841
Gm15538 16 3926428 to 3926740 312 + pseudogene predicted gene 15538
Gm23493 16 3927199 to 3927286 87 + miRNA gene predicted gene, 23493
Gm15539 16 3927637 to 3928166 529 + pseudogene predicted gene 15539
Gm15537 16 3927789 to 3929357 1568 - antisense lncRNA gene predicted gene 15537
Tssr139739 16 3929209 to 3929235 26 - TSS region transcription start site region 139739
Nlrc3 16 3945007 to 3976632 31625 - protein coding gene NLR family, CARD domain containing 3