Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:24782142-26722151

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lpp 16 24393507 to 24992578 599071 + protein coding gene LIM domain containing preferred translocation partner in lipoma
Mir28a 16 24827855 to 24827940 85 + miRNA gene microRNA 28a
Tssr137765 16 24879374 to 24879403 29 + TSS region transcription start site region 137765
Gm22672 16 24884173 to 24884306 133 + snoRNA gene predicted gene, 22672
9430040K09Rik 16 24893362 to 24898444 5082 unclassified gene RIKEN cDNA 9430040K09 gene
Tssr140603 16 24895202 to 24895208 6 - TSS region transcription start site region 140603
Tssr137766 16 24934145 to 24934151 6 + TSS region transcription start site region 137766
Tssr137767 16 24951274 to 24951278 4 + TSS region transcription start site region 137767
Tssr137768 16 24973191 to 24973203 12 + TSS region transcription start site region 137768
Tssr137769 16 24982699 to 24982713 14 + TSS region transcription start site region 137769
Tssr137770 16 24983002 to 24983015 13 + TSS region transcription start site region 137770
Tssr137771 16 24984235 to 24984237 2 + TSS region transcription start site region 137771
Tssr137772 16 25011201 to 25011205 4 + TSS region transcription start site region 137772
Tssr137773 16 25011409 to 25011415 6 + TSS region transcription start site region 137773
Tssr137774 16 25021984 to 25021995 11 + TSS region transcription start site region 137774
Tssr137775 16 25024170 to 25024175 5 + TSS region transcription start site region 137775
Tssr137776 16 25026499 to 25026506 7 + TSS region transcription start site region 137776
Tssr140604 16 25040111 to 25040122 11 - TSS region transcription start site region 140604
Tssr137777 16 25040253 to 25040278 25 + TSS region transcription start site region 137777
Tssr137778 16 25040285 to 25040294 9 + TSS region transcription start site region 137778
Tssr140605 16 25041230 to 25041246 16 - TSS region transcription start site region 140605
Tssr137779 16 25041686 to 25041711 25 + TSS region transcription start site region 137779
Tssr137780 16 25042181 to 25042237 56 + TSS region transcription start site region 137780
Tssr137781 16 25042245 to 25042266 21 + TSS region transcription start site region 137781
Tssr137782 16 25042303 to 25042334 31 + TSS region transcription start site region 137782
Tssr137783 16 25042343 to 25042346 3 + TSS region transcription start site region 137783
Tssr137784 16 25042371 to 25042382 11 + TSS region transcription start site region 137784
Tssr137785 16 25042985 to 25042997 12 + TSS region transcription start site region 137785
Tssr137786 16 25043364 to 25043399 35 + TSS region transcription start site region 137786
Tssr140606 16 25045207 to 25045222 15 - TSS region transcription start site region 140606
Tssr140607 16 25045223 to 25045253 30 - TSS region transcription start site region 140607
Tssr137787 16 25048155 to 25048195 40 + TSS region transcription start site region 137787
Tssr137788 16 25048366 to 25048387 21 + TSS region transcription start site region 137788
Tssr140608 16 25057977 to 25057993 16 - TSS region transcription start site region 140608
Cpgi8128 16 25058934 to 25059331 397 CpG island CpG island 8128
Tssr140609 16 25059264 to 25059280 16 - TSS region transcription start site region 140609
Tssr137789 16 25059361 to 25059380 19 + TSS region transcription start site region 137789
A230028O05Rik 16 25059639 to 25069058 9419 + lincRNA gene RIKEN cDNA A230028O05 gene
Tssr140610 16 25059722 to 25059755 33 - TSS region transcription start site region 140610
Tssr137790 16 25059905 to 25059950 45 + TSS region transcription start site region 137790
Gm41435 16 25089318 to 25115446 26128 + lncRNA gene predicted gene, 41435
