Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:28338696-30418712

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fgf12 16 28160098 to 28753068 592970 - protein coding gene fibroblast growth factor 12
Tssr140650 16 28422459 to 28422462 3 - TSS region transcription start site region 140650
Cpgi8135 16 28444887 to 28445503 616 CpG island CpG island 8135
Tssr140651 16 28445364 to 28445395 31 - TSS region transcription start site region 140651
Tssr140652 16 28445683 to 28445694 11 - TSS region transcription start site region 140652
Cpgi8136 16 28445831 to 28447436 1605 CpG island CpG island 8136
Tssr140653 16 28445849 to 28445867 18 - TSS region transcription start site region 140653
Tssr140654 16 28446523 to 28446541 18 - TSS region transcription start site region 140654
Tssr140655 16 28446778 to 28446834 56 - TSS region transcription start site region 140655
Tssr140656 16 28446987 to 28447010 23 - TSS region transcription start site region 140656
Tssr140657 16 28447017 to 28447033 16 - TSS region transcription start site region 140657
Tssr140658 16 28500158 to 28500162 4 - TSS region transcription start site region 140658
Cpgi8137 16 28564154 to 28565377 1223 CpG island CpG island 8137
Tssr140659 16 28564864 to 28564886 22 - TSS region transcription start site region 140659
Gm41437 16 28565050 to 28568877 3827 + lncRNA gene predicted gene, 41437
Cpgi8138 16 28593194 to 28593436 242 CpG island CpG island 8138
Mir690 16 28599935 to 28600043 108 - miRNA gene microRNA 690
Gm46548 16 28609057 to 28634237 25180 - lncRNA gene predicted gene, 46548
4931407J08Rik 16 28630554 to 28632028 1474 unclassified gene RIKEN cDNA 4931407J08 gene
Tssr140660 16 28640789 to 28640824 35 - TSS region transcription start site region 140660
Tssr140661 16 28641057 to 28641066 9 - TSS region transcription start site region 140661
D330005D02Rik 16 28666676 to 28671045 4369 unclassified gene RIKEN cDNA D330005D02 gene
Tssr140662 16 28668797 to 28668806 9 - TSS region transcription start site region 140662
Tssr140663 16 28683594 to 28683596 2 - TSS region transcription start site region 140663
D16Mit89 16 28690314 to 28690463 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 89
Tssr140664 16 28707328 to 28707330 2 - TSS region transcription start site region 140664
Tssr140665 16 28714542 to 28714546 4 - TSS region transcription start site region 140665
Cpgi8139 16 28752619 to 28752814 195 CpG island CpG island 8139
Tssr140666 16 28753192 to 28753252 60 - TSS region transcription start site region 140666
Gm20018 16 28788199 to 28794253 6054 - pseudogene predicted gene, 20018
Mb21d2 16 28826176 to 28929673 103497 - protein coding gene Mab-21 domain containing 2
Cpgi8140 16 28827864 to 28828195 331 CpG island CpG island 8140
Tssr140667 16 28902593 to 28902615 22 - TSS region transcription start site region 140667
Tssr140668 16 28911815 to 28911820 5 - TSS region transcription start site region 140668
Cpgi8141 16 28928665 to 28930328 1663 CpG island CpG island 8141
Tssr137839 16 28929038 to 28929054 16 + TSS region transcription start site region 137839
Tssr140669 16 28929658 to 28929698 40 - TSS region transcription start site region 140669
Tssr140670 16 28929826 to 28929847 21 - TSS region transcription start site region 140670
Tssr140671 16 28929950 to 28929961 11 - TSS region transcription start site region 140671
Tssr140672 16 28929982 to 28930008 26 - TSS region transcription start site region 140672
Tssr140673 16 28930013 to 28930080 67 - TSS region transcription start site region 140673
Tssr140674 16 28930156 to 28930191 35 - TSS region transcription start site region 140674
Tssr140675 16 28930573 to 28930596 23 - TSS region transcription start site region 140675
Gm8253 16 28950923 to 28951355 432 - pseudogene predicted gene 8253
