Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:28653036-29813040

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fgf12 16 28160098 to 28753068 592970 - protein coding gene fibroblast growth factor 12
D330005D02Rik 16 28666676 to 28671045 4369 unclassified gene RIKEN cDNA D330005D02 gene
Tssr140662 16 28668797 to 28668806 9 - TSS region transcription start site region 140662
Tssr140663 16 28683594 to 28683596 2 - TSS region transcription start site region 140663
D16Mit89 16 28690314 to 28690463 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 89
Tssr140664 16 28707328 to 28707330 2 - TSS region transcription start site region 140664
Tssr140665 16 28714542 to 28714546 4 - TSS region transcription start site region 140665
Cpgi8139 16 28752619 to 28752814 195 CpG island CpG island 8139
Tssr140666 16 28753192 to 28753252 60 - TSS region transcription start site region 140666
Gm20018 16 28788199 to 28794253 6054 - pseudogene predicted gene, 20018
Mb21d2 16 28826176 to 28929673 103497 - protein coding gene Mab-21 domain containing 2
Cpgi8140 16 28827864 to 28828195 331 CpG island CpG island 8140
Tssr140667 16 28902593 to 28902615 22 - TSS region transcription start site region 140667
Tssr140668 16 28911815 to 28911820 5 - TSS region transcription start site region 140668
Cpgi8141 16 28928665 to 28930328 1663 CpG island CpG island 8141
Tssr137839 16 28929038 to 28929054 16 + TSS region transcription start site region 137839
Tssr140669 16 28929658 to 28929698 40 - TSS region transcription start site region 140669
Tssr140670 16 28929826 to 28929847 21 - TSS region transcription start site region 140670
Tssr140671 16 28929950 to 28929961 11 - TSS region transcription start site region 140671
Tssr140672 16 28929982 to 28930008 26 - TSS region transcription start site region 140672
Tssr140673 16 28930013 to 28930080 67 - TSS region transcription start site region 140673
Tssr140674 16 28930156 to 28930191 35 - TSS region transcription start site region 140674
Tssr140675 16 28930573 to 28930596 23 - TSS region transcription start site region 140675
Gm8253 16 28950923 to 28951355 432 - pseudogene predicted gene 8253
Tssr140676 16 28951396 to 28951418 22 - TSS region transcription start site region 140676
Lprm5 16 29030072 to 29030171 99 QTL lymphoproliferation modifier 5
D16Mit3 16 29030072 to 29030171 99 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 3
Tssr137840 16 29150169 to 29150181 12 + TSS region transcription start site region 137840
Plaat1 16 29209695 to 29230531 20836 + protein coding gene phospholipase A and acyltransferase 1
Tssr137841 16 29209707 to 29209726 19 + TSS region transcription start site region 137841
Cpgi8142 16 29209741 to 29210519 778 CpG island CpG island 8142
Tssr137842 16 29209780 to 29209791 11 + TSS region transcription start site region 137842
Tssr137843 16 29210109 to 29210153 44 + TSS region transcription start site region 137843
Tssr137844 16 29210156 to 29210202 46 + TSS region transcription start site region 137844
Atp13a5 16 29231851 to 29378732 146881 - protein coding gene ATPase type 13A5
Tssr140677 16 29233036 to 29233040 4 - TSS region transcription start site region 140677
Cpgi8143 16 29281414 to 29281623 209 CpG island CpG island 8143
Gm15752 16 29283966 to 29284359 393 - pseudogene predicted gene 15752
Tssr140678 16 29378570 to 29378610 40 - TSS region transcription start site region 140678
Tssr140679 16 29378612 to 29378625 13 - TSS region transcription start site region 140679
Tssr140680 16 29378696 to 29378712 16 - TSS region transcription start site region 140680
Atp13a4 16 29395853 to 29544864 149011 - protein coding gene ATPase type 13A4
D16Mit57 16 29406542 to 29406653 111 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 57
Lrnx9 16 29406542 to 29406653 111 QTL learning-contextual 9
Nilac10 16 29406653 to 7319042 -22087611 QTL nicotine induced locomotor activity 10
Tssr140681 16 29441760 to 29441807 47 - TSS region transcription start site region 140681
Tssr140682 16 29490411 to 29490457 46 - TSS region transcription start site region 140682
Gm18236 16 29502989 to 29504232 1243 + pseudogene predicted gene, 18236
Tssr137845 16 29533232 to 29533234 2 + TSS region transcription start site region 137845
Tssr140683 16 29541384 to 29541409 25 - TSS region transcription start site region 140683
Tssr140684 16 29541541 to 29541558 17 - TSS region transcription start site region 140684
Tssr140685 16 29544852 to 29544869 17 - TSS region transcription start site region 140685
Cpgi8144 16 29579194 to 29579733 539 CpG island CpG island 8144
Tssr137846 16 29579299 to 29579310 11 + TSS region transcription start site region 137846
Tssr137847 16 29579331 to 29579342 11 + TSS region transcription start site region 137847
Opa1 16 29579334 to 29654884 75550 + protein coding gene OPA1, mitochondrial dynamin like GTPase
Tssr137848 16 29579347 to 29579417 70 + TSS region transcription start site region 137848
Tssr137849 16 29579426 to 29579439 13 + TSS region transcription start site region 137849
Tssr137850 16 29579441 to 29579459 18 + TSS region transcription start site region 137850
D630050H08Rik 16 29641378 to 29643447 2069 unclassified gene RIKEN cDNA D630050H08 gene
Tssr137851 16 29646436 to 29646440 4 + TSS region transcription start site region 137851
Gm49636 16 29750810 to 29754312 3502 - lincRNA gene predicted gene, 49636
Tssr140686 16 29788196 to 29788200 4 - TSS region transcription start site region 140686
9530020O07Rik 16 29809388 to 29814107 4719 protein coding gene RIKEN cDNA 9530020O07 gene
Gm26834 16 29811058 to 29837814 26756 + lincRNA gene predicted gene, 26834