Gm32196 16 25143714 to 25178129 34415 - lncRNA gene predicted gene, 32196
D16Mit156 16 25150797 to 25150901 104 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 156
Tssr140611 16 25178088 to 25178099 11 - TSS region transcription start site region 140611
Tssr137791 16 25286810 to 25286826 16 + TSS region transcription start site region 137791
Tprg 16 25286817 to 25422344 135527 + protein coding gene transformation related protein 63 regulated
Tssr137792 16 25286848 to 25286874 26 + TSS region transcription start site region 137792
Tssr137793 16 25385889 to 25385903 14 + TSS region transcription start site region 137793
Ewc6 16 25407302 to 25407302 0 QTL ethanol withdrawal and consumption 6
Tssr137794 16 25410738 to 25410755 17 + TSS region transcription start site region 137794
Tssr137795 16 25423493 to 25423513 20 + TSS region transcription start site region 137795
Gm18896 16 25441853 to 25443273 1420 - pseudogene predicted gene, 18896
Tssr140612 16 25517699 to 25517702 3 - TSS region transcription start site region 140612
Tssr137796 16 25523388 to 25523393 5 + TSS region transcription start site region 137796
D16Mit123 16 25581395 to 25581483 88 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 123
Gm20007 16 25672922 to 25673594 672 + pseudogene predicted gene, 20007
Trp63 16 25683763 to 25892088 208325 + protein coding gene transformation related protein 63
Tssr137797 16 25684146 to 25684199 53 + TSS region transcription start site region 137797
Gm24928 16 25702642 to 25702748 106 - snRNA gene predicted gene, 24928
Gm27005 16 25726696 to 25727616 920 + pseudogene predicted gene, 27005
Tssr137798 16 25752097 to 25752117 20 + TSS region transcription start site region 137798
Tssr137799 16 25752142 to 25752151 9 + TSS region transcription start site region 137799
Tssr4832 16 25799643 to 25799645 2 + TSS region transcription start site region 4832
Tssr137800 16 25801907 to 25801928 21 + TSS region transcription start site region 137800
Tssr137801 16 25802043 to 25802056 13 + TSS region transcription start site region 137801
Tssr137802 16 25824933 to 25824941 8 + TSS region transcription start site region 137802
Tssr137803 16 25842558 to 25842561 3 + TSS region transcription start site region 137803
Tssr137804 16 25861189 to 25861197 8 + TSS region transcription start site region 137804
Tssr137805 16 25862344 to 25862352 8 + TSS region transcription start site region 137805
Tssr137806 16 25865776 to 25865785 9 + TSS region transcription start site region 137806
Tssr137807 16 25865815 to 25865822 7 + TSS region transcription start site region 137807
Tssr137808 16 25866089 to 25866092 3 + TSS region transcription start site region 137808
Tssr137809 16 25871282 to 25871284 2 + TSS region transcription start site region 137809
Cpgi8129 16 25889120 to 25889311 191 CpG island CpG island 8129
9230106L01Rik 16 25902386 to 25903422 1036 unclassified gene RIKEN cDNA 9230106L01 gene
Tssr137810 16 25948307 to 25948310 3 + TSS region transcription start site region 137810
Gm4524 16 25956475 to 25960342 3867 + antisense lncRNA gene predicted gene 4524
Tssr140613 16 25960030 to 25960053 23 - TSS region transcription start site region 140613
Tssr140614 16 25960247 to 25960258 11 - TSS region transcription start site region 140614
P3h2 16 25960323 to 26105784 145461 - protein coding gene prolyl 3-hydroxylase 2
Tssr140615 16 25960392 to 25960403 11 - TSS region transcription start site region 140615
Tssr140616 16 25965753 to 25965765 12 - TSS region transcription start site region 140616
AU015336 16 26031810 to 26041268 9458 - sense intronic lncRNA gene expressed sequence AU015336