Tssr140676 16 28951396 to 28951418 22 - TSS region transcription start site region 140676
D16Mit3 16 29030072 to 29030171 99 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 3
Lprm5 16 29030072 to 29030171 99 QTL lymphoproliferation modifier 5
Tssr137840 16 29150169 to 29150181 12 + TSS region transcription start site region 137840
Plaat1 16 29209695 to 29230531 20836 + protein coding gene phospholipase A and acyltransferase 1
Tssr137841 16 29209707 to 29209726 19 + TSS region transcription start site region 137841
Cpgi8142 16 29209741 to 29210519 778 CpG island CpG island 8142
Tssr137842 16 29209780 to 29209791 11 + TSS region transcription start site region 137842
Tssr137843 16 29210109 to 29210153 44 + TSS region transcription start site region 137843
Tssr137844 16 29210156 to 29210202 46 + TSS region transcription start site region 137844
Atp13a5 16 29231851 to 29378732 146881 - protein coding gene ATPase type 13A5
Tssr140677 16 29233036 to 29233040 4 - TSS region transcription start site region 140677
Cpgi8143 16 29281414 to 29281623 209 CpG island CpG island 8143
Gm15752 16 29283966 to 29284359 393 - pseudogene predicted gene 15752
Tssr140678 16 29378570 to 29378610 40 - TSS region transcription start site region 140678
Tssr140679 16 29378612 to 29378625 13 - TSS region transcription start site region 140679
Tssr140680 16 29378696 to 29378712 16 - TSS region transcription start site region 140680
Atp13a4 16 29395853 to 29544864 149011 - protein coding gene ATPase type 13A4
D16Mit57 16 29406542 to 29406653 111 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 57
Lrnx9 16 29406542 to 29406653 111 QTL learning-contextual 9
Nilac10 16 29406653 to 7319042 -22087611 QTL nicotine induced locomotor activity 10
Tssr140681 16 29441760 to 29441807 47 - TSS region transcription start site region 140681
Tssr140682 16 29490411 to 29490457 46 - TSS region transcription start site region 140682
Gm18236 16 29502989 to 29504232 1243 + pseudogene predicted gene, 18236
Tssr137845 16 29533232 to 29533234 2 + TSS region transcription start site region 137845
Tssr140683 16 29541384 to 29541409 25 - TSS region transcription start site region 140683
Tssr140684 16 29541541 to 29541558 17 - TSS region transcription start site region 140684
Tssr140685 16 29544852 to 29544869 17 - TSS region transcription start site region 140685
Cpgi8144 16 29579194 to 29579733 539 CpG island CpG island 8144
Tssr137846 16 29579299 to 29579310 11 + TSS region transcription start site region 137846
Tssr137847 16 29579331 to 29579342 11 + TSS region transcription start site region 137847
Opa1 16 29579334 to 29654884 75550 + protein coding gene OPA1, mitochondrial dynamin like GTPase
Tssr137848 16 29579347 to 29579417 70 + TSS region transcription start site region 137848
Tssr137849 16 29579426 to 29579439 13 + TSS region transcription start site region 137849
Tssr137850 16 29579441 to 29579459 18 + TSS region transcription start site region 137850
D630050H08Rik 16 29641378 to 29643447 2069 unclassified gene RIKEN cDNA D630050H08 gene
Tssr137851 16 29646436 to 29646440 4 + TSS region transcription start site region 137851
Gm49636 16 29750810 to 29754312 3502 - lincRNA gene predicted gene, 49636
Tssr140686 16 29788196 to 29788200 4 - TSS region transcription start site region 140686
9530020O07Rik 16 29809388 to 29814107 4719 protein coding gene RIKEN cDNA 9530020O07 gene
Gm26834 16 29811058 to 29837814 26756 + lincRNA gene predicted gene, 26834
Gm46567 16 29813447 to 29814642 1195 + protein coding gene predicted gene, 46567
Cpgi8145 16 29813539 to 29814468 929 CpG island CpG island 8145
Gm32679 16 29829456 to 29834728 5272 - lincRNA gene predicted gene, 32679
Tssr140687 16 29834722 to 29834736 14 - TSS region transcription start site region 140687
Cpgi8146 16 29839320 to 29839657 337 CpG island CpG island 8146
