Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:23669906-24430637

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6640 16 23717169 to 23718754 1585 - pseudogene predicted gene 6640
D16Mit146.2 16 23725843 to 23725955 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 146.2
D16Mit146 16 23725933 to 23726053 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 146
D16Mit101 16 23736976 to 23737125 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 101
Gm49515 16 23779176 to 23780127 951 - pseudogene predicted gene, 49515
Gm31430 16 23804194 to 23846878 42684 - lncRNA gene predicted gene, 31430
Gm49516 16 23852991 to 23853966 975 + pseudogene predicted gene, 49516
Sst 16 23889581 to 23890844 1263 - protein coding gene somatostatin
Cpgi8121 16 23890519 to 23890985 466 CpG island CpG island 8121
Tssr140567 16 23890805 to 23890861 56 - TSS region transcription start site region 140567
Rtp2 16 23925548 to 23930794 5246 - protein coding gene receptor transporter protein 2
Cpgi8122 16 23927295 to 23927739 444 CpG island CpG island 8122
D16Mit102 16 23963526 to 23963654 128 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 102
Bcl6 16 23965052 to 23988612 23560 - protein coding gene B cell leukemia/lymphoma 6
Tssr140568 16 23973226 to 23973232 6 - TSS region transcription start site region 140568
Tssr140569 16 23974938 to 23974953 15 - TSS region transcription start site region 140569
Tssr140570 16 23976244 to 23976294 50 - TSS region transcription start site region 140570
Tssr140571 16 23977679 to 23977689 10 - TSS region transcription start site region 140571
Tssr140572 16 23977843 to 23977863 20 - TSS region transcription start site region 140572
Cpgi8123 16 23981080 to 23981508 428 CpG island CpG island 8123
Tssr4825 16 23981188 to 23981192 4 - TSS region transcription start site region 4825
Tssr140573 16 23981197 to 23981204 7 - TSS region transcription start site region 140573
Tssr140574 16 23981223 to 23981256 33 - TSS region transcription start site region 140574
Tssr140575 16 23981284 to 23981292 8 - TSS region transcription start site region 140575
Cpgi8124 16 23984176 to 23985156 980 CpG island CpG island 8124
2900064B18Rik 16 23985595 to 23986728 1133 unclassified gene RIKEN cDNA 2900064B18 gene
Tssr137733 16 23986466 to 23986485 19 + TSS region transcription start site region 137733
Cpgi8125 16 23986991 to 23987422 431 CpG island CpG island 8125
Cpgi8126 16 23987462 to 23989158 1696 CpG island CpG island 8126
Tssr140576 16 23988233 to 23988235 2 - TSS region transcription start site region 140576
Gm37419 16 23988482 to 23988595 113 + protein coding gene predicted gene, 37419
Tssr140577 16 23988537 to 23988544 7 - TSS region transcription start site region 140577
Tssr140578 16 23988563 to 23988574 11 - TSS region transcription start site region 140578
Tssr140579 16 23988600 to 23988607 7 - TSS region transcription start site region 140579
Tssr140580 16 23988625 to 23988641 16 - TSS region transcription start site region 140580
Tssr137734 16 23988957 to 23988986 29 + TSS region transcription start site region 137734
Tssr137735 16 23988994 to 23989005 11 + TSS region transcription start site region 137735
Gm31527 16 23989011 to 23999436 10425 + lncRNA gene predicted gene, 31527
Tssr137736 16 24012744 to 24012750 6 + TSS region transcription start site region 137736
Tssr140581 16 24013220 to 24013226 6 - TSS region transcription start site region 140581
Tssr140582 16 24013374 to 24013381 7 - TSS region transcription start site region 140582
Tssr140583 16 24013399 to 24013409 10 - TSS region transcription start site region 140583
Tssr4826 16 24025732 to 24025747 15 + TSS region transcription start site region 4826
Gm49518 16 24039906 to 24060637 20731 + lincRNA gene predicted gene, 49518
Gm46545 16 24076938 to 24082795 5857 - lincRNA gene predicted gene, 46545
Gm31583 16 24085083 to 24090089 5006 - lincRNA gene predicted gene, 31583
Tssr140584 16 24090032 to 24090046 14 - TSS region transcription start site region 140584
Tssr140585 16 24090059 to 24090100 41 - TSS region transcription start site region 140585
Tssr140586 16 24090106 to 24090118 12 - TSS region transcription start site region 140586
Tssr4827 16 24090171 to 24090180 9 - TSS region transcription start site region 4827
Tssr137737 16 24096355 to 24096363 8 + TSS region transcription start site region 137737
Gm32126 16 24158149 to 24159559 1410 - sense intronic lncRNA gene predicted gene, 32126
Tssr137738 16 24179425 to 24179427 2 + TSS region transcription start site region 137738
Gm31814 16 24186057 to 24263166 77109 - sense intronic lncRNA gene predicted gene, 31814
Tssr140587 16 24193030 to 24193035 5 - TSS region transcription start site region 140587
Tssr140588 16 24193387 to 24193404 17 - TSS region transcription start site region 140588
Tssr4828 16 24193421 to 24193435 14 - TSS region transcription start site region 4828
Tssr140589 16 24193627 to 24193650 23 - TSS region transcription start site region 140589
Tssr4829 16 24193857 to 24193874 17 + TSS region transcription start site region 4829
Tssr140590 16 24199893 to 24199926 33 - TSS region transcription start site region 140590
Tssr140591 16 24216493 to 24216531 38 - TSS region transcription start site region 140591
Gm38456 16 24271143 to 24296233 25090 - lncRNA gene predicted gene, 38456
Tssr140592 16 24296173 to 24296186 13 - TSS region transcription start site region 140592
Tssr140593 16 24296200 to 24296211 11 - TSS region transcription start site region 140593
Tssr140594 16 24296221 to 24296231 10 - TSS region transcription start site region 140594
Tssr137739 16 24327532 to 24327538 6 + TSS region transcription start site region 137739
Gm41434 16 24369790 to 24370232 442 - pseudogene predicted gene, 41434
Gm4521 16 24379609 to 24380545 936 - pseudogene predicted gene 4521
Tssr140595 16 24380305 to 24380326 21 - TSS region transcription start site region 140595
Tssr140596 16 24382343 to 24382352 9 - TSS region transcription start site region 140596
Tssr140597 16 24382387 to 24382391 4 - TSS region transcription start site region 140597
Lppos 16 24392556 to 24393655 1099 - lincRNA gene LIM domain containing preferred translocation partner in lipoma, opposite strand
Cpgi8127 16 24392886 to 24394355 1469 CpG island CpG island 8127
Tssr137740 16 24393379 to 24393428 49 + TSS region transcription start site region 137740
Tssr140598 16 24393417 to 24393459 42 - TSS region transcription start site region 140598
Tssr137741 16 24393464 to 24393528 64 + TSS region transcription start site region 137741
Lpp 16 24393507 to 24992578 599071 + protein coding gene LIM domain containing preferred translocation partner in lipoma
Tssr137742 16 24393534 to 24393545 11 + TSS region transcription start site region 137742
Tssr137743 16 24393547 to 24393554 7 + TSS region transcription start site region 137743
Tssr140599 16 24393618 to 24393697 79 - TSS region transcription start site region 140599
Tssr140600 16 24393698 to 24393716 18 - TSS region transcription start site region 140600
Tssr137744 16 24393708 to 24393763 55 + TSS region transcription start site region 137744
Gm24440 16 24406355 to 24406417 62 - snRNA gene predicted gene, 24440
Tssr137745 16 24418295 to 24418296 1 + TSS region transcription start site region 137745