Tssr137811 16 26062242 to 26062245 3 + TSS region transcription start site region 137811
Tssr140617 16 26064749 to 26064755 6 - TSS region transcription start site region 140617
2310061A09Rik 16 26069820 to 26073827 4007 unclassified non-coding RNA gene RIKEN cDNA 2310061A09 gene
Tssr140618 16 26073920 to 26073935 15 - TSS region transcription start site region 140618
Tssr140619 16 26073955 to 26073987 32 - TSS region transcription start site region 140619
Tssr140620 16 26073996 to 26074010 14 - TSS region transcription start site region 140620
Tssr140621 16 26075107 to 26075111 4 - TSS region transcription start site region 140621
Tssr140622 16 26095907 to 26095915 8 - TSS region transcription start site region 140622
Tssr140623 16 26095965 to 26095975 10 - TSS region transcription start site region 140623
Tssr140624 16 26099746 to 26099749 3 - TSS region transcription start site region 140624
Cpgi8130 16 26105016 to 26106145 1129 CpG island CpG island 8130
Tssr140625 16 26105634 to 26105654 20 - TSS region transcription start site region 140625
Tssr140626 16 26105777 to 26105855 78 - TSS region transcription start site region 140626
Tssr140627 16 26106194 to 26106202 8 - TSS region transcription start site region 140627
Tssr140628 16 26164265 to 26164275 10 - TSS region transcription start site region 140628
Gm41436 16 26251918 to 26339229 87311 + lncRNA gene predicted gene, 41436
Tssr137812 16 26251988 to 26251993 5 + TSS region transcription start site region 137812
Cldn1 16 26356645 to 26371839 15194 - protein coding gene claudin 1
Tssr140629 16 26358119 to 26358141 22 - TSS region transcription start site region 140629
Tssr140630 16 26358789 to 26358792 3 - TSS region transcription start site region 140630
Tssr140631 16 26359109 to 26359140 31 - TSS region transcription start site region 140631
Cpgi8131 16 26371364 to 26372042 678 CpG island CpG island 8131
Tssr140632 16 26371655 to 26371681 26 - TSS region transcription start site region 140632
Tssr140633 16 26371781 to 26371792 11 - TSS region transcription start site region 140633
Tssr140634 16 26371804 to 26371821 17 - TSS region transcription start site region 140634
Tssr140635 16 26371828 to 26371846 18 - TSS region transcription start site region 140635
D16Mit133 16 26400329 to 26400463 134 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 133
Tssr137813 16 26463073 to 26463087 14 + TSS region transcription start site region 137813
Cldn16 16 26463135 to 26482765 19630 + protein coding gene claudin 16
Tssr137814 16 26463146 to 26463161 15 + TSS region transcription start site region 137814
Tssr137815 16 26463465 to 26463478 13 + TSS region transcription start site region 137815
Tmem207 16 26503793 to 26526771 22978 - protein coding gene transmembrane protein 207
Tssr140636 16 26526725 to 26526738 13 - TSS region transcription start site region 140636
Tssr140637 16 26526744 to 26526774 30 - TSS region transcription start site region 140637
Tssr140638 16 26526808 to 26526819 11 - TSS region transcription start site region 140638
Tssr140639 16 26526826 to 26526837 11 - TSS region transcription start site region 140639
Cpgi8132 16 26581188 to 26582105 917 CpG island CpG island 8132
Il1rap 16 26581704 to 26730117 148413 + protein coding gene interleukin 1 receptor accessory protein
Tssr137816 16 26581725 to 26581763 38 + TSS region transcription start site region 137816
Tssr137817 16 26582340 to 26582344 4 + TSS region transcription start site region 137817
Tssr137818 16 26641076 to 26641080 4 + TSS region transcription start site region 137818
Tssr4833 16 26692722 to 26692728 6 - TSS region transcription start site region 4833
Gm20319 16 26714682 to 26755502 40820 - antisense lncRNA gene predicted gene, 20319