Tssr137852 16 29839349 to 29839385 36 + TSS region transcription start site region 137852
Tssr137853 16 29843615 to 29843621 6 + TSS region transcription start site region 137853
Tssr137854 16 29843874 to 29843923 49 + TSS region transcription start site region 137854
Tssr140688 16 29845723 to 29845769 46 - TSS region transcription start site region 140688
Tssr137855 16 29845957 to 29845966 9 + TSS region transcription start site region 137855
Tssr140689 16 29849607 to 29849621 14 - TSS region transcription start site region 140689
Tssr140690 16 29849629 to 29849645 16 - TSS region transcription start site region 140690
Gm32740 16 29860564 to 29867537 6973 + lncRNA gene predicted gene, 32740
Gm26569 16 29907519 to 29946754 39235 - lincRNA gene predicted gene, 26569
Cpgi8147 16 29945893 to 29946367 474 CpG island CpG island 8147
Tssr140691 16 29946499 to 29946532 33 - TSS region transcription start site region 140691
Gm1968 16 29957927 to 29979124 21197 - lincRNA gene predicted gene 1968
Gm32796 16 29972735 to 29981987 9252 + lncRNA gene predicted gene, 32796
Tssr140692 16 29998241 to 29998269 28 - TSS region transcription start site region 140692
Cpgi8148 16 30008303 to 30009365 1062 CpG island CpG island 8148
Tssr137856 16 30008657 to 30008672 15 + TSS region transcription start site region 137856
4632428C04Rik 16 30008667 to 30021430 12763 + lincRNA gene RIKEN cDNA 4632428C04 gene
Tssr137857 16 30008696 to 30008703 7 + TSS region transcription start site region 137857
Tssr137858 16 30010017 to 30010020 3 + TSS region transcription start site region 137858
9030404E10Rik 16 30021842 to 30039479 17637 - lincRNA gene RIKEN cDNA 9030404E10 gene
Tssr140693 16 30039302 to 30039313 11 - TSS region transcription start site region 140693
Tssr140694 16 30039319 to 30039334 15 - TSS region transcription start site region 140694
Tssr140695 16 30039338 to 30039364 26 - TSS region transcription start site region 140695
Tssr137859 16 30055627 to 30055636 9 + TSS region transcription start site region 137859
Tssr137860 16 30055715 to 30055720 5 + TSS region transcription start site region 137860
Cpgi8149 16 30063082 to 30064800 1718 CpG island CpG island 8149
Tssr137861 16 30064164 to 30064196 32 + TSS region transcription start site region 137861
Tssr137862 16 30064351 to 30064363 12 + TSS region transcription start site region 137862
Tssr137863 16 30064437 to 30064444 7 + TSS region transcription start site region 137863
Cpgi8150 16 30065070 to 30065354 284 CpG island CpG island 8150
Tssr137864 16 30065308 to 30065312 4 + TSS region transcription start site region 137864
Tssr137865 16 30065333 to 30065351 18 + TSS region transcription start site region 137865
Hes1 16 30065357 to 30067796 2439 + protein coding gene hes family bHLH transcription factor 1
Tssr137866 16 30065623 to 30065638 15 + TSS region transcription start site region 137866
Tssr137867 16 30065642 to 30065653 11 + TSS region transcription start site region 137867
Cpgi8151 16 30066013 to 30067465 1452 CpG island CpG island 8151
Tssr137868 16 30066413 to 30066432 19 + TSS region transcription start site region 137868
Tssr137869 16 30067019 to 30067030 11 + TSS region transcription start site region 137869
Tssr137870 16 30067127 to 30067145 18 + TSS region transcription start site region 137870
Gm32998 16 30067863 to 30070438 2575 - lncRNA gene predicted gene, 32998
Cpgi8152 16 30069881 to 30070971 1090 CpG island CpG island 8152
D16Mit124.1 16 30092188 to 30092319 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 124.1
D16Mit124 16 30092343 to 30092477 134 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 124
Gm20040 16 30092482 to 30092882 400 - pseudogene predicted gene, 20040
Tssr137871 16 30093993 to 30093999 6 + TSS region transcription start site region 137871
Tssr137872 16 30139399 to 30139409 10 + TSS region transcription start site region 137872
Gm6029 16 30139459 to 30139829 370 + pseudogene predicted gene 6029
n-R5s32 16 30141843 to 30141945 102 - rRNA gene nuclear encoded rRNA 5S 32
Cpgi8153 16 30171756 to 30172048 292 CpG island CpG island 8153
Tssr140696 16 30185906 to 30185913 7 - TSS region transcription start site region 140696
Tssr140697 16 30186238 to 30186259 21 - TSS region transcription start site region 140697
Tssr137873 16 30186540 to 30186556 16 + TSS region transcription start site region 137873
Cpgi8154 16 30187908 to 30188302 394 CpG island CpG island 8154
Tssr140698 16 30187954 to 30187961 7 - TSS region transcription start site region 140698
Tssr137874 16 30190723 to 30190729 6 + TSS region transcription start site region 137874
1700025H01Rik 16 30195071 to 30200299 5228 + lincRNA gene RIKEN cDNA 1700025H01 gene
Tssr137875 16 30196119 to 30196124 5 + TSS region transcription start site region 137875
Tssr137876 16 30198114 to 30198137 23 + TSS region transcription start site region 137876
Gm26562 16 30200910 to 30205879 4969 - lincRNA gene predicted gene, 26562
D16Mit210 16 30213580 to 30213689 109 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 210
Cpgi8155 16 30236234 to 30236600 366 CpG island CpG island 8155
Gm33330 16 30249567 to 30253224 3657 - lncRNA gene predicted gene, 33330
Cpgi8156 16 30252004 to 30252424 420 CpG island CpG island 8156
Gm49645 16 30255152 to 30255542 390 + pseudogene predicted gene, 49645
Cpn2 16 30256378 to 30267499 11121 - protein coding gene carboxypeptidase N, polypeptide 2
Tssr140699 16 30258354 to 30258366 12 - TSS region transcription start site region 140699
Tssr137877 16 30259796 to 30259814 18 + TSS region transcription start site region 137877
Tssr140700 16 30260027 to 30260036 9 - TSS region transcription start site region 140700
Tssr140701 16 30260095 to 30260111 16 - TSS region transcription start site region 140701
Tssr140702 16 30260313 to 30260324 11 - TSS region transcription start site region 140702
Tssr140703 16 30260776 to 30260790 14 - TSS region transcription start site region 140703
Tssr140704 16 30267503 to 30267522 19 - TSS region transcription start site region 140704
Tssr140705 16 30267524 to 30267572 48 - TSS region transcription start site region 140705
Lrrc15 16 30269302 to 30283254 13952 - protein coding gene leucine rich repeat containing 15
Cpgi8157 16 30282994 to 30283466 472 CpG island CpG island 8157
Tssr140706 16 30283166 to 30283171 5 - TSS region transcription start site region 140706
Tssr140707 16 30283251 to 30283266 15 - TSS region transcription start site region 140707
Gp5 16 30307685 to 30310779 3094 - protein coding gene glycoprotein 5 (platelet)
Cpgi8158 16 30308214 to 30309961 1747 CpG island CpG island 8158
Tssr140708 16 30310773 to 30310789 16 - TSS region transcription start site region 140708
Tssr140709 16 30310794 to 30310813 19 - TSS region transcription start site region 140709
Tssr140710 16 30310824 to 30310833 9 - TSS region transcription start site region 140710
Atp13a3 16 30312423 to 30388860 76437 - protein coding gene ATPase type 13A3
Tssr140711 16 30314833 to 30314844 11 - TSS region transcription start site region 140711
Tssr140712 16 30321639 to 30321643 4 - TSS region transcription start site region 140712
Tssr140713 16 30359246 to 30359250 4 - TSS region transcription start site region 140713
Cpgi8159 16 30387806 to 30389527 1721 CpG island CpG island 8159
Tssr140714 16 30388690 to 30388701 11 - TSS region transcription start site region 140714
Tssr140715 16 30388768 to 30388802 34 - TSS region transcription start site region 140715
Tssr140716 16 30388806 to 30388858 52 - TSS region transcription start site region 140716
Tssr140717 16 30389312 to 30389348 36 - TSS region transcription start site region